Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

AGPHD1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 123688 hydroxylysine kinase chr15 + 78794905 - 78800405 78799905 Transcription Factor Binding Sites   Download all TFBS in the AGPHD1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Sox1_HMG_DBD_dimeric_14_1 SELEX - 78799780 78799793 3.0E-06 CGAACAGAAATTCA 14 GCM2_GCM_DBD_monomeric_10_1 SELEX + 78799551 78799560 9.0E-06 GATGCGGGTG 10 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 78800123 78800133 4.0E-06 TGCCTCAGGCT 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 78800123 78800133 1.0E-06 AGCCTGAGGCA 11 EWSR1-FLI1_MA0149.1 JASPAR + 78799519 78799536 2.0E-06 AGAAGGAATGAAGGCTAG 18 ZNF232_C2H2_full_monomeric_19_1 SELEX - 78804547 78804565 4.0E-06 TAGAAAAATGTAGACTGAT 19 NFYA_MA0060.1 JASPAR + 78799664 78799679 8.0E-06 GAGAGCCAATCAGGAA 16 NFYA_MA0060.1 JASPAR + 78799861 78799876 1.0E-06 AGGAGCCAATCAGAAG 16 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 78800123 78800133 2.0E-06 TGCCTCAGGCT 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 78800123 78800133 3.0E-06 AGCCTGAGGCA 11 FIGLA_bHLH_DBD_dimeric_10_1 SELEX - 78802264 78802273 7.0E-06 ATCACCTGTT 10 SP1_MA0079.2 JASPAR - 78799895 78799904 9.0E-06 CCCCTCCTCC 10 MZF1_5-13_MA0057.1 JASPAR + 78800023 78800032 4.0E-06 GGAGGGGGAA 10 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 78799374 78799381 1.0E-05 ACATTCCA 8 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 78800123 78800133 2.0E-06 TGCCTCAGGCT 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 78800123 78800133 1.0E-06 AGCCTGAGGCA 11 DUXA_homeodomain_DBD_dimeric_13_1 SELEX + 78798550 78798562 7.0E-06 CCAAGTTAATCAG 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 78799536 78799548 7.0E-06 GGAAACAAAAACG 13 TBX1_TBX_DBD_dimeric_20_1 SELEX - 78804529 78804548 7.0E-06 ATGAGCTAAGTATTGTGTGA 20 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 78800123 78800133 3.0E-06 TGCCTCAGGCT 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 78800123 78800133 2.0E-06 AGCCTGAGGCA 11 V_TGIF_01_M00418 TRANSFAC + 78799564 78799574 9.0E-06 AGCTGTCAGTG 11 V_GATA1_Q6_M02004 TRANSFAC - 78804508 78804522 9.0E-06 GGAGGAGATAAGGCC 15 V_NKX25_Q6_M02108 TRANSFAC - 78800097 78800107 7.0E-06 CACACTTGCAG 11 V_SP1_03_M02281 TRANSFAC - 78799895 78799904 9.0E-06 CCCCTCCTCC 10 V_GATA_C_M00203 TRANSFAC - 78804507 78804517 4.0E-06 AGATAAGGCCA 11 V_NFY_C_M00209 TRANSFAC - 78799861 78799874 4.0E-06 TCTGATTGGCTCCT 14 V_TST1_01_M00133 TRANSFAC - 78798215 78798229 6.0E-06 TGGGAATTAAGATTG 15 V_TGIF_02_M01346 TRANSFAC - 78799560 78799576 4.0E-06 AACACTGACAGCTCCTC 17 V_CART1_01_M00416 TRANSFAC + 78798218 78798235 3.0E-06 TCTTAATTCCCATTCCCT 18 V_GATA3_05_M02859 TRANSFAC + 78798204 78798225 8.0E-06 ATTTCCAGATTCAATCTTAATT 22 V_AP1_Q4_M00188 TRANSFAC + 78804523 78804533 5.0E-06 AGTGACTCACA 11 V_EVI1_01_M00078 TRANSFAC - 78804502 78804517 7.0E-06 AGATAAGGCCAGAGAA 16 V_TTF1_Q6_M00794 TRANSFAC + 78799617 78799628 2.0E-06 CACTCAAGAGCC 12 V_PPARG_03_M00528 TRANSFAC - 78800200 78800216 4.0E-06 TCCTAGGTTACAGGTGA 17 V_PAX8_01_M00717 TRANSFAC - 78804527 78804541 8.0E-06 AAGTATTGTGTGAGT 15 V_PNR_01_M01650 TRANSFAC + 78799866 78799879 9.0E-06 CCAATCAGAAGTCA 14 V_TGIF1_01_M03111 TRANSFAC - 78799560 78799576 4.0E-06 AACACTGACAGCTCCTC 17 V_ZFP691_04_M02937 TRANSFAC - 78799677 78799693 8.0E-06 AACCGGACTCCTTATTC 17 V_CAAT_01_M00254 TRANSFAC + 78799861 78799872 9.0E-06 AGGAGCCAATCA 12 V_HAND1E47_01_M00222 TRANSFAC - 78798204 78798219 4.0E-06 GATTGAATCTGGAAAT 16 V_GATA2_01_M00076 TRANSFAC - 78800145 78800154 6.0E-06 GAGGATAGCG 10 V_PKNOX2_01_M01411 TRANSFAC + 78799560 78799575 7.0E-06 GAGGAGCTGTCAGTGT 16 V_NFY_01_M00287 TRANSFAC + 78799664 78799679 8.0E-06 GAGAGCCAATCAGGAA 16 V_NFY_01_M00287 TRANSFAC + 78799861 78799876 0.0E+00 AGGAGCCAATCAGAAG 16 V_ZFP281_01_M01597 TRANSFAC + 78799894 78799904 7.0E-06 TGGAGGAGGGG 11 V_TCFAP2B_04_M02924 TRANSFAC - 78800121 78800135 4.0E-06 GGAGCCTGAGGCATA 15 V_EWSR1FLI1_01_M02252 TRANSFAC + 78799519 78799536 2.0E-06 AGAAGGAATGAAGGCTAG 18 V_NFYA_Q5_M02106 TRANSFAC + 78799666 78799679 3.0E-06 GAGCCAATCAGGAA 14 V_NFYA_Q5_M02106 TRANSFAC + 78799863 78799876 0.0E+00 GAGCCAATCAGAAG 14 V_BRCA_01_M01082 TRANSFAC - 78799515 78799522 1.0E-05 TTCTGTTG 8 V_BRCA_01_M01082 TRANSFAC - 78799762 78799769 1.0E-05 TTCTGTTG 8

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.