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CPSF6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 11052 cleavage and polyadenylation specific factor 6, 68kDa chr12 + 69628316 - 69633816 69633316 Transcription Factor Binding Sites   Download all TFBS in the CPSF6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 69633058 69633075 0.0E+00 AATGAAAATATTAACAAA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 69633058 69633075 2.0E-06 TTTGTTAATATTTTCATT 18 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 69633061 69633073 2.0E-06 GAAAATATTAACA 13 CUX1_CUT_DBD_monomeric_10_1 SELEX - 69637630 69637639 7.0E-06 TAATCAATCA 10 Pax5_MA0014.1 JASPAR - 69634195 69634214 3.0E-06 GGATTAATGAGGCAGGACCA 20 YY2_C2H2_full_dimeric_12_1 SELEX - 69637163 69637174 4.0E-06 ACATACCGCCAT 12 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 69637620 69637636 1.0E-06 TCAATCAAGTGAAAACA 17 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX - 69634160 69634168 2.0E-06 AAAAGTCAA 9 FOXL1_forkhead_full_dimeric_13_1 SELEX - 69637633 69637645 3.0E-06 AGAAAATAATCAA 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 69633058 69633068 5.0E-06 AATGAAAATAT 11 GATA5_GATA_DBD_monomeric_8_1 SELEX + 69633040 69633047 7.0E-06 AGATAAGA 8 GATA4_GATA_DBD_monomeric_8_1 SELEX + 69633040 69633047 7.0E-06 AGATAAGA 8 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 69633060 69633073 1.0E-06 TGAAAATATTAACA 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 69633060 69633073 1.0E-06 TGTTAATATTTTCA 14 ZNF238_C2H2_full_monomeric_13_1 SELEX - 69636402 69636414 7.0E-06 CTTCCAGCTGTTC 13 RUNX3_RUNX_full_monomeric_10_1 SELEX - 69637035 69637044 1.0E-05 AAACCACAGA 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 69633060 69633073 2.0E-06 TGAAAATATTAACA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 69633060 69633073 0.0E+00 TGTTAATATTTTCA 14 ONECUT1_CUT_full_monomeric_14_1 SELEX - 69637629 69637642 7.0E-06 AAATAATCAATCAA 14 CUX2_CUT_DBD_monomeric_10_1 SELEX - 69637630 69637639 8.0E-06 TAATCAATCA 10 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 69633012 69633027 9.0E-06 CCACCTTTAAAAGTCC 16 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 69633012 69633027 4.0E-06 GGACTTTTAAAGGTGG 16 SP1_MA0079.2 JASPAR + 69633270 69633279 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 69633865 69633874 3.0E-06 CCCCTCCCCC 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 69637629 69637642 2.0E-06 AAATAATCAATCAA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 69633060 69633073 0.0E+00 TGAAAATATTAACA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 69633060 69633073 0.0E+00 TGTTAATATTTTCA 14 YY2_C2H2_full_monomeric_11_1 SELEX - 69633424 69633434 2.0E-06 TCCGCCATCTT 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 69637634 69637644 8.0E-06 GAAAATAATCA 11 PBX1_MA0070.1 JASPAR - 69637628 69637639 1.0E-06 TAATCAATCAAG 12 Gata1_MA0035.2 JASPAR + 69633038 69633048 1.0E-06 AAAGATAAGAA 11 GATA3_GATA_full_monomeric_8_1 SELEX + 69633040 69633047 7.0E-06 AGATAAGA 8 TBX15_TBX_DBD_dimeric_19_1 SELEX - 69637063 69637081 9.0E-06 ATGTAATATTTTCAGACCT 19 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 69633060 69633073 0.0E+00 TGAAAATATTAACA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 69633060 69633073 0.0E+00 TGTTAATATTTTCA 14 Pou5f1_MA0142.1 JASPAR + 69634252 69634266 1.0E-06 CTTTGTGATGAAAAT 15 Myf_MA0055.1 JASPAR - 69633359 69633370 8.0E-06 CGGCAGCAGCAG 12 Zfp740_C2H2_DBD_monomeric_10_1 SELEX + 69633335 69633344 1.0E-05 GCCCCCCCAC 10 RUNX1_MA0002.2 JASPAR + 69637034 69637044 0.0E+00 TTCTGTGGTTT 11 IRF3_IRF_full_trimeric_21_1 SELEX + 69632827 69632847 7.0E-06 TAGAGATGGAAATGGCAACAT 21 Sox2_MA0143.1 JASPAR + 69634251 69634265 0.0E+00 CCTTTGTGATGAAAA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 69637634 69637646 4.0E-06 GAGAAAATAATCA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 69632840 69632852 3.0E-06 GGCAACATAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 69633055 69633067 2.0E-06 ATAAATGAAAATA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 69633061 69633073 8.0E-06 GAAAATATTAACA 13 TBX1_TBX_DBD_dimeric_20_1 SELEX + 69633111 69633130 5.0E-06 GTGTGTGGAAACAGGTGGGA 20 HNF1A_MA0046.1 JASPAR - 69633060 69633073 1.0E-06 TGTTAATATTTTCA 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 69637629 69637642 1.0E-06 AAATAATCAATCAA 14 V_FOXP1_01_M00987 TRANSFAC - 69633055 69633074 0.0E+00 TTGTTAATATTTTCATTTAT 20 V_AP2ALPHA_Q6_M01857 TRANSFAC + 69633273 69633283 6.0E-06 CGCCCCCGGCC 11 V_HNF3B_01_M00131 TRANSFAC - 69633058 69633072 5.0E-06 GTTAATATTTTCATT 15 V_HNF3B_01_M00131 TRANSFAC + 69637615 69637629 1.0E-05 TGTAATGTTTTCACT 15 V_HNF3B_01_M00131 TRANSFAC + 69637633 69637647 3.0E-06 TTGATTATTTTCTCA 15 V_STAT5A_Q6_M01890 TRANSFAC - 69637174 69637186 5.0E-06 GGACTTCTCAGAA 13 V_GAF_Q6_M01209 TRANSFAC - 69636413 69636423 9.0E-06 CAAATTCCCCT 11 V_AML_Q6_M00769 TRANSFAC + 69637032 69637046 9.0E-06 CTTTCTGTGGTTTCA 15 V_TBX15_01_M01263 TRANSFAC + 69637063 69637081 8.0E-06 AGGTCTGAAAATATTACAT 19 V_GATA1_Q6_M02004 TRANSFAC + 69633035 69633049 2.0E-06 GAGAAAGATAAGAAC 15 V_ZFP410_04_M02936 TRANSFAC + 69634098 69634114 4.0E-06 TTCCTCCTCCCCTCACA 17 V_GATA2_02_M00348 TRANSFAC + 69633038 69633047 1.0E-06 AAAGATAAGA 10 V_YY1_02_M00069 TRANSFAC - 69633417 69633436 5.0E-06 CGTCCGCCATCTTCCTTCAG 20 V_BCL6_01_M01183 TRANSFAC - 69637070 69637085 1.0E-06 TTGTATGTAATATTTT 16 V_BCL6_01_M01183 TRANSFAC + 69637610 69637625 9.0E-06 CTTACTGTAATGTTTT 16 V_BCL6_01_M01183 TRANSFAC + 69637628 69637643 9.0E-06 CTTGATTGATTATTTT 16 V_FOXO4_02_M00476 TRANSFAC - 69633064 69633077 9.0E-06 GTTTTGTTAATATT 14 V_POU5F1_02_M02245 TRANSFAC + 69634252 69634266 1.0E-06 CTTTGTGATGAAAAT 15 V_FOXJ2_02_M00423 TRANSFAC - 69632932 69632945 9.0E-06 AAAACAATGTCTTG 14 V_OCT1_Q5_01_M00930 TRANSFAC - 69632892 69632902 7.0E-06 TTATTTGCATC 11 V_OCT1_Q5_01_M00930 TRANSFAC - 69633058 69633068 8.0E-06 ATATTTTCATT 11 V_POU2F3_01_M01476 TRANSFAC + 69632889 69632904 3.0E-06 TACGATGCAAATAAAA 16 V_POU3F2_02_M00464 TRANSFAC - 69633067 69633076 9.0E-06 TTTTGTTAAT 10 V_SP1_03_M02281 TRANSFAC + 69633270 69633279 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 69633865 69633874 3.0E-06 CCCCTCCCCC 10 V_GATA_C_M00203 TRANSFAC + 69633040 69633050 1.0E-06 AGATAAGAACA 11 V_AFP1_Q6_M00616 TRANSFAC + 69632846 69632856 7.0E-06 ATAAACAGCAT 11 V_SP1_02_M01303 TRANSFAC - 69633268 69633278 8.0E-06 GGGGCGGGGAC 11 V_SP1_02_M01303 TRANSFAC - 69633637 69633647 3.0E-06 GGGGCGGGGGG 11 V_HEN1_01_M00068 TRANSFAC - 69633114 69633135 3.0E-06 GTGGGTCCCACCTGTTTCCACA 22 V_HOXD13_01_M01404 TRANSFAC + 69632893 69632908 8.0E-06 ATGCAAATAAAACTCT 16 V_STAT4_Q4_M01666 TRANSFAC + 69637174 69637187 3.0E-06 TTCTGAGAAGTCCA 14 V_TAL1_GATA1_01_M02243 TRANSFAC + 69634166 69634183 5.0E-06 TTTGGAGCCACAGATAAA 18 V_BARBIE_01_M00238 TRANSFAC - 69633009 69633023 6.0E-06 TTTTAAAGGTGGAAG 15 V_HNF6_Q6_M00639 TRANSFAC - 69637630 69637641 2.0E-06 AATAATCAATCA 12 V_TAL1_Q6_M00993 TRANSFAC - 69636403 69636412 7.0E-06 TCCAGCTGTT 10 V_ZNF219_01_M01122 TRANSFAC + 69633634 69633645 4.0E-06 CGCCCCCCCGCC 12 V_FOXA2_02_M02853 TRANSFAC + 69633064 69633078 2.0E-06 AATATTAACAAAACG 15 V_MYF_01_M01302 TRANSFAC - 69633359 69633370 8.0E-06 CGGCAGCAGCAG 12 V_CEBPE_Q6_M01868 TRANSFAC - 69634495 69634508 8.0E-06 CAACCTTTCAAAAG 14 V_ZFP105_03_M02827 TRANSFAC + 69634831 69634845 1.0E-06 TTTAAAAAACAAGGA 15 V_TBX18_01_M01262 TRANSFAC + 69637063 69637081 1.0E-06 AGGTCTGAAAATATTACAT 19 V_RUNX1_01_M02257 TRANSFAC + 69637034 69637044 0.0E+00 TTCTGTGGTTT 11 V_ARID5A_03_M02736 TRANSFAC + 69633062 69633075 6.0E-06 AAAATATTAACAAA 14 V_HNF1_Q6_M00790 TRANSFAC - 69633057 69633074 1.0E-06 TTGTTAATATTTTCATTT 18 V_E2F1_01_M01250 TRANSFAC - 69633203 69633210 1.0E-05 CGTTTCTT 8 V_KROX_Q6_M00982 TRANSFAC + 69633860 69633873 3.0E-06 CGCGCCCCCTCCCC 14 V_PXRRXR_02_M01153 TRANSFAC + 69633474 69633481 1.0E-05 AGAGTTCA 8 V_LEF1_03_M02878 TRANSFAC - 69637626 69637641 4.0E-06 AATAATCAATCAAGTG 16 V_HNF1_Q6_01_M01011 TRANSFAC + 69633056 69633076 1.0E-06 TAAATGAAAATATTAACAAAA 21 V_NKX25_Q5_M01043 TRANSFAC + 69637623 69637632 7.0E-06 TTTCACTTGA 10 V_TATA_C_M00216 TRANSFAC + 69633015 69633024 5.0E-06 CCTTTAAAAG 10 V_ISRE_01_M00258 TRANSFAC + 69637024 69637038 7.0E-06 CAGTTCCACTTTCTG 15 V_CLOX_01_M00103 TRANSFAC + 69637629 69637643 0.0E+00 TTGATTGATTATTTT 15 V_NFE4_Q5_M02105 TRANSFAC + 69633743 69633754 8.0E-06 CTCCCTCGCCGG 12 V_YY1_Q6_02_M01035 TRANSFAC - 69633424 69633434 7.0E-06 TCCGCCATCTT 11 V_OCT1_04_M00138 TRANSFAC + 69633051 69633073 0.0E+00 ACGGATAAATGAAAATATTAACA 23 V_REX1_03_M01744 TRANSFAC + 69633424 69633435 2.0E-06 AAGATGGCGGAC 12 Tal1_Gata1_MA0140.1 JASPAR + 69634166 69634183 5.0E-06 TTTGGAGCCACAGATAAA 18 V_SOX12_04_M02900 TRANSFAC + 69633193 69633208 8.0E-06 CCAGACACAAAAGAAA 16 V_GRE_C_M00205 TRANSFAC + 69637708 69637723 9.0E-06 GGCTCAAGCAGTCCTC 16 V_GATA1_09_M02254 TRANSFAC + 69633038 69633048 1.0E-06 AAAGATAAGAA 11 V_HFH1_01_M00129 TRANSFAC - 69632844 69632855 7.0E-06 TGCTGTTTATGT 12 V_CDP_02_M00102 TRANSFAC + 69637629 69637643 0.0E+00 TTGATTGATTATTTT 15 V_TBP_06_M02814 TRANSFAC + 69634827 69634842 6.0E-06 GCTTTTTAAAAAACAA 16 V_OCT4_02_M01124 TRANSFAC + 69634253 69634267 0.0E+00 TTTGTGATGAAAATA 15 V_SOX11_03_M02795 TRANSFAC + 69633154 69633170 9.0E-06 AGTAGGACAAAAAAATT 17 V_ISGF4G_04_M02875 TRANSFAC - 69637614 69637627 1.0E-06 TGAAAACATTACAG 14 V_OCT_Q6_M00795 TRANSFAC - 69632892 69632902 5.0E-06 TTATTTGCATC 11 V_FOXO1_Q5_M01216 TRANSFAC + 69634835 69634843 8.0E-06 AAAAACAAG 9 V_NEUROD_02_M01288 TRANSFAC - 69636402 69636413 6.0E-06 TTCCAGCTGTTC 12 V_SP4_Q5_M01273 TRANSFAC + 69633269 69633279 9.0E-06 TCCCCGCCCCC 11 V_MTF1_06_M02882 TRANSFAC + 69633063 69633076 3.0E-06 AAATATTAACAAAA 14 V_POU5F1_01_M01307 TRANSFAC + 69632892 69632901 9.0E-06 GATGCAAATA 10 V_OCT2_01_M01368 TRANSFAC + 69632889 69632904 3.0E-06 TACGATGCAAATAAAA 16 V_HNF1_01_M00132 TRANSFAC - 69633059 69633073 3.0E-06 TGTTAATATTTTCAT 15 V_CNOT3_01_M01253 TRANSFAC + 69633608 69633617 4.0E-06 GGCCGCGCCG 10 V_SIRT6_01_M01797 TRANSFAC + 69633040 69633047 7.0E-06 AGATAAGA 8 V_HEN1_02_M00058 TRANSFAC - 69633114 69633135 4.0E-06 GTGGGTCCCACCTGTTTCCACA 22 V_FOXL1_04_M02753 TRANSFAC + 69633056 69633072 9.0E-06 TAAATGAAAATATTAAC 17 V_GATA3_02_M00350 TRANSFAC + 69633038 69633047 1.0E-06 AAAGATAAGA 10 V_E2F6_01_M01252 TRANSFAC - 69633203 69633210 1.0E-05 CGTTTCTT 8 V_GATA6_01_M00462 TRANSFAC + 69633038 69633047 0.0E+00 AAAGATAAGA 10 V_SMAD3_03_M02794 TRANSFAC + 69633188 69633204 1.0E-05 CTCACCCAGACACAAAA 17 V_FPM315_01_M01587 TRANSFAC - 69633738 69633749 9.0E-06 GAGGGAGGAGCC 12 V_FPM315_01_M01587 TRANSFAC - 69634099 69634110 2.0E-06 AGGGGAGGAGGA 12 V_TBX15_02_M01264 TRANSFAC + 69637055 69637072 9.0E-06 TGGTTCTGAGGTCTGAAA 18 V_PBX1_02_M00124 TRANSFAC - 69637626 69637640 1.0E-06 ATAATCAATCAAGTG 15 V_PBX1_03_M01017 TRANSFAC - 69637628 69637639 6.0E-06 TAATCAATCAAG 12 V_ZFP281_01_M01597 TRANSFAC - 69633865 69633875 7.0E-06 CGGGGGAGGGG 11 V_OCT1_06_M00162 TRANSFAC - 69633056 69633069 5.0E-06 AATATTTTCATTTA 14 V_OCT1_06_M00162 TRANSFAC + 69637071 69637084 6.0E-06 AAATATTACATACA 14 V_IRF1_Q6_01_M01881 TRANSFAC - 69633054 69633067 6.0E-06 TATTTTCATTTATC 14 V_SOX2_01_M02246 TRANSFAC + 69634251 69634265 0.0E+00 CCTTTGTGATGAAAA 15 V_GATA2_03_M00349 TRANSFAC + 69633038 69633047 2.0E-06 AAAGATAAGA 10 V_SRF_06_M02916 TRANSFAC + 69633155 69633171 9.0E-06 GTAGGACAAAAAAATTG 17 V_SRF_06_M02916 TRANSFAC + 69634829 69634845 6.0E-06 TTTTTAAAAAACAAGGA 17 V_SRF_06_M02916 TRANSFAC + 69634830 69634846 2.0E-06 TTTTAAAAAACAAGGAA 17 V_VMAF_01_M00035 TRANSFAC + 69635422 69635440 1.0E-06 AAGTGCTGACTGGGCAGGA 19 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 69637037 69637044 1.0E-05 TGTGGTTT 8 V_HNF1A_Q5_M02013 TRANSFAC - 69633063 69633073 1.0E-06 TGTTAATATTT 11 V_FOXO1_01_M00473 TRANSFAC - 69632938 69632947 5.0E-06 CAAAAACAAT 10 V_FOXO1_01_M00473 TRANSFAC + 69634834 69634843 5.0E-06 AAAAAACAAG 10 V_SOX2_Q6_M01272 TRANSFAC + 69632932 69632947 7.0E-06 CAAGACATTGTTTTTG 16 V_SOX2_Q6_M01272 TRANSFAC + 69634247 69634262 9.0E-06 TTGGCCTTTGTGATGA 16 V_GMEB1_04_M02865 TRANSFAC - 69634536 69634551 0.0E+00 TAAGCAACGTCGTTCA 16 V_SP1_Q2_01_M00933 TRANSFAC + 69633270 69633279 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 69633639 69633648 7.0E-06 CCCCGCCCCT 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 69633925 69633938 2.0E-06 GGCGGGGAAGGGGC 14 V_GATA6_04_M02757 TRANSFAC + 69633035 69633051 3.0E-06 GAGAAAGATAAGAACAA 17 V_TAACC_B_M00331 TRANSFAC - 69632970 69632992 5.0E-06 AAATGCAAAGTGTAACCCCCGGG 23 V_HNF1A_01_M02162 TRANSFAC - 69633060 69633073 1.0E-06 TGTTAATATTTTCA 14 V_RNF96_01_M01199 TRANSFAC - 69633671 69633680 7.0E-06 GCCCGCGGCC 10 V_GLIS2_04_M02863 TRANSFAC + 69633064 69633077 1.0E-06 AATATTAACAAAAC 14 V_PAX4_04_M00380 TRANSFAC - 69637616 69637645 2.0E-06 AGAAAATAATCAATCAAGTGAAAACATTAC 30 V_SOX9_Q4_M01284 TRANSFAC - 69634025 69634035 3.0E-06 ATACAAAGGGC 11 V_NANOG_02_M01247 TRANSFAC - 69634246 69634265 6.0E-06 TTTTCATCACAAAGGCCAAC 20 V_NANOG_02_M01247 TRANSFAC + 69634831 69634850 1.0E-06 TTTAAAAAACAAGGAAACTC 20 V_GATA1_06_M00347 TRANSFAC + 69633038 69633047 4.0E-06 AAAGATAAGA 10 V_OCT4_01_M01125 TRANSFAC + 69634252 69634266 1.0E-06 CTTTGTGATGAAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.