Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CDH16 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1014 cadherin 16, KSP-cadherin chr16 - 66952387 - 66957887 66952887 Transcription Factor Binding Sites   Download all TFBS in the CDH16 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints EOMES_TBX_DBD_dimeric_20_1 SELEX + 66953287 66953306 1.0E-06 TCACACCATGCCATGTGCTA 20 EOMES_TBX_DBD_dimeric_20_1 SELEX - 66953287 66953306 0.0E+00 TAGCACATGGCATGGTGTGA 20 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 66954877 66954889 6.0E-06 CTAAACATAAGCA 13 Pax5_MA0014.1 JASPAR + 66953708 66953727 6.0E-06 AGGGCAGCCAAGCAGAGCCA 20 Sox1_HMG_DBD_dimeric_14_1 SELEX + 66956218 66956231 8.0E-06 TGAACTTGCAGTCA 14 E2F4_E2F_DBD_dimeric_12_2 SELEX + 66956012 66956023 1.0E-06 TTTGGCGCGAAA 12 E2F4_E2F_DBD_dimeric_12_2 SELEX - 66956012 66956023 1.0E-06 TTTCGCGCCAAA 12 PAX6_PAX_DBD_monomeric_19_1 SELEX + 66953186 66953204 3.0E-06 ATGCATGCTTCAGTGCTCA 19 SOX10_HMG_full_dimeric_14_1 SELEX + 66956218 66956231 1.0E-06 TGAACTTGCAGTCA 14 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 66947879 66947894 0.0E+00 CAAGTTCAAGAGGTCA 8 TBR1_TBX_DBD_monomeric_10_1 SELEX - 66953975 66953984 6.0E-06 ACGTGTGAAA 10 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 66953309 66953320 7.0E-06 TCTATTAATACA 12 EBF1_EBF_full_dimeric_14_1 SELEX + 66957331 66957344 3.0E-06 GATCCCCAGGGACT 14 EBF1_EBF_full_dimeric_14_1 SELEX - 66957331 66957344 6.0E-06 AGTCCCTGGGGATC 14 HNF1B_MA0153.1 JASPAR - 66952908 66952919 2.0E-06 TCAATGAGTAAC 12 HNF1B_MA0153.1 JASPAR + 66954117 66954128 7.0E-06 TCAATAAGTGAC 12 Esrrb_MA0141.1 JASPAR - 66953661 66953672 3.0E-06 CCCTCAAGGTCA 12 STAT1_MA0137.2 JASPAR + 66953218 66953232 0.0E+00 TTTTTCCAGGAAACT 15 STAT1_MA0137.2 JASPAR - 66953218 66953232 5.0E-06 AGTTTCCTGGAAAAA 15 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 66953309 66953320 1.0E-05 TCTATTAATACA 12 SOX8_HMG_DBD_dimeric_14_1 SELEX + 66956218 66956231 2.0E-06 TGAACTTGCAGTCA 14 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 66947880 66947897 2.0E-06 AAGTTCAAGAGGTCAGAG 11 E2F7_E2F_DBD_dimeric_14_1 SELEX + 66954953 66954966 1.0E-06 TGTTCCCACCAAAA 14 E2F7_E2F_DBD_dimeric_14_1 SELEX - 66956011 66956024 0.0E+00 CTTTCGCGCCAAAT 14 OTX2_homeodomain_DBD_dimeric_15_1 SELEX - 66953636 66953650 5.0E-06 TTTAATCTTCTTAGG 15 MEF2B_MADS_full_dimeric_12_1 SELEX + 66953309 66953320 1.0E-05 TCTATTAATACA 12 Ar_MA0007.1 JASPAR - 66953034 66953055 5.0E-06 AAAGTAACGTCCAGAACCAGAG 22 NFATC1_NFAT_full_dimeric_14_1 SELEX - 66953133 66953146 9.0E-06 TGTTCCATGCAAAA 14 E2F8_E2F_DBD_dimeric_12_1 SELEX + 66954954 66954965 6.0E-06 GTTCCCACCAAA 12 E2F8_E2F_DBD_dimeric_12_1 SELEX - 66956012 66956023 7.0E-06 TTTCGCGCCAAA 12 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 66952907 66952921 2.0E-06 AGTTACTCATTGACT 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 66952907 66952921 1.0E-06 AGTCAATGAGTAACT 15 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 66954114 66954127 1.0E-06 CAGTCAATAAGTGA 14 SP1_MA0079.2 JASPAR + 66953277 66953286 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 66954202 66954211 9.0E-06 CCCCTCCTCC 10 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX - 66954646 66954661 8.0E-06 TGGGCCAAGGTCCATA 16 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 66953660 66953669 3.0E-06 TCAAGGTCAC 10 SOX9_HMG_full_dimeric_16_3 SELEX + 66956217 66956232 0.0E+00 ATGAACTTGCAGTCAA 16 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 66947880 66947895 0.0E+00 AAGTTCAAGAGGTCAG 9 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 66952908 66952920 3.0E-06 GTTACTCATTGAC 13 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 66952908 66952920 3.0E-06 GTCAATGAGTAAC 13 Stat3_MA0144.1 JASPAR - 66953220 66953229 4.0E-06 TTCCTGGAAA 10 Stat3_MA0144.1 JASPAR + 66953221 66953230 1.0E-06 TTCCAGGAAA 10 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 66953660 66953670 5.0E-06 CTCAAGGTCAC 11 ID4_bHLH_DBD_dimeric_10_1 SELEX - 66954864 66954873 3.0E-06 TGCACCTGTC 10 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 66953659 66953669 3.0E-06 TCAAGGTCACC 11 SPI1_ETS_full_monomeric_14_1 SELEX - 66953229 66953242 8.0E-06 ACATAGGGGAAGTT 14 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 66947880 66947894 0.0E+00 AAGTTCAAGAGGTCA 8 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 66952907 66952921 2.0E-06 AGTTACTCATTGACT 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 66952907 66952921 1.0E-06 AGTCAATGAGTAACT 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 66954115 66954129 9.0E-06 AGTCAATAAGTGACA 15 NRF1_NRF_full_dimeric_12_1 SELEX - 66956143 66956154 1.0E-05 TACGCCTGCGCA 12 Hic1_C2H2_DBD_dimeric_18_1 SELEX - 66954843 66954860 2.0E-06 CTGCCCACCCATGCCCAT 18 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 66947880 66947895 5.0E-06 AAGTTCAAGAGGTCAG 9 E2F1_E2F_DBD_dimeric_12_1 SELEX - 66956012 66956023 3.0E-06 TTTCGCGCCAAA 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 66954877 66954889 4.0E-06 CTAAACATAAGCA 13 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 66947880 66947894 0.0E+00 AAGTTCAAGAGGTCA 8 E2F3_E2F_DBD_dimeric_18_3 SELEX + 66956009 66956026 4.0E-06 GGATTTGGCGCGAAAGGC 18 E2F3_E2F_DBD_dimeric_18_3 SELEX - 66956009 66956026 9.0E-06 GCCTTTCGCGCCAAATCC 18 E2F1_E2F_DBD_monomeric_14_1 SELEX + 66956011 66956024 3.0E-06 ATTTGGCGCGAAAG 14 E2F1_E2F_DBD_monomeric_14_1 SELEX - 66956011 66956024 3.0E-06 CTTTCGCGCCAAAT 14 HNF1A_MA0046.1 JASPAR + 66952907 66952920 7.0E-06 AGTTACTCATTGAC 14 Zfx_MA0146.1 JASPAR - 66952881 66952894 4.0E-06 CGGGGCCAGGCCTG 14 V_KLF15_Q2_M01714 TRANSFAC + 66952967 66952980 5.0E-06 GAGGTGGGGAGATG 14 V_STAT5A_Q6_M01890 TRANSFAC + 66953217 66953229 5.0E-06 CTTTTTCCAGGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 66954436 66954448 2.0E-06 CAGTTTCTAAGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 66954667 66954679 2.0E-06 CAGTTTCTAAGAA 13 V_MYOD_Q6_M00184 TRANSFAC - 66954864 66954873 7.0E-06 TGCACCTGTC 10 V_E2F1_Q3_01_M00938 TRANSFAC + 66956013 66956028 4.0E-06 TTGGCGCGAAAGGCCA 16 V_ZFP410_04_M02936 TRANSFAC - 66954195 66954211 3.0E-06 CCCCTCCTCCCCACATA 17 V_BCL6B_03_M02740 TRANSFAC + 66953218 66953233 3.0E-06 TTTTTCCAGGAAACTT 16 V_SREBP2_Q6_M01177 TRANSFAC - 66953655 66953666 3.0E-06 AGGTCACCTGAG 12 V_ERR3_Q2_01_M02094 TRANSFAC - 66953659 66953671 1.0E-06 CCTCAAGGTCACC 13 V_ERR3_Q2_01_M02094 TRANSFAC + 66953916 66953928 7.0E-06 CTTCAGGGTCACT 13 V_LRH1_Q5_01_M02098 TRANSFAC - 66953661 66953671 9.0E-06 CCTCAAGGTCA 11 V_EOMES_03_M02747 TRANSFAC - 66953114 66953130 9.0E-06 AACAGAGTGTGAAAAGG 17 V_YY1_Q6_M00793 TRANSFAC + 66956025 66956033 7.0E-06 GCCATCTTG 9 V_AP2_Q6_01_M00915 TRANSFAC - 66954140 66954152 6.0E-06 GGGTCCCCAGGCC 13 V_IRF3_05_M02767 TRANSFAC - 66957298 66957311 9.0E-06 CAGAAAGAAAACTG 14 V_MAF_Q6_M00648 TRANSFAC - 66953225 66953240 0.0E+00 ATAGGGGAAGTTTCCT 16 V_GABPA_04_M02858 TRANSFAC - 66953767 66953782 8.0E-06 CCTTCTTCCCACCCTC 16 V_STAT5B_01_M00459 TRANSFAC + 66953218 66953232 1.0E-06 TTTTTCCAGGAAACT 15 V_STAT5B_01_M00459 TRANSFAC - 66953218 66953232 1.0E-06 AGTTTCCTGGAAAAA 15 V_SP1_03_M02281 TRANSFAC + 66953277 66953286 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 66954202 66954211 9.0E-06 CCCCTCCTCC 10 V_GKLF_02_M01588 TRANSFAC + 66952889 66952900 5.0E-06 GCCCCGCCCAGC 12 V_HEN1_01_M00068 TRANSFAC + 66957369 66957390 2.0E-06 TCAGGGCCCAGCTGGGCTCTCC 22 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC + 66954822 66954837 9.0E-06 TGTGCCGAGGGTGAGG 16 V_HNF1_C_M00206 TRANSFAC - 66952905 66952921 2.0E-06 AGTCAATGAGTAACTTG 17 V_HNF6_Q6_M00639 TRANSFAC - 66952913 66952924 3.0E-06 CAAAGTCAATGA 12 V_HNF1_Q6_M00790 TRANSFAC + 66952906 66952923 1.0E-06 AAGTTACTCATTGACTTT 18 V_HIC1_06_M02867 TRANSFAC - 66957471 66957486 6.0E-06 TGATGTGCCCATCATC 16 V_HNF1B_04_M02266 TRANSFAC - 66952908 66952919 2.0E-06 TCAATGAGTAAC 12 V_HNF1B_04_M02266 TRANSFAC + 66954117 66954128 7.0E-06 TCAATAAGTGAC 12 V_IK1_01_M00086 TRANSFAC + 66953266 66953278 9.0E-06 CTCTGGGAATGCC 13 V_E47_02_M00071 TRANSFAC - 66953172 66953187 3.0E-06 ATGAGCAGGTGCTTAC 16 V_HNF1_Q6_01_M01011 TRANSFAC - 66952904 66952924 2.0E-06 CAAAGTCAATGAGTAACTTGG 21 V_SREBP_Q6_M01168 TRANSFAC + 66953283 66953297 9.0E-06 CCCCTCACACCATGC 15 V_NFE4_Q5_M02105 TRANSFAC + 66953789 66953800 6.0E-06 GTCCCTCTCCAG 12 V_ERR1_Q3_M01841 TRANSFAC + 66953658 66953672 8.0E-06 AGGTGACCTTGAGGG 15 V_SPIB_01_M01204 TRANSFAC - 66953226 66953242 3.0E-06 ACATAGGGGAAGTTTCC 17 V_ERBETA_Q5_M01875 TRANSFAC - 66953919 66953933 6.0E-06 GCCAGAGTGACCCTG 15 V_STAT4_Q5_M02117 TRANSFAC + 66953221 66953230 7.0E-06 TTCCAGGAAA 10 V_STAT4_Q5_M02117 TRANSFAC + 66954436 66954445 9.0E-06 TTCTTAGAAA 10 V_STAT4_Q5_M02117 TRANSFAC + 66954667 66954676 9.0E-06 TTCTTAGAAA 10 V_E2F_Q4_02_M00939 TRANSFAC + 66956012 66956020 6.0E-06 TTTGGCGCG 9 V_SP3_Q3_M00665 TRANSFAC - 66954456 66954469 9.0E-06 AGCCTGGGGCAAGG 14 V_STAT3_03_M01595 TRANSFAC - 66953216 66953231 4.0E-06 GTTTCCTGGAAAAAGG 16 V_IK3_01_M00088 TRANSFAC - 66953020 66953032 7.0E-06 GCCAAGGAATACC 13 V_BLIMP1_Q6_M01066 TRANSFAC - 66957281 66957296 3.0E-06 CGGGGAGGGAAATGGG 16 V_SF1_Q6_01_M01132 TRANSFAC + 66953661 66953669 3.0E-06 TGACCTTGA 9 V_SP4_Q5_M01273 TRANSFAC + 66953276 66953286 5.0E-06 GCCCCTCCCCC 11 V_E2F_03_M00516 TRANSFAC - 66956012 66956023 1.0E-06 TTTCGCGCCAAA 12 V_E2F_Q6_01_M00920 TRANSFAC - 66956011 66956022 0.0E+00 TTCGCGCCAAAT 12 V_SMAD4_04_M02898 TRANSFAC + 66957288 66957304 7.0E-06 CCCTCCCCGCCAGTTTT 17 V_ERR2_01_M01589 TRANSFAC - 66953658 66953669 0.0E+00 TCAAGGTCACCT 12 V_MEIS1_01_M00419 TRANSFAC + 66953600 66953611 5.0E-06 CAGTGACAGGGC 12 V_MEIS1_01_M00419 TRANSFAC + 66954122 66954133 9.0E-06 AAGTGACAGAGC 12 V_ZFP206_01_M01742 TRANSFAC + 66956143 66956153 4.0E-06 TGCGCAGGCGT 11 V_STAT1STAT1_Q3_M01212 TRANSFAC + 66953219 66953231 2.0E-06 TTTTCCAGGAAAC 13 V_RSRFC4_01_M00026 TRANSFAC + 66953307 66953322 8.0E-06 TCTCTATTAATACACA 16 V_E2F_Q3_01_M00918 TRANSFAC + 66956012 66956020 6.0E-06 TTTGGCGCG 9 V_ESRRA_03_M02748 TRANSFAC - 66953656 66953672 3.0E-06 CCCTCAAGGTCACCTGA 17 V_ZFP281_01_M01597 TRANSFAC - 66953277 66953287 3.0E-06 AGGGGGAGGGG 11 V_E2F_Q4_01_M00919 TRANSFAC - 66956011 66956021 0.0E+00 TCGCGCCAAAT 11 V_STAT5A_01_M00457 TRANSFAC + 66953218 66953232 2.0E-06 TTTTTCCAGGAAACT 15 V_STAT5A_01_M00457 TRANSFAC - 66953218 66953232 7.0E-06 AGTTTCCTGGAAAAA 15 V_ZFP281_04_M02831 TRANSFAC + 66953275 66953289 8.0E-06 TGCCCCTCCCCCTCA 15 V_ERR1_Q2_01_M02093 TRANSFAC - 66953658 66953668 5.0E-06 CAAGGTCACCT 11 V_HNF1A_Q5_M02013 TRANSFAC + 66952907 66952917 5.0E-06 AGTTACTCATT 11 V_SMAD3_Q6_M00701 TRANSFAC + 66953342 66953350 1.0E-05 TGTCTGCCT 9 V_UF1H3BETA_Q6_M01068 TRANSFAC - 66953276 66953289 2.0E-06 TGAGGGGGAGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC - 66953275 66953287 8.0E-06 AGGGGGAGGGGCA 13 V_HNF1A_01_M02162 TRANSFAC + 66952907 66952920 7.0E-06 AGTTACTCATTGAC 14 V_SREBP1_Q5_M01173 TRANSFAC + 66953283 66953297 5.0E-06 CCCCTCACACCATGC 15 V_STAT1_Q6_M01823 TRANSFAC + 66953221 66953230 2.0E-06 TTCCAGGAAA 10 V_GLIS2_04_M02863 TRANSFAC - 66953307 66953320 1.0E-06 TGTATTAATAGAGA 14 V_STAT1_05_M01260 TRANSFAC - 66953211 66953232 0.0E+00 AGTTTCCTGGAAAAAGGAATAT 22

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.