Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

IQGAP3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 128239 IQ motif containing GTPase activating protein 3 chr1 - 156541896 - 156547396 156542396 Transcription Factor Binding Sites   Download all TFBS in the IQGAP3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MYF6_bHLH_full_dimeric_10_1 SELEX + 156541347 156541356 6.0E-06 AACAAGTGTT 10 SOX10_HMG_full_dimeric_14_1 SELEX + 156541222 156541235 4.0E-06 TGAATGAGCAGTTA 14 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 156541233 156541245 2.0E-06 TTAAGTAAATTAA 13 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 156541233 156541245 4.0E-06 TTAATTTACTTAA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 156541078 156541089 4.0E-06 TAAGAAAATAAA 12 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 156540959 156540976 6.0E-06 GTAACTAAGGCAAATTAT 18 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 156541230 156541244 4.0E-06 CAGTTAAGTAAATTA 15 FOXL1_forkhead_full_dimeric_13_1 SELEX + 156541466 156541478 6.0E-06 AAAAAATAAAAAA 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 156541078 156541088 6.0E-06 TAAGAAAATAA 11 Alx1_homeodomain_DBD_dimeric_13_1 SELEX + 156541233 156541245 3.0E-06 TTAAGTAAATTAA 13 Alx1_homeodomain_DBD_dimeric_13_1 SELEX - 156541233 156541245 2.0E-06 TTAATTTACTTAA 13 SOX8_HMG_DBD_dimeric_14_1 SELEX + 156541222 156541235 2.0E-06 TGAATGAGCAGTTA 14 ISL2_homeodomain_DBD_monomeric_8_1 SELEX + 156541140 156541147 1.0E-05 GCACTTAA 8 ISX_homeodomain_DBD_dimeric_13_1 SELEX - 156541233 156541245 2.0E-06 TTAATTTACTTAA 13 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 156541390 156541401 3.0E-06 AATGACATCATC 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 156541390 156541401 8.0E-06 GATGATGTCATT 12 IRF7_IRF_DBD_trimeric_17_1 SELEX + 156541476 156541492 5.0E-06 AAACCGAAAAACAGTTT 17 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX + 156541139 156541147 7.0E-06 AGCACTTAA 9 Pax4_MA0068.1 JASPAR + 156541465 156541494 4.0E-06 AAAAAAATAAAAAACCGAAAAACAGTTTTC 30 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 156540953 156540966 3.0E-06 GCAATCATAATTTG 14 JDP2_bZIP_full_dimeric_12_1 SELEX + 156541390 156541401 5.0E-06 AATGACATCATC 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 156541390 156541401 8.0E-06 GATGATGTCATT 12 PROP1_homeodomain_full_dimeric_11_1 SELEX - 156541234 156541244 5.0E-06 TAATTTACTTA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 156541467 156541477 8.0E-06 AAAAATAAAAA 11 ALX3_homeodomain_full_dimeric_13_1 SELEX + 156541233 156541245 5.0E-06 TTAAGTAAATTAA 13 ALX3_homeodomain_full_dimeric_13_1 SELEX - 156541233 156541245 3.0E-06 TTAATTTACTTAA 13 OTX2_homeodomain_DBD_monomeric_8_1 SELEX + 156540985 156540992 7.0E-06 TTAATCCT 8 POU2F3_POU_DBD_dimeric_12_1 SELEX - 156541181 156541192 7.0E-06 CAGAATATGCAA 12 DRGX_homeodomain_DBD_dimeric_13_1 SELEX + 156541233 156541245 7.0E-06 TTAAGTAAATTAA 13 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 156541233 156541245 3.0E-06 TTAATTTACTTAA 13 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 156541180 156541196 7.0E-06 ATTGCATATTCTGCAAT 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 156541180 156541196 4.0E-06 ATTGCAGAATATGCAAT 17 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 156541233 156541245 4.0E-06 TTAAGTAAATTAA 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 156541233 156541245 4.0E-06 TTAATTTACTTAA 13 NFATC1_NFAT_full_dimeric_20_1 SELEX + 156541477 156541496 3.0E-06 AACCGAAAAACAGTTTTCCT 20 NFATC1_NFAT_full_dimeric_20_1 SELEX - 156541479 156541498 9.0E-06 ACAGGAAAACTGTTTTTCGG 20 MAFK_bZIP_full_dimeric_15_1 SELEX + 156541181 156541195 1.0E-05 TTGCATATTCTGCAA 15 SOX9_HMG_full_dimeric_16_3 SELEX + 156541221 156541236 1.0E-06 ATGAATGAGCAGTTAA 16 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 156541081 156541091 9.0E-06 GAAAATAAACT 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 156541467 156541477 4.0E-06 AAAAATAAAAA 11 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 156541178 156541198 5.0E-06 ATATTGCATATTCTGCAATGA 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 156541178 156541198 4.0E-06 TCATTGCAGAATATGCAATAT 21 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 156541067 156541081 2.0E-06 TACACACACAGTAAG 15 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 156541233 156541245 6.0E-06 TTAAGTAAATTAA 13 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 156541233 156541245 3.0E-06 TTAATTTACTTAA 13 Foxd3_MA0041.1 JASPAR - 156541079 156541090 8.0E-06 GTTTATTTTCTT 12 Foxd3_MA0041.1 JASPAR - 156541465 156541476 3.0E-06 TTTTATTTTTTT 12 PITX1_homeodomain_full_monomeric_9_1 SELEX + 156540984 156540992 9.0E-06 CTTAATCCT 9 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 156541233 156541245 6.0E-06 TTAAGTAAATTAA 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 156541233 156541245 4.0E-06 TTAATTTACTTAA 13 Hltf_MA0109.1 JASPAR + 156541172 156541181 6.0E-06 TTCCTTATAT 10 MAFG_bZIP_full_dimeric_21_1 SELEX + 156541178 156541198 6.0E-06 ATATTGCATATTCTGCAATGA 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 156541178 156541198 7.0E-06 TCATTGCAGAATATGCAATAT 21 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 156541181 156541192 6.0E-06 CAGAATATGCAA 12 FOXI1_forkhead_full_dimeric_17_1 SELEX - 156541440 156541456 9.0E-06 ATGTGTATGTACAAAAT 17 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX - 156541234 156541244 9.0E-06 TAATTTACTTA 11 CPEB1_RRM_full_monomeric_8_1 SELEX + 156541470 156541477 4.0E-06 AATAAAAA 8 POU3F2_POU_DBD_monomeric_12_1 SELEX + 156541233 156541244 7.0E-06 TTAAGTAAATTA 12 ELF5_MA0136.1 JASPAR + 156541169 156541177 2.0E-06 TATTTCCTT 9 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 156541079 156541091 1.0E-06 AAGAAAATAAACT 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 156541465 156541477 0.0E+00 AAAAAAATAAAAA 13 BATF3_bZIP_DBD_dimeric_14_1 SELEX + 156541389 156541402 7.0E-06 GAATGACATCATCT 14 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 156541465 156541477 6.0E-06 AAAAAAATAAAAA 13 V_RUSH1A_02_M01107 TRANSFAC + 156541172 156541181 6.0E-06 TTCCTTATAT 10 V_MEQ_01_M02049 TRANSFAC + 156541244 156541252 4.0E-06 AAAACACAT 9 V_FOXP1_01_M00987 TRANSFAC - 156541468 156541487 6.0E-06 GTTTTTCGGTTTTTTATTTT 20 V_FOXP1_01_M00987 TRANSFAC + 156544519 156544538 4.0E-06 TGAGTTCTTTTTTTTTTTTT 20 V_DBX1_01_M01483 TRANSFAC + 156541235 156541251 2.0E-06 AAGTAAATTAAAACACA 17 V_ATF5_01_M01295 TRANSFAC + 156540991 156541001 6.0E-06 CTTCTCCCTTC 11 V_HMGIY_Q3_M01010 TRANSFAC - 156541463 156541477 1.0E-06 TTTTTATTTTTTTGA 15 V_FOXD3_01_M00130 TRANSFAC - 156541465 156541476 3.0E-06 TTTTATTTTTTT 12 V_COE1_Q6_M01871 TRANSFAC - 156541914 156541927 8.0E-06 CCTCAAGGGATCTG 14 V_HOXA13_02_M01297 TRANSFAC + 156541373 156541381 3.0E-06 AAATAAACC 9 V_HOXA13_02_M01297 TRANSFAC + 156541469 156541477 4.0E-06 AAATAAAAA 9 V_NFAT3_Q3_M01734 TRANSFAC - 156541369 156541378 1.0E-05 TTATTTTCCA 10 V_NFAT3_Q3_M01734 TRANSFAC + 156541517 156541526 1.0E-05 TAGTTTTCCT 10 V_NKX25_Q6_M02108 TRANSFAC - 156540939 156540949 5.0E-06 CTCACTTGAGG 11 V_FOXO3A_Q1_M01137 TRANSFAC + 156541466 156541477 7.0E-06 AAAAAATAAAAA 12 V_HNF3_Q6_01_M01012 TRANSFAC - 156541036 156541053 3.0E-06 CTTTCTGTTTGATTTTGT 18 V_HNF3_Q6_01_M01012 TRANSFAC - 156541461 156541478 9.0E-06 TTTTTTATTTTTTTGAGA 18 V_JUNDM2_03_M02772 TRANSFAC + 156541388 156541403 6.0E-06 TGAATGACATCATCTC 16 V_JUNDM2_03_M02772 TRANSFAC - 156541388 156541403 8.0E-06 GAGATGATGTCATTCA 16 V_HFH4_01_M00742 TRANSFAC - 156541082 156541094 6.0E-06 CTGAGTTTATTTT 13 V_LHX3_01_M01471 TRANSFAC + 156541234 156541250 6.0E-06 TAAGTAAATTAAAACAC 17 V_PU1_Q4_M01172 TRANSFAC + 156541163 156541181 6.0E-06 TTATCCTATTTCCTTATAT 19 V_PU1_Q4_M01172 TRANSFAC + 156544514 156544532 6.0E-06 AAGCTTGAGTTCTTTTTTT 19 V_NFAT2_01_M01748 TRANSFAC + 156541368 156541376 2.0E-06 ATGGAAAAT 9 V_BRN2_01_M00145 TRANSFAC + 156541365 156541380 1.0E-06 AGCATGGAAAATAAAC 16 V_TCFAP2E_04_M02926 TRANSFAC + 156541097 156541110 9.0E-06 AGCTTGAAAAAAGG 14 V_TCFAP2E_04_M02926 TRANSFAC + 156541460 156541473 3.0E-06 GTCTCAAAAAAATA 14 V_OCT2_02_M01761 TRANSFAC - 156541182 156541191 5.0E-06 AGAATATGCA 10 V_ELF4_04_M02850 TRANSFAC + 156541460 156541476 5.0E-06 GTCTCAAAAAAATAAAA 17 V_ELF4_04_M02850 TRANSFAC + 156541461 156541477 0.0E+00 TCTCAAAAAAATAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 156541463 156541479 6.0E-06 TCAAAAAAATAAAAAAC 17 V_MECP2_01_M01298 TRANSFAC - 156542428 156542442 5.0E-06 CCGGGAACTACAAAT 15 V_HELIOSA_02_M01004 TRANSFAC - 156541169 156541179 1.0E-05 ATAAGGAAATA 11 V_HELIOSA_02_M01004 TRANSFAC - 156541519 156541529 2.0E-06 TAAAGGAAAAC 11 V_FOXA2_02_M02853 TRANSFAC + 156541467 156541481 2.0E-06 AAAAATAAAAAACCG 15 V_OCT1_02_M00136 TRANSFAC - 156541178 156541192 0.0E+00 CAGAATATGCAATAT 15 V_ZFP105_03_M02827 TRANSFAC + 156541463 156541477 7.0E-06 TCAAAAAAATAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 156541466 156541480 8.0E-06 AAAAAATAAAAAACC 15 V_CART1_01_M00416 TRANSFAC + 156540957 156540974 7.0E-06 TCATAATTTGCCTTAGTT 18 V_SOX8_04_M02912 TRANSFAC - 156541215 156541228 3.0E-06 TCATTCATATAAGC 14 V_NFAT_Q6_M00302 TRANSFAC - 156541518 156541529 3.0E-06 TAAAGGAAAACT 12 V_OLF1_01_M00261 TRANSFAC + 156541319 156541340 9.0E-06 ATCAGTTCCTCCAAGGGGGTGT 22 V_IRF3_Q3_M01279 TRANSFAC + 156541516 156541528 2.0E-06 CTAGTTTTCCTTT 13 V_RFX4_04_M02893 TRANSFAC + 156540965 156540979 3.0E-06 TGCCTTAGTTACAGT 15 V_NKX25_Q5_M01043 TRANSFAC - 156540941 156540950 3.0E-06 TCTCACTTGA 10 V_SFPI1_04_M02896 TRANSFAC - 156541170 156541183 5.0E-06 CAATATAAGGAAAT 14 V_ELF5_01_M01197 TRANSFAC - 156541169 156541179 0.0E+00 ATAAGGAAATA 11 V_IRF3_06_M02871 TRANSFAC - 156541625 156541638 8.0E-06 GCAGAAAGGTTCTA 14 V_OCT1_04_M00138 TRANSFAC + 156541360 156541382 5.0E-06 TGTTAAGCATGGAAAATAAACCA 23 V_OCT1_08_M01354 TRANSFAC - 156541235 156541250 1.0E-05 GTGTTTTAATTTACTT 16 V_MAFK_Q3_M02022 TRANSFAC + 156541133 156541143 0.0E+00 TGACTCAGCAC 11 V_STAT4_Q5_M02117 TRANSFAC - 156541521 156541530 2.0E-06 TTAAAGGAAA 10 V_LMO2COM_01_M00277 TRANSFAC + 156542458 156542469 7.0E-06 GCCCAGGTGCTG 12 V_OCT4_02_M01124 TRANSFAC - 156541021 156541035 1.0E-06 ATTGTGTTTCTAAGG 15 V_LHX3b_01_M01971 TRANSFAC - 156541238 156541247 1.0E-05 TTTTAATTTA 10 V_SOX17_04_M02904 TRANSFAC - 156541216 156541232 0.0E+00 CTGCTCATTCATATAAG 17 V_MAF_Q6_01_M00983 TRANSFAC - 156541132 156541142 0.0E+00 TGCTGAGTCAA 11 V_VJUN_01_M00036 TRANSFAC + 156541388 156541403 9.0E-06 TGAATGACATCATCTC 16 V_VJUN_01_M00036 TRANSFAC - 156541388 156541403 6.0E-06 GAGATGATGTCATTCA 16 V_MTF1_06_M02882 TRANSFAC + 156541466 156541479 1.0E-06 AAAAAATAAAAAAC 14 V_MTF1_06_M02882 TRANSFAC + 156541467 156541480 1.0E-05 AAAAATAAAAAACC 14 V_FAC1_01_M00456 TRANSFAC + 156541027 156541040 6.0E-06 AAACACAATACAAA 14 V_TAL1_01_M01591 TRANSFAC + 156540994 156541006 2.0E-06 CTCCCTTCTCTCC 13 V_FOXL1_02_M02857 TRANSFAC + 156541239 156541254 8.0E-06 AAATTAAAACACATGC 16 V_T3R_Q6_M00963 TRANSFAC + 156541494 156541502 7.0E-06 CCTGTCCTT 9 V_HDX_01_M01333 TRANSFAC + 156541033 156541049 8.0E-06 AATACAAAATCAAACAG 17 V_SMAD3_03_M02794 TRANSFAC + 156542381 156542397 7.0E-06 CACCGCCAGACAGGACA 17 V_PLZF_02_M01075 TRANSFAC - 156541513 156541541 1.0E-06 CCAGTCTTCTGTTAAAGGAAAACTAGTTC 29 V_SOX14_04_M02901 TRANSFAC + 156541428 156541444 6.0E-06 GCGATGGGAGGGATTTT 17 V_SRF_06_M02916 TRANSFAC + 156541077 156541093 2.0E-06 GTAAGAAAATAAACTCA 17 V_SRF_06_M02916 TRANSFAC + 156541461 156541477 5.0E-06 TCTCAAAAAAATAAAAA 17 V_SRF_06_M02916 TRANSFAC + 156541462 156541478 7.0E-06 CTCAAAAAAATAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 156541463 156541479 8.0E-06 TCAAAAAAATAAAAAAC 17 V_NFE2_Q6_M02104 TRANSFAC + 156541131 156541146 3.0E-06 TTTGACTCAGCACTTA 16 V_SOX18_04_M02905 TRANSFAC + 156541234 156541249 7.0E-06 TAAGTAAATTAAAACA 16 V_RFX3_05_M02892 TRANSFAC + 156540961 156540983 4.0E-06 AATTTGCCTTAGTTACAGTCTCC 23 V_NFE2_01_M00037 TRANSFAC - 156541132 156541142 2.0E-06 TGCTGAGTCAA 11 V_RFX3_04_M02788 TRANSFAC + 156541015 156541037 3.0E-06 TATTCTCCTTAGAAACACAATAC 23 V_RFX3_04_M02788 TRANSFAC - 156541351 156541373 8.0E-06 TTCCATGCTTAACAACCAACACT 23 V_SOX15_04_M02903 TRANSFAC + 156541143 156541157 7.0E-06 CTTAATGTCATTCCC 15 V_ELF5_04_M02241 TRANSFAC + 156541169 156541177 2.0E-06 TATTTCCTT 9 V_LHX5_01_M01353 TRANSFAC + 156541234 156541250 1.0E-05 TAAGTAAATTAAAACAC 17 V_CMAF_01_M01070 TRANSFAC - 156541129 156541147 2.0E-06 TTAAGTGCTGAGTCAAAGA 19 V_TAACC_B_M00331 TRANSFAC + 156541032 156541054 1.0E-06 CAATACAAAATCAAACAGAAAGA 23 V_TAACC_B_M00331 TRANSFAC + 156541291 156541313 3.0E-06 GAAAACACTGGCCAACCACAGGA 23 V_TAACC_B_M00331 TRANSFAC + 156541464 156541486 1.0E-06 CAAAAAAATAAAAAACCGAAAAA 23 V_TCF11MAFG_01_M00284 TRANSFAC + 156541127 156541148 3.0E-06 TGTCTTTGACTCAGCACTTAAT 22 V_SOX5_04_M02910 TRANSFAC + 156540955 156540969 8.0E-06 AATCATAATTTGCCT 15 V_ARID5A_04_M02840 TRANSFAC + 156541028 156541044 3.0E-06 AACACAATACAAAATCA 17 V_PAX4_04_M00380 TRANSFAC - 156544512 156544541 9.0E-06 AAAAAAAAAAAAAAAAGAACTCAAGCTTGG 30 V_PAX2_02_M00486 TRANSFAC + 156541084 156541092 2.0E-06 AATAAACTC 9 V_NANOG_02_M01247 TRANSFAC + 156541023 156541042 0.0E+00 TTAGAAACACAATACAAAAT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.