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BCAS2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10286 breast carcinoma amplified sequence 2 chr1 - 115123765 - 115129265 115124265 Transcription Factor Binding Sites   Download all TFBS in the BCAS2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 115124267 115124275 9.0E-06 GTAATTAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 115124266 115124275 5.0E-06 GTAATTAAAT 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 115124266 115124275 2.0E-06 GTAATTAAAT 10 NFIA_NFI_full_dimeric_15_1 SELEX + 115128015 115128029 2.0E-06 ATGGCATGGTGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 115128015 115128029 9.0E-06 CTGGCACCATGCCAT 15 SPIC_ETS_full_monomeric_14_1 SELEX - 115124463 115124476 2.0E-06 AAAAAGGGGCAGTA 14 Zfp652_C2H2_DBD_monomeric_13_1 SELEX - 115128104 115128116 7.0E-06 TTAAAAGGTTAAA 13 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 115124263 115124275 6.0E-06 GTAATTAAATATA 13 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 115124258 115124275 6.0E-06 GTAATTAAATATAACTGA 18 GRHL1_CP2_full_dimeric_12_1 SELEX - 115124600 115124611 5.0E-06 GAAACCAGTTTA 12 TBP_MA0108.2 JASPAR + 115127985 115127999 9.0E-06 CTATAAAAAAAAAAT 15 PDX1_homeodomain_DBD_monomeric_8_1 SELEX - 115124268 115124275 5.0E-06 GTAATTAA 8 NFIX_NFI_full_dimeric_15_2 SELEX + 115128015 115128029 4.0E-06 ATGGCATGGTGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 115128015 115128029 1.0E-06 CTGGCACCATGCCAT 15 ISX_homeodomain_DBD_dimeric_13_1 SELEX + 115124263 115124275 6.0E-06 TATATTTAATTAC 13 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 115124523 115124536 9.0E-06 CCAAAACATTGATA 14 E2F7_E2F_DBD_dimeric_14_1 SELEX - 115124561 115124574 5.0E-06 AGTTCCCTCCAAAA 14 Dlx2_homeodomain_DBD_monomeric_8_1 SELEX - 115124268 115124275 5.0E-06 GTAATTAA 8 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 115124267 115124275 7.0E-06 GTAATTAAA 9 ALX3_homeodomain_full_dimeric_13_1 SELEX + 115124263 115124275 7.0E-06 TATATTTAATTAC 13 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX - 115124267 115124276 1.0E-05 CGTAATTAAA 10 DRGX_homeodomain_DBD_dimeric_13_1 SELEX + 115124263 115124275 9.0E-06 TATATTTAATTAC 13 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX - 115124267 115124276 9.0E-06 CGTAATTAAA 10 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 115124263 115124275 9.0E-06 GTAATTAAATATA 13 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 115124144 115124153 1.0E-05 TCAAGGTTAT 10 VAX1_homeodomain_DBD_monomeric_8_1 SELEX + 115124268 115124275 9.0E-06 TTAATTAC 8 Lhx3_MA0135.1 JASPAR - 115124262 115124274 2.0E-06 TAATTAAATATAA 13 TFCP2_CP2_full_dimeric_10_1 SELEX + 115124601 115124610 4.0E-06 AAACTGGTTT 10 TFCP2_CP2_full_dimeric_10_1 SELEX - 115124601 115124610 3.0E-06 AAACCAGTTT 10 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 115124267 115124276 6.0E-06 CGTAATTAAA 10 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 115128114 115128130 6.0E-06 AAATTCTTGAAATTTTA 17 PRRX1_homeodomain_full_dimeric_11_1 SELEX + 115124264 115124274 8.0E-06 ATATTTAATTA 11 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 115124263 115124275 4.0E-06 TATATTTAATTAC 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 115124263 115124275 4.0E-06 TATATTTAATTAC 13 FEV_MA0156.1 JASPAR - 115124446 115124453 1.0E-05 CAGGAAAT 8 NFIB_NFI_full_dimeric_15_1 SELEX + 115128015 115128029 2.0E-06 ATGGCATGGTGCCAG 15 DUXA_homeodomain_DBD_dimeric_13_1 SELEX + 115124290 115124302 2.0E-06 CTGATGTAATCAC 13 VAX2_homeodomain_DBD_monomeric_8_1 SELEX + 115124268 115124275 5.0E-06 TTAATTAC 8 TEAD1_TEA_full_dimeric_17_1 SELEX - 115128114 115128130 1.0E-06 AAATTCTTGAAATTTTA 17 GRHL1_CP2_DBD_dimeric_10_1 SELEX - 115124601 115124610 5.0E-06 AAACCAGTTT 10 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX + 115124264 115124274 6.0E-06 ATATTTAATTA 11 GSX1_homeodomain_DBD_monomeric_10_1 SELEX - 115124267 115124276 8.0E-06 CGTAATTAAA 10 SPI1_ETS_full_monomeric_14_1 SELEX - 115124463 115124476 2.0E-06 AAAAAGGGGCAGTA 14 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 115124266 115124276 9.0E-06 CGTAATTAAAT 11 TP63_p53l_DBD_dimeric_18_1 SELEX + 115124045 115124062 4.0E-06 GGCAAATTGTAACATGTT 18 TP63_p53l_DBD_dimeric_18_1 SELEX - 115124045 115124062 6.0E-06 AACATGTTACAATTTGCC 18 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 115124266 115124276 7.0E-06 CGTAATTAAAT 11 Meox2_homeodomain_DBD_monomeric_8_1 SELEX + 115124268 115124275 9.0E-06 TTAATTAC 8 V_DMRT4_01_M01149 TRANSFAC - 115124048 115124060 2.0E-06 CATGTTACAATTT 13 V_HOXA9_01_M01351 TRANSFAC + 115127981 115127997 1.0E-06 GCTGCTATAAAAAAAAA 17 V_DBX1_01_M01483 TRANSFAC - 115124258 115124274 2.0E-06 TAATTAAATATAACTGA 17 V_BCL6_Q3_01_M02085 TRANSFAC + 115128118 115128127 9.0E-06 ATTTCAAGAA 10 V_DMRT3_01_M01148 TRANSFAC + 115124048 115124062 4.0E-06 AAATTGTAACATGTT 15 V_DMRT3_01_M01148 TRANSFAC - 115124048 115124062 4.0E-06 AACATGTTACAATTT 15 V_EVI1_04_M00081 TRANSFAC + 115124260 115124274 7.0E-06 AGTTATATTTAATTA 15 V_EVI1_04_M00081 TRANSFAC + 115127983 115127997 6.0E-06 TGCTATAAAAAAAAA 15 V_FOXD3_01_M00130 TRANSFAC + 115124262 115124273 9.0E-06 TTATATTTAATT 12 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 115128110 115128121 3.0E-06 AAATTTTAAAAG 12 V_LRH1_Q5_01_M02098 TRANSFAC - 115124145 115124155 5.0E-06 GATCAAGGTTA 11 V_CREB_Q4_M00178 TRANSFAC + 115124402 115124413 2.0E-06 CGTGACGTAACG 12 V_PROP1_01_M01294 TRANSFAC - 115124264 115124274 4.0E-06 TAATTAAATAT 11 V_FOXJ2_02_M00423 TRANSFAC - 115124524 115124537 3.0E-06 ATATCAATGTTTTG 14 V_CREB_Q4_01_M00917 TRANSFAC + 115124401 115124411 7.0E-06 ACGTGACGTAA 11 V_SOX11_04_M02899 TRANSFAC - 115128034 115128047 2.0E-06 AGAATTGTTGGGAA 14 V_YY1_Q6_M00793 TRANSFAC - 115128011 115128019 7.0E-06 GCCATCTTT 9 V_HOXC4_01_M01369 TRANSFAC - 115124263 115124279 7.0E-06 CGGCGTAATTAAATATA 17 V_CREB_01_M00039 TRANSFAC + 115124404 115124411 1.0E-05 TGACGTAA 8 V_NKX61_03_M01489 TRANSFAC + 115124263 115124279 1.0E-06 TATATTTAATTACGCCG 17 V_HOXC6_01_M01406 TRANSFAC - 115124263 115124279 4.0E-06 CGGCGTAATTAAATATA 17 V_NKX24_01_M01350 TRANSFAC - 115128117 115128132 6.0E-06 CAAAATTCTTGAAATT 16 V_LHX3A_01_M00510 TRANSFAC + 115124266 115124275 3.0E-06 ATTTAATTAC 10 V_ATF4_Q2_M00514 TRANSFAC + 115124402 115124413 3.0E-06 CGTGACGTAACG 12 V_TCFAP2E_04_M02926 TRANSFAC + 115127983 115127996 2.0E-06 TGCTATAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 115127985 115127998 4.0E-06 CTATAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 115127986 115127999 4.0E-06 TATAAAAAAAAAAT 14 V_TAL1_GATA1_01_M02243 TRANSFAC + 115124586 115124603 2.0E-06 TTGGCGGGGAGAGATAAA 18 V_AP1_Q6_M00174 TRANSFAC - 115124087 115124097 6.0E-06 GCTGACTCACT 11 V_ELF4_04_M02850 TRANSFAC + 115127984 115128000 1.0E-06 GCTATAAAAAAAAAATG 17 V_MECP2_01_M01298 TRANSFAC - 115124266 115124280 3.0E-06 CCGGCGTAATTAAAT 15 V_DBX2_01_M01360 TRANSFAC + 115124263 115124278 1.0E-05 TATATTTAATTACGCC 16 V_LMX1_01_M01409 TRANSFAC - 115124263 115124279 6.0E-06 CGGCGTAATTAAATATA 17 V_ZFP105_03_M02827 TRANSFAC + 115127986 115128000 0.0E+00 TATAAAAAAAAAATG 15 V_ZFP105_03_M02827 TRANSFAC + 115127987 115128001 3.0E-06 ATAAAAAAAAAATGG 15 V_ZFP105_03_M02827 TRANSFAC + 115127988 115128002 8.0E-06 TAAAAAAAAAATGGA 15 V_GATA3_05_M02859 TRANSFAC + 115124285 115124306 4.0E-06 TGACACTGATGTAATCACGTTC 22 V_TATA_01_M00252 TRANSFAC + 115127985 115127999 9.0E-06 CTATAAAAAAAAAAT 15 V_RSRFC4_Q2_M00407 TRANSFAC - 115124258 115124274 6.0E-06 TAATTAAATATAACTGA 17 V_IRX4_01_M01410 TRANSFAC - 115124050 115124066 2.0E-06 AAGAAACATGTTACAAT 17 V_HOXB6_01_M01460 TRANSFAC + 115124263 115124278 2.0E-06 TATATTTAATTACGCC 16 V_NKX22_02_M01372 TRANSFAC - 115128116 115128132 8.0E-06 CAAAATTCTTGAAATTT 17 V_E4F1_Q6_01_M02091 TRANSFAC + 115124403 115124412 1.0E-06 GTGACGTAAC 10 V_TATA_C_M00216 TRANSFAC + 115127984 115127993 3.0E-06 GCTATAAAAA 10 V_YY1_Q6_02_M01035 TRANSFAC - 115127995 115128005 2.0E-06 GTCTCCATTTT 11 V_CREBATF_Q6_M00981 TRANSFAC + 115124403 115124411 3.0E-06 GTGACGTAA 9 V_OCT1_04_M00138 TRANSFAC - 115128111 115128133 3.0E-06 ACAAAATTCTTGAAATTTTAAAA 23 Tal1_Gata1_MA0140.1 JASPAR + 115124586 115124603 2.0E-06 TTGGCGGGGAGAGATAAA 18 V_PIT1_01_M01465 TRANSFAC - 115124261 115124277 1.0E-06 GCGTAATTAAATATAAC 17 V_PIT1_01_M01465 TRANSFAC + 115124262 115124278 6.0E-06 TTATATTTAATTACGCC 17 V_BBX_04_M02843 TRANSFAC + 115123831 115123847 3.0E-06 CAATGGTTAAAACTGGA 17 V_MEF2_Q6_01_M00941 TRANSFAC + 115124260 115124271 0.0E+00 AGTTATATTTAA 12 V_HB24_01_M01399 TRANSFAC + 115124262 115124276 1.0E-06 TTATATTTAATTACG 15 V_HB24_01_M01399 TRANSFAC - 115124263 115124277 1.0E-06 GCGTAATTAAATATA 15 V_MAFK_Q3_M02022 TRANSFAC + 115124089 115124099 6.0E-06 TGAGTCAGCTA 11 V_ARID3A_04_M02735 TRANSFAC - 115124263 115124279 7.0E-06 CGGCGTAATTAAATATA 17 V_AP1_01_M00517 TRANSFAC + 115124086 115124098 2.0E-06 CAGTGAGTCAGCT 13 V_CREB_Q2_01_M00916 TRANSFAC - 115124400 115124413 6.0E-06 CGTTACGTCACGTC 14 V_TBP_06_M02814 TRANSFAC - 115124259 115124274 9.0E-06 TAATTAAATATAACTG 16 V_IRX3_01_M01318 TRANSFAC - 115124050 115124066 4.0E-06 AAGAAACATGTTACAAT 17 V_NKX63_01_M01470 TRANSFAC + 115124263 115124279 1.0E-06 TATATTTAATTACGCCG 17 V_IRX5_01_M01472 TRANSFAC - 115124050 115124066 1.0E-06 AAGAAACATGTTACAAT 17 V_IRX5_01_M01472 TRANSFAC + 115124051 115124067 5.0E-06 TTGTAACATGTTTCTTT 17 V_FOXO1_Q5_M01216 TRANSFAC - 115124387 115124395 8.0E-06 CAAAACAAA 9 V_SF1_Q6_01_M01132 TRANSFAC + 115124145 115124153 9.0E-06 TAACCTTGA 9 V_GATA4_Q3_M00632 TRANSFAC - 115124636 115124647 7.0E-06 AGATTAAGGGGA 12 V_ZFP105_04_M02931 TRANSFAC + 115128116 115128132 8.0E-06 AAATTTCAAGAATTTTG 17 V_IRX3_02_M01485 TRANSFAC - 115124050 115124066 5.0E-06 AAGAAACATGTTACAAT 17 V_HOXB7_01_M01396 TRANSFAC - 115124263 115124278 9.0E-06 GGCGTAATTAAATATA 16 V_CREBP1CJUN_01_M00041 TRANSFAC + 115124316 115124323 1.0E-05 TGACGTTA 8 V_ZFP187_04_M02934 TRANSFAC - 115124025 115124040 7.0E-06 CTACCCTGGTCCCTAT 16 V_MTF1_06_M02882 TRANSFAC + 115127985 115127998 1.0E-06 CTATAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 115127987 115128000 7.0E-06 ATAAAAAAAAAATG 14 V_HAND1E47_01_M00222 TRANSFAC + 115124530 115124545 8.0E-06 ATTGATATCTGGAAAG 16 V_CREBP1_Q2_M00179 TRANSFAC + 115124402 115124413 3.0E-06 CGTGACGTAACG 12 V_BRN4_01_M01473 TRANSFAC - 115124261 115124277 3.0E-06 GCGTAATTAAATATAAC 17 V_BRN4_01_M01473 TRANSFAC + 115124262 115124278 8.0E-06 TTATATTTAATTACGCC 17 V_CPHX_01_M01478 TRANSFAC - 115124289 115124302 2.0E-06 GTGATTACATCAGT 14 V_CPHX_01_M01478 TRANSFAC + 115124290 115124303 7.0E-06 CTGATGTAATCACG 14 V_NKX61_02_M01469 TRANSFAC + 115124263 115124278 0.0E+00 TATATTTAATTACGCC 16 V_ZBTB4_04_M02929 TRANSFAC - 115128042 115128057 3.0E-06 TAATCACTGGAGAATT 16 V_CREB_Q2_M00177 TRANSFAC + 115124402 115124413 1.0E-06 CGTGACGTAACG 12 V_RSRFC4_01_M00026 TRANSFAC + 115124259 115124274 1.0E-05 CAGTTATATTTAATTA 16 V_OCT1_06_M00162 TRANSFAC - 115124263 115124276 3.0E-06 CGTAATTAAATATA 14 V_IRX2_01_M01405 TRANSFAC - 115124050 115124066 1.0E-06 AAGAAACATGTTACAAT 17 V_IRX2_01_M01405 TRANSFAC + 115124051 115124067 3.0E-06 TTGTAACATGTTTCTTT 17 V_SRF_06_M02916 TRANSFAC + 115127984 115128000 0.0E+00 GCTATAAAAAAAAAATG 17 V_SRF_06_M02916 TRANSFAC + 115127985 115128001 0.0E+00 CTATAAAAAAAAAATGG 17 V_SRF_06_M02916 TRANSFAC + 115127986 115128002 4.0E-06 TATAAAAAAAAAATGGA 17 V_SRF_06_M02916 TRANSFAC + 115127987 115128003 6.0E-06 ATAAAAAAAAAATGGAG 17 V_HSF2_02_M01244 TRANSFAC + 115128125 115128137 4.0E-06 GAATTTTGTAGAA 13 V_E4F1_Q6_M00694 TRANSFAC - 115124403 115124412 1.0E-06 GTTACGTCAC 10 V_YY1_01_M00059 TRANSFAC - 115127990 115128006 3.0E-06 TGTCTCCATTTTTTTTT 17 V_NFE2_01_M00037 TRANSFAC - 115124088 115124098 3.0E-06 AGCTGACTCAC 11 V_CTF1_01_M01196 TRANSFAC - 115128015 115128028 0.0E+00 TGGCACCATGCCAT 14 V_CTF1_01_M01196 TRANSFAC + 115128016 115128029 4.0E-06 TGGCATGGTGCCAG 14 V_MEF2A_05_M01301 TRANSFAC + 115124260 115124271 0.0E+00 AGTTATATTTAA 12 V_BRN3C_01_M01408 TRANSFAC + 115124263 115124278 5.0E-06 TATATTTAATTACGCC 16 V_HOXA10_01_M01464 TRANSFAC - 115124263 115124278 2.0E-06 GGCGTAATTAAATATA 16 V_HNF4_01_M00134 TRANSFAC - 115128096 115128114 1.0E-05 AAAAGGTTAAAGAGCGAGT 19 V_SOX5_07_M02909 TRANSFAC - 115128034 115128050 5.0E-06 TGGAGAATTGTTGGGAA 17 V_HOXD10_01_M01375 TRANSFAC - 115124262 115124278 2.0E-06 GGCGTAATTAAATATAA 17 V_IRXB3_01_M01377 TRANSFAC - 115124050 115124066 2.0E-06 AAGAAACATGTTACAAT 17 V_ATF_B_M00338 TRANSFAC + 115124315 115124326 9.0E-06 TTGACGTTAGTG 12 TLX1_NFIC_MA0119.1 JASPAR - 115128015 115128028 0.0E+00 TGGCACCATGCCAT 14 TLX1_NFIC_MA0119.1 JASPAR + 115128016 115128029 4.0E-06 TGGCATGGTGCCAG 14 V_FEV_01_M02269 TRANSFAC - 115124446 115124453 1.0E-05 CAGGAAAT 8 V_NANOG_02_M01247 TRANSFAC + 115127987 115128006 4.0E-06 ATAAAAAAAAAATGGAGACA 20 V_HOXC9_01_M01416 TRANSFAC - 115124264 115124279 9.0E-06 CGGCGTAATTAAATAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.