Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SLAMF6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 114836 SLAM family member 6 chr1 - 160492552 - 160498052 160493052 Transcription Factor Binding Sites   Download all TFBS in the SLAMF6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 160490565 160490575 2.0E-06 CATGAGTCATT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 160490565 160490575 1.0E-06 AATGACTCATG 11 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 160489731 160489739 9.0E-06 TTAATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 160489731 160489740 5.0E-06 TTAATAAAAA 10 Foxk1_forkhead_DBD_putatively-multimeric_11_1 SELEX + 160492714 160492724 7.0E-06 CAGACACAATT 11 SOX10_HMG_full_dimeric_15_3 SELEX - 160490157 160490171 1.0E-06 ATGGACTTCAGTCAT 15 NFIA_NFI_full_dimeric_15_1 SELEX + 160492831 160492845 0.0E+00 TTGGCAGAGAGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 160492831 160492845 4.0E-06 CTGGCTCTCTGCCAA 15 IRF7_IRF_DBD_dimeric_14_1 SELEX + 160493045 160493058 3.0E-06 CATAAACTGAAAAT 14 SPIC_ETS_full_monomeric_14_1 SELEX - 160491497 160491510 7.0E-06 TACATGAGGAAGTT 14 FOXA1_MA0148.1 JASPAR + 160490039 160490049 5.0E-06 TGTTTGCTTTA 11 SOX9_HMG_full_dimeric_16_1 SELEX - 160492718 160492733 3.0E-06 AACAATTTCAATTGTG 16 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 160489941 160489957 9.0E-06 GTAAAAAGTAGATAACA 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 160490575 160490591 5.0E-06 AACAACCATGAAAAACA 17 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX + 160492713 160492723 4.0E-06 GCAGACACAAT 11 SOX9_HMG_full_dimeric_17_3 SELEX - 160490156 160490172 1.0E-06 AATGGACTTCAGTCATA 17 SRY_HMG_DBD_dimeric_16_1 SELEX + 160492718 160492733 0.0E+00 CACAATTGAAATTGTT 16 SRY_HMG_DBD_dimeric_16_1 SELEX - 160492718 160492733 0.0E+00 AACAATTTCAATTGTG 16 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 160490272 160490283 2.0E-06 AAAATGCTGATT 12 SOX8_HMG_full_dimeric_17_1 SELEX - 160491423 160491439 2.0E-06 AATCAATGGCATAGAGA 17 NFIX_NFI_full_dimeric_15_2 SELEX + 160492831 160492845 5.0E-06 TTGGCAGAGAGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 160492831 160492845 1.0E-06 CTGGCTCTCTGCCAA 15 SOX7_HMG_full_dimeric_17_2 SELEX - 160490156 160490172 2.0E-06 AATGGACTTCAGTCATA 17 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 160493022 160493035 1.0E-06 CAAAAACATTGACT 14 SPIB_ETS_DBD_monomeric_14_1 SELEX - 160491497 160491510 1.0E-05 TACATGAGGAAGTT 14 FOXK1_forkhead_DBD_putatively-multimeric_10_1 SELEX + 160492714 160492723 8.0E-06 CAGACACAAT 10 CLOCK_bHLH_DBD_dimeric_10_1 SELEX + 160489856 160489865 2.0E-06 AACACGTGTC 10 CLOCK_bHLH_DBD_dimeric_10_1 SELEX - 160489856 160489865 4.0E-06 GACACGTGTT 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 160493022 160493035 2.0E-06 CAAAAACATTGACT 14 Foxq1_MA0040.1 JASPAR - 160489912 160489922 1.0E-06 AAATGTTTATT 11 FIGLA_bHLH_DBD_dimeric_10_1 SELEX + 160489809 160489818 9.0E-06 AACACCTGGA 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 160489906 160489919 7.0E-06 GAGCACAATAAACA 14 SP1_MA0079.2 JASPAR - 160489580 160489589 3.0E-06 CCCCTCCCCC 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 160491430 160491443 1.0E-05 TAAAAATCAATGGC 14 FOXG1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 160492713 160492724 9.0E-06 GCAGACACAATT 12 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 160489849 160489862 7.0E-06 GTGGAAAAACACGT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 160493022 160493035 8.0E-06 CAAAAACATTGACT 14 SOX7_HMG_full_dimeric_16_1 SELEX + 160492718 160492733 0.0E+00 CACAATTGAAATTGTT 16 SOX7_HMG_full_dimeric_16_1 SELEX - 160492718 160492733 0.0E+00 AACAATTTCAATTGTG 16 NRL_bZIP_DBD_monomeric_11_1 SELEX - 160490273 160490283 3.0E-06 AAAATGCTGAT 11 IRF9_IRF_full_trimeric_15_1 SELEX - 160491053 160491067 7.0E-06 ATAGAAAGAGAAACA 15 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 160493022 160493035 7.0E-06 CAAAAACATTGACT 14 NFIB_NFI_full_dimeric_15_1 SELEX + 160492831 160492845 0.0E+00 TTGGCAGAGAGCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 160492831 160492845 5.0E-06 CTGGCTCTCTGCCAA 15 JDP2_bZIP_full_dimeric_9_1 SELEX + 160490566 160490574 4.0E-06 ATGAGTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 160490566 160490574 2.0E-06 ATGACTCAT 9 Pou5f1_MA0142.1 JASPAR - 160489913 160489927 7.0E-06 CTTTCAAATGTTTAT 15 Pou5f1_MA0142.1 JASPAR + 160490239 160490253 9.0E-06 CTTAGAAATGCAGAA 15 Pou5f1_MA0142.1 JASPAR - 160490273 160490287 3.0E-06 TATTAAAATGCTGAT 15 SOX21_HMG_DBD_dimeric_16_1 SELEX + 160492718 160492733 2.0E-06 CACAATTGAAATTGTT 16 SOX21_HMG_DBD_dimeric_16_1 SELEX - 160492718 160492733 1.0E-06 AACAATTTCAATTGTG 16 SOX18_HMG_full_dimeric_15_3 SELEX - 160490157 160490171 8.0E-06 ATGGACTTCAGTCAT 15 Sox3_HMG_DBD_dimeric_17_3 SELEX - 160490156 160490172 1.0E-05 AATGGACTTCAGTCATA 17 CPEB1_RRM_full_monomeric_8_1 SELEX + 160489733 160489740 4.0E-06 AATAAAAA 8 MAFK_bZIP_full_monomeric_12_1 SELEX - 160490273 160490284 4.0E-06 TAAAATGCTGAT 12 IRF3_IRF_full_trimeric_21_1 SELEX - 160490124 160490144 1.0E-05 GGGAGGAAGAAATAGAAACTA 21 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 160489965 160489980 9.0E-06 GGGGCCATCAGGTCAC 16 POU4F1_POU_DBD_monomeric_14_1 SELEX + 160489730 160489743 7.0E-06 CTTAATAAAAAATG 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 160491430 160491443 6.0E-06 TAAAAATCAATGGC 14 V_NFAT_Q4_01_M00935 TRANSFAC + 160489849 160489858 9.0E-06 GTGGAAAAAC 10 V_TCF3_01_M01594 TRANSFAC - 160489916 160489928 8.0E-06 TCTTTCAAATGTT 13 V_CDX2_Q5_01_M01659 TRANSFAC + 160489731 160489741 5.0E-06 TTAATAAAAAA 11 V_BACH2_01_M00490 TRANSFAC + 160490565 160490575 9.0E-06 CATGAGTCATT 11 V_MAFK_03_M02776 TRANSFAC - 160490271 160490285 0.0E+00 TTAAAATGCTGATTG 15 V_SMAD3_Q6_01_M01888 TRANSFAC + 160492711 160492723 6.0E-06 ATGCAGACACAAT 13 V_NF1_Q6_01_M00806 TRANSFAC - 160492829 160492845 7.0E-06 CTGGCTCTCTGCCAAGG 17 V_NF1A_Q6_M02103 TRANSFAC - 160492830 160492845 1.0E-06 CTGGCTCTCTGCCAAG 16 V_HMGIY_Q3_M01010 TRANSFAC - 160489717 160489731 1.0E-05 AGGTGAAATTCTTGT 15 V_HMGIY_Q3_M01010 TRANSFAC + 160492721 160492735 8.0E-06 AATTGAAATTGTTCA 15 V_SPIB_02_M02041 TRANSFAC - 160492678 160492687 4.0E-06 AGAGGAAATA 10 V_STAT_Q6_M00777 TRANSFAC + 160493056 160493068 8.0E-06 AATACTTCTGAGA 13 V_POU5F1_02_M02245 TRANSFAC - 160489913 160489927 7.0E-06 CTTTCAAATGTTTAT 15 V_POU5F1_02_M02245 TRANSFAC + 160490239 160490253 9.0E-06 CTTAGAAATGCAGAA 15 V_POU5F1_02_M02245 TRANSFAC - 160490273 160490287 3.0E-06 TATTAAAATGCTGAT 15 V_ZFP740_04_M02938 TRANSFAC + 160490288 160490304 7.0E-06 AGATTCCCCCAAGTAAT 17 V_ZTA_Q2_M00711 TRANSFAC + 160490005 160490017 7.0E-06 ACATTTTGACTCA 13 V_ZTA_Q2_M00711 TRANSFAC - 160490567 160490579 2.0E-06 AAACAATGACTCA 13 V_ISL2_01_M01328 TRANSFAC + 160490295 160490310 1.0E-05 CCCAAGTAATTTATAT 16 V_IRF_Q6_01_M00972 TRANSFAC - 160491054 160491064 3.0E-06 GAAAGAGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC - 160490123 160490138 2.0E-06 AAGAAATAGAAACTAA 16 V_IRF2_Q6_M01882 TRANSFAC - 160491051 160491066 3.0E-06 TAGAAAGAGAAACACA 16 V_FOXJ1_03_M02750 TRANSFAC + 160489910 160489925 8.0E-06 ACAATAAACATTTGAA 16 V_SP1_03_M02281 TRANSFAC - 160489580 160489589 3.0E-06 CCCCTCCCCC 10 V_HFH4_01_M00742 TRANSFAC + 160490036 160490048 2.0E-06 ATGTGTTTGCTTT 13 V_PU1_Q4_M01172 TRANSFAC + 160490125 160490143 9.0E-06 AGTTTCTATTTCTTCCTCC 19 V_HOXD13_01_M01404 TRANSFAC + 160489728 160489743 7.0E-06 ACCTTAATAAAAAATG 16 V_STAT4_Q4_M01666 TRANSFAC + 160489715 160489728 4.0E-06 TTACAAGAATTTCA 14 V_STAT4_Q4_M01666 TRANSFAC + 160489987 160490000 1.0E-06 TTCACAGAAGAGCA 14 V_HMGA2_01_M01300 TRANSFAC + 160491072 160491086 9.0E-06 ATTTCCCCCATAAAT 15 V_ETS_Q4_M00771 TRANSFAC + 160490096 160490107 9.0E-06 ATCTGCTTCCTG 12 V_HNF6_Q6_M00639 TRANSFAC - 160491431 160491442 2.0E-06 AAAAATCAATGG 12 V_SPIC_01_M02042 TRANSFAC - 160492678 160492687 7.0E-06 AGAGGAAATA 10 V_BACH1_01_M00495 TRANSFAC + 160490563 160490577 1.0E-06 GGCATGAGTCATTGT 15 V_SOX7_03_M02807 TRANSFAC - 160490564 160490585 2.0E-06 CATGAAAAACAATGACTCATGC 22 V_SPI1_03_M02078 TRANSFAC - 160491497 160491506 6.0E-06 TGAGGAAGTT 10 V_LMX1_01_M01409 TRANSFAC + 160489727 160489743 6.0E-06 CACCTTAATAAAAAATG 17 V_HOXB13_01_M01467 TRANSFAC + 160489728 160489743 3.0E-06 ACCTTAATAAAAAATG 16 V_HOXB13_01_M01467 TRANSFAC - 160490277 160490292 1.0E-05 AATCTTATTAAAATGC 16 V_MYCMAX_02_M00123 TRANSFAC + 160489855 160489866 7.0E-06 AAACACGTGTCT 12 V_STAF_01_M00262 TRANSFAC + 160491476 160491497 4.0E-06 AGTTCCCAGGATCCTCCACGTA 22 V_NKX61_01_M00424 TRANSFAC + 160490279 160490291 6.0E-06 ATTTTAATAAGAT 13 V_AP1_Q6_01_M00925 TRANSFAC - 160490566 160490574 4.0E-06 ATGACTCAT 9 V_MAZ_Q6_01_M02023 TRANSFAC + 160489580 160489593 3.0E-06 GGGGGAGGGGAGAA 14 V_AP2BETA_Q3_M01858 TRANSFAC + 160489568 160489583 1.0E-06 GCCAGGGGCTGGGGGG 16 V_HNF3_Q6_M00791 TRANSFAC - 160490037 160490049 8.0E-06 TAAAGCAAACACA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 160490039 160490049 1.0E-06 TGTTTGCTTTA 11 V_IRF_Q6_M00772 TRANSFAC + 160490122 160490136 1.0E-06 GTTAGTTTCTATTTC 15 V_HIC1_05_M02763 TRANSFAC - 160490555 160490570 3.0E-06 CTCATGCCAGCCTACA 16 V_ISRE_01_M00258 TRANSFAC + 160490124 160490138 1.0E-06 TAGTTTCTATTTCTT 15 V_ELF5_01_M01197 TRANSFAC - 160491497 160491507 6.0E-06 ATGAGGAAGTT 11 V_PBX1_01_M00096 TRANSFAC + 160489762 160489770 7.0E-06 AACAATCAA 9 V_HBP1_03_M02762 TRANSFAC - 160491037 160491052 8.0E-06 CATTTGAATGAGTTTA 16 V_SPIB_01_M01204 TRANSFAC - 160490962 160490978 8.0E-06 GAAATCAGGAAGCTTGG 17 V_SPIB_01_M01204 TRANSFAC - 160493064 160493080 7.0E-06 AGGAAGGGGAAGTCTCA 17 V_PAX8_01_M00717 TRANSFAC - 160491040 160491054 5.0E-06 CACATTTGAATGAGT 15 V_AP1_C_M00199 TRANSFAC + 160490566 160490574 8.0E-06 ATGAGTCAT 9 V_XFD2_01_M00268 TRANSFAC + 160489910 160489923 1.0E-06 ACAATAAACATTTG 14 V_ARID3A_04_M02735 TRANSFAC + 160489727 160489743 5.0E-06 CACCTTAATAAAAAATG 17 V_ISGF3G_03_M02771 TRANSFAC - 160490123 160490137 1.0E-06 AGAAATAGAAACTAA 15 V_SMAD4_Q6_M00733 TRANSFAC + 160492837 160492851 6.0E-06 GAGAGCCAGACAACT 15 V_AP1_01_M00517 TRANSFAC + 160490564 160490576 9.0E-06 GCATGAGTCATTG 13 V_LHX3b_01_M01971 TRANSFAC + 160490298 160490307 5.0E-06 AAGTAATTTA 10 V_SOX11_03_M02795 TRANSFAC - 160490567 160490583 2.0E-06 TGAAAAACAATGACTCA 17 V_BLIMP1_Q6_M01066 TRANSFAC + 160489589 160489604 4.0E-06 GAGAATGGGAAATGAC 16 V_PAX8_B_M00328 TRANSFAC - 160491038 160491055 4.0E-06 ACACATTTGAATGAGTTT 18 V_FOXO1_Q5_M01216 TRANSFAC + 160489794 160489802 1.0E-05 AAAAACAGA 9 V_AP1_Q4_01_M00926 TRANSFAC + 160490567 160490574 1.0E-05 TGAGTCAT 8 V_HOXA7_02_M01336 TRANSFAC + 160490296 160490312 5.0E-06 CCAAGTAATTTATATGC 17 V_SOX15_03_M02799 TRANSFAC + 160489904 160489920 4.0E-06 TTGAGCACAATAAACAT 17 V_AP3_Q6_M00690 TRANSFAC - 160490175 160490182 5.0E-06 TCTAAATT 8 V_IRF5_03_M02769 TRANSFAC - 160490123 160490137 6.0E-06 AGAAATAGAAACTAA 15 V_IPF1_05_M01255 TRANSFAC + 160491040 160491051 5.0E-06 ACTCATTCAAAT 12 V_AREB6_02_M00413 TRANSFAC + 160489724 160489735 1.0E-05 TTTCACCTTAAT 12 V_MAX_01_M00119 TRANSFAC + 160489854 160489867 1.0E-06 AAAACACGTGTCTG 14 V_MAX_01_M00119 TRANSFAC - 160489854 160489867 1.0E-06 CAGACACGTGTTTT 14 V_FOXL1_04_M02753 TRANSFAC - 160490043 160490059 9.0E-06 GAAATGTAAGTAAAGCA 17 V_DELTAEF1_01_M00073 TRANSFAC + 160489724 160489734 0.0E+00 TTTCACCTTAA 11 V_MEIS1_01_M00419 TRANSFAC - 160493038 160493049 9.0E-06 TTATGACAGAAG 12 V_TCF7_04_M02921 TRANSFAC + 160489729 160489743 8.0E-06 CCTTAATAAAAAATG 15 V_LMX1B_01_M01363 TRANSFAC - 160489727 160489743 6.0E-06 CATTTTTTATTAAGGTG 17 V_LMX1B_01_M01363 TRANSFAC - 160490278 160490294 8.0E-06 GGAATCTTATTAAAATG 17 V_FRA1_Q5_M01267 TRANSFAC + 160490567 160490574 1.0E-05 TGAGTCAT 8 V_ZBTB12_03_M02824 TRANSFAC - 160490173 160490189 9.0E-06 GCAAGGTTCTAAATTCC 17 V_SPIC_02_M02077 TRANSFAC - 160491497 160491506 3.0E-06 TGAGGAAGTT 10 V_ZFP281_01_M01597 TRANSFAC + 160489579 160489589 2.0E-06 GGGGGGAGGGG 11 V_OCT1_07_M00248 TRANSFAC + 160492719 160492730 9.0E-06 ACAATTGAAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC + 160490124 160490137 4.0E-06 TAGTTTCTATTTCT 14 V_IRF1_Q6_01_M01881 TRANSFAC - 160493046 160493059 1.0E-06 TATTTTCAGTTTAT 14 V_SOX8_03_M02808 TRANSFAC + 160490567 160490583 1.0E-05 TGAGTCATTGTTTTTCA 17 V_MYF6_03_M02781 TRANSFAC + 160489852 160489867 2.0E-06 GAAAAACACGTGTCTG 16 V_ZFP281_04_M02831 TRANSFAC - 160489577 160489591 5.0E-06 CTCCCCTCCCCCCCA 15 V_SRF_06_M02916 TRANSFAC + 160489730 160489746 6.0E-06 CTTAATAAAAAATGTCT 17 V_FOXJ2_01_M00422 TRANSFAC + 160489907 160489924 2.0E-06 AGCACAATAAACATTTGA 18 V_VMAF_01_M00035 TRANSFAC - 160490264 160490282 5.0E-06 AAATGCTGATTGGGGAATA 19 V_SOX2_Q6_M01272 TRANSFAC + 160490567 160490582 2.0E-06 TGAGTCATTGTTTTTC 16 V_HNF3B_Q6_M02014 TRANSFAC - 160492693 160492701 1.0E-05 TTATTTGCT 9 V_SOX12_03_M02796 TRANSFAC + 160490571 160490584 5.0E-06 TCATTGTTTTTCAT 14 V_SOX15_04_M02903 TRANSFAC - 160492919 160492933 5.0E-06 GTAAATGTCAATCCA 15 V_CTF1_01_M01196 TRANSFAC - 160492831 160492844 4.0E-06 TGGCTCTCTGCCAA 14 V_CTF1_01_M01196 TRANSFAC + 160492832 160492845 3.0E-06 TGGCAGAGAGCCAG 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 160489577 160489590 6.0E-06 TGGGGGGGAGGGGA 14 V_HOXA10_01_M01464 TRANSFAC + 160493040 160493055 6.0E-06 TCTGTCATAAACTGAA 16 V_MAFK_04_M02880 TRANSFAC - 160489999 160490013 7.0E-06 TCAAAATGTGCAATG 15 V_HOXD10_01_M01375 TRANSFAC + 160489728 160489744 5.0E-06 ACCTTAATAAAAAATGT 17 TLX1_NFIC_MA0119.1 JASPAR - 160492831 160492844 4.0E-06 TGGCTCTCTGCCAA 14 TLX1_NFIC_MA0119.1 JASPAR + 160492832 160492845 3.0E-06 TGGCAGAGAGCCAG 14 V_GLIS2_04_M02863 TRANSFAC - 160490279 160490292 7.0E-06 AATCTTATTAAAAT 14 V_AR_Q6_M00962 TRANSFAC + 160489905 160489913 6.0E-06 TGAGCACAA 9 V_SMAD1_01_M01590 TRANSFAC - 160490570 160490581 6.0E-06 AAAAACAATGAC 12 V_SPI1_02_M02043 TRANSFAC - 160492678 160492687 3.0E-06 AGAGGAAATA 10 V_SPIB_03_M02076 TRANSFAC - 160491497 160491506 2.0E-06 TGAGGAAGTT 10 V_NF1_Q6_M00193 TRANSFAC + 160492829 160492846 1.0E-06 CCTTGGCAGAGAGCCAGA 18 V_NANOG_02_M01247 TRANSFAC - 160490566 160490585 8.0E-06 CATGAAAAACAATGACTCAT 20 V_OCT4_01_M01125 TRANSFAC - 160489913 160489927 5.0E-06 CTTTCAAATGTTTAT 15 V_OCT4_01_M01125 TRANSFAC + 160490239 160490253 4.0E-06 CTTAGAAATGCAGAA 15 V_OCT4_01_M01125 TRANSFAC - 160490273 160490287 1.0E-06 TATTAAAATGCTGAT 15 V_ER_Q6_M00191 TRANSFAC - 160489972 160489990 1.0E-06 TGAAGAGATTGTGACCTGA 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.