Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZSCAN29 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 146050 zinc finger and SCAN domain containing 29 chr15 - 43661758 - 43667258 43662258 Transcription Factor Binding Sites   Download all TFBS in the ZSCAN29 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints E2F4_E2F_DBD_dimeric_12_2 SELEX + 43662791 43662802 2.0E-06 TTTGGCTCCAAA 12 E2F4_E2F_DBD_dimeric_12_2 SELEX - 43662791 43662802 2.0E-06 TTTGGAGCCAAA 12 SPIC_ETS_full_monomeric_14_1 SELEX + 43663229 43663242 9.0E-06 CCAAACCGGAAGTC 14 FLI1_ETS_full_monomeric_10_1 SELEX + 43663233 43663242 7.0E-06 ACCGGAAGTC 10 ETV5_ETS_DBD_monomeric_10_1 SELEX + 43663233 43663242 7.0E-06 ACCGGAAGTC 10 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 43662635 43662645 1.0E-05 GCCCCGCCCCC 11 ERG_ETS_full_monomeric_10_1 SELEX + 43663233 43663242 5.0E-06 ACCGGAAGTC 10 ETV3_ETS_DBD_monomeric_10_1 SELEX + 43663233 43663242 3.0E-06 ACCGGAAGTC 10 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 43657440 43657457 8.0E-06 TTTATTAGTGGTCATCAG 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 43657528 43657545 4.0E-06 ATCATTTACTACCATTAA 18 Zfp423_MA0116.1 JASPAR + 43663771 43663785 9.0E-06 AGCCCCTTAGGGTCA 15 ELF4_ETS_full_monomeric_12_1 SELEX + 43663231 43663242 2.0E-06 AAACCGGAAGTC 12 ELF4_ETS_full_monomeric_12_1 SELEX - 43663351 43663362 8.0E-06 GTCCCGGAAGTT 12 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 43657520 43657534 4.0E-06 CGATTACATTAATGG 15 FEV_ETS_DBD_monomeric_10_1 SELEX + 43663233 43663242 6.0E-06 ACCGGAAGTC 10 SOX8_HMG_full_dimeric_17_1 SELEX + 43657526 43657542 2.0E-06 CATTAATGGTAGTAAAT 17 ETV1_ETS_DBD_monomeric_10_1 SELEX + 43663233 43663242 7.0E-06 ACCGGAAGTC 10 ERG_ETS_full_dimeric_14_1 SELEX + 43663233 43663246 5.0E-06 ACCGGAAGTCCGAG 14 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 43657528 43657543 2.0E-06 TTAATGGTAGTAAATG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 43657528 43657543 2.0E-06 TTAATGGTAGTAAATG 16 ETV2_ETS_DBD_monomeric_11_1 SELEX + 43663232 43663242 6.0E-06 AACCGGAAGTC 11 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 43657440 43657457 7.0E-06 CTGATGACCACTAATAAA 18 ETS1_ETS_full_monomeric_10_1 SELEX + 43663233 43663242 9.0E-06 ACCGGAAGTC 10 SP1_MA0079.2 JASPAR + 43662636 43662645 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 43663508 43663517 9.0E-06 CCCCTCCTCC 10 ELK4_ETS_DBD_monomeric_10_1 SELEX + 43663233 43663242 5.0E-06 ACCGGAAGTC 10 ELK4_MA0076.1 JASPAR + 43663233 43663241 4.0E-06 ACCGGAAGT 9 ELK1_MA0028.1 JASPAR + 43663231 43663240 5.0E-06 AAACCGGAAG 10 ERF_ETS_DBD_monomeric_10_1 SELEX + 43663233 43663242 5.0E-06 ACCGGAAGTC 10 ELK1_ETS_full_monomeric_10_1 SELEX + 43663233 43663242 4.0E-06 ACCGGAAGTC 10 EHF_ETS_full_monomeric_12_1 SELEX + 43663231 43663242 6.0E-06 AAACCGGAAGTC 12 ELF1_ETS_full_monomeric_12_1 SELEX + 43663231 43663242 2.0E-06 AAACCGGAAGTC 12 ELF3_ETS_DBD_monomeric_12_1 SELEX + 43663231 43663242 1.0E-05 AAACCGGAAGTC 12 Elk3_ETS_DBD_monomeric_10_1 SELEX + 43663233 43663242 4.0E-06 ACCGGAAGTC 10 ETV6_ETS_full_dimeric_15_1 SELEX + 43663228 43663242 5.0E-06 CCCAAACCGGAAGTC 15 NRF1_NRF_full_dimeric_12_1 SELEX - 43663268 43663279 2.0E-06 CGCGCATGCGCC 12 FLI1_ETS_full_monomeric_14_1 SELEX + 43663233 43663246 5.0E-06 ACCGGAAGTCCGAG 14 E2F3_E2F_DBD_dimeric_18_3 SELEX - 43662788 43662805 4.0E-06 CGCTTTGGAGCCAAAACC 18 V_ELF5_02_M01980 TRANSFAC - 43663351 43663360 5.0E-06 CCCGGAAGTT 10 V_ERG_03_M02062 TRANSFAC + 43663233 43663242 5.0E-06 ACCGGAAGTC 10 V_ERM_01_M01992 TRANSFAC + 43663233 43663242 7.0E-06 ACCGGAAGTC 10 V_SAP1A_01_M01167 TRANSFAC + 43663232 43663242 1.0E-06 AACCGGAAGTC 11 V_ELK1_04_M01165 TRANSFAC + 43663232 43663242 2.0E-06 AACCGGAAGTC 11 V_NRSF_Q4_M01028 TRANSFAC + 43663330 43663348 7.0E-06 GTGGACCCCGTTGAGCTGC 19 V_RHOX11_01_M01347 TRANSFAC - 43657498 43657514 0.0E+00 ACTATGCTGTTATGGAA 17 V_SP1_Q6_01_M00931 TRANSFAC - 43662635 43662644 4.0E-06 GGGGCGGGGC 10 V_ELF1_01_M01975 TRANSFAC - 43663351 43663360 8.0E-06 CCCGGAAGTT 10 V_SP1_03_M02281 TRANSFAC + 43662636 43662645 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 43663508 43663517 9.0E-06 CCCCTCCTCC 10 V_AP2_Q6_M00189 TRANSFAC - 43663689 43663700 3.0E-06 CTCCCCCAGGCG 12 V_HEN1_01_M00068 TRANSFAC + 43662575 43662596 3.0E-06 GCTGGTCGCAGCTGATCTCCCC 22 V_HEN1_01_M00068 TRANSFAC - 43662575 43662596 4.0E-06 GGGGAGATCAGCTGCGACCAGC 22 V_RHOX11_02_M01384 TRANSFAC - 43657498 43657514 0.0E+00 ACTATGCTGTTATGGAA 17 V_PEA3_01_M01991 TRANSFAC + 43663233 43663242 8.0E-06 ACCGGAAGTC 10 V_ELF2_02_M02054 TRANSFAC - 43663351 43663360 4.0E-06 CCCGGAAGTT 10 V_BACH1_01_M00495 TRANSFAC + 43657473 43657487 7.0E-06 CTCCTGAGTCATACT 15 V_GC_01_M00255 TRANSFAC - 43662633 43662646 2.0E-06 AGGGGGCGGGGCGG 14 V_ELK1_06_M02059 TRANSFAC + 43663233 43663242 4.0E-06 ACCGGAAGTC 10 V_SAP1A_02_M01983 TRANSFAC + 43663233 43663242 7.0E-06 ACCGGAAGTC 10 V_AP1_Q6_01_M00925 TRANSFAC - 43657476 43657484 7.0E-06 ATGACTCAG 9 V_SP1_Q6_M00196 TRANSFAC - 43662634 43662646 0.0E+00 AGGGGGCGGGGCG 13 V_ERG_01_M01752 TRANSFAC + 43663233 43663241 4.0E-06 ACCGGAAGT 9 V_CETS2_01_M01989 TRANSFAC + 43663233 43663242 7.0E-06 ACCGGAAGTC 10 V_EHF_02_M01974 TRANSFAC - 43663351 43663360 8.0E-06 CCCGGAAGTT 10 V_GADP_01_M01258 TRANSFAC - 43663231 43663242 6.0E-06 GACTTCCGGTTT 12 V_SP1SP3_Q4_M01219 TRANSFAC - 43663508 43663518 1.0E-05 CCCCCTCCTCC 11 V_NFKAPPAB50_01_M00051 TRANSFAC - 43663358 43663367 8.0E-06 GGGGAGTCCC 10 V_SPIB_01_M01204 TRANSFAC + 43663229 43663245 7.0E-06 CCAAACCGGAAGTCCGA 17 V_AP1_C_M00199 TRANSFAC - 43657476 43657484 6.0E-06 ATGACTCAG 9 V_ELK1_02_M00025 TRANSFAC + 43663230 43663243 1.0E-06 CAAACCGGAAGTCC 14 V_CETS1P54_01_M00032 TRANSFAC + 43663233 43663242 5.0E-06 ACCGGAAGTC 10 V_TCF1_07_M02919 TRANSFAC + 43657451 43657464 8.0E-06 TCATCAGGATTAGA 14 V_STAF_02_M00264 TRANSFAC + 43663375 43663395 7.0E-06 CCTTCCCAGCTTCCCGTCCGC 21 V_PEA3_02_M02066 TRANSFAC + 43663233 43663242 8.0E-06 ACCGGAAGTC 10 V_ELF4_01_M01979 TRANSFAC - 43663351 43663360 8.0E-06 CCCGGAAGTT 10 V_ELK1_01_M00007 TRANSFAC + 43663230 43663245 0.0E+00 CAAACCGGAAGTCCGA 16 V_MAF_Q6_01_M00983 TRANSFAC + 43657474 43657484 1.0E-06 TCCTGAGTCAT 11 V_SP4_Q5_M01273 TRANSFAC + 43662635 43662645 1.0E-06 GCCCCGCCCCC 11 V_ERM_02_M02069 TRANSFAC + 43663233 43663242 8.0E-06 ACCGGAAGTC 10 V_EOMES_04_M02851 TRANSFAC - 43663791 43663806 8.0E-06 CTCTAGGTGTCGCATC 16 V_HEN1_02_M00058 TRANSFAC + 43662575 43662596 4.0E-06 GCTGGTCGCAGCTGATCTCCCC 22 V_RHOX11_05_M03099 TRANSFAC - 43657498 43657514 0.0E+00 ACTATGCTGTTATGGAA 17 V_ZFP206_01_M01742 TRANSFAC - 43663269 43663279 2.0E-06 CGCGCATGCGC 11 V_NRF2_01_M00108 TRANSFAC + 43663233 43663242 5.0E-06 ACCGGAAGTC 10 V_NRF2_Q4_M00821 TRANSFAC + 43657473 43657485 3.0E-06 CTCCTGAGTCATA 13 V_NRF1_Q6_M00652 TRANSFAC + 43663270 43663279 4.0E-06 CGCATGCGCG 10 V_T3RBETA_Q6_01_M02119 TRANSFAC + 43663756 43663772 5.0E-06 AGGTGACTGGAGGGCAG 17 V_ZFP281_01_M01597 TRANSFAC + 43663507 43663517 7.0E-06 TGGAGGAGGGG 11 V_CETS1_02_M02063 TRANSFAC + 43663233 43663242 8.0E-06 ACCGGAAGTC 10 V_NET_02_M02060 TRANSFAC + 43663233 43663242 8.0E-06 ACCGGAAGTC 10 V_SP1_Q2_01_M00933 TRANSFAC + 43662636 43662645 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC - 43662634 43662646 0.0E+00 AGGGGGCGGGGCG 13 V_ELK1_03_M01163 TRANSFAC + 43663232 43663242 2.0E-06 AACCGGAAGTC 11 V_RHOX11_06_M03100 TRANSFAC - 43657498 43657514 0.0E+00 ACTATGCTGTTATGGAA 17 V_ETV3_02_M02068 TRANSFAC + 43663233 43663242 9.0E-06 ACCGGAAGTC 10 V_PPARG_01_M00512 TRANSFAC + 43663776 43663796 1.0E-05 CTTAGGGTCAAGGCTGATGCG 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.