Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MED12 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9968 mediator complex subunit 12 chrX + 70333405 - 70338905 70338405 Transcription Factor Binding Sites   Download all TFBS in the MED12 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 70338155 70338172 8.0E-06 AATGCAAATATTATTGAA 18 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX - 70339123 70339136 7.0E-06 AAGGTGAAAGGGCA 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 70338782 70338792 1.0E-05 GCCCCGCCCCC 11 FOXL1_forkhead_full_dimeric_13_1 SELEX + 70337950 70337962 2.0E-06 GAAAAACAAACAA 13 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX - 70339123 70339136 8.0E-06 AAGGTGAAAGGGCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX - 70339123 70339136 4.0E-06 AAGGTGAAAGGGCA 14 POU3F4_POU_DBD_monomeric_9_1 SELEX + 70338155 70338163 7.0E-06 AATGCAAAT 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 70338157 70338170 1.0E-06 CAATAATATTTGCA 14 Ar_MA0007.1 JASPAR + 70339088 70339109 5.0E-06 TAAGTAACGATCTGTTCTACAC 22 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 70338157 70338170 1.0E-06 CAATAATATTTGCA 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 70337951 70337961 1.0E-06 AAAAACAAACA 11 SP1_MA0079.2 JASPAR - 70338782 70338791 7.0E-06 CCCCGCCCCC 10 FOXI1_MA0042.1 JASPAR - 70337953 70337964 1.0E-06 TCTTGTTTGTTT 12 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX - 70339122 70339136 4.0E-06 AAGGTGAAAGGGCAG 15 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 70338157 70338170 9.0E-06 CAATAATATTTGCA 14 znf143_MA0088.1 JASPAR - 70338763 70338782 1.0E-05 CCATTCCCAGCCGTCAGTGC 20 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX - 70339123 70339136 2.0E-06 AAGGTGAAAGGGCA 14 YY2_C2H2_full_monomeric_11_1 SELEX - 70338602 70338612 4.0E-06 GCCGCCATCTT 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 70337951 70337961 1.0E-06 AAAAACAAACA 11 VENTX_homeodomain_DBD_dimeric_21_1 SELEX + 70339182 70339202 3.0E-06 CCCTAAGGAAAAAACAACTAA 21 POU1F1_POU_DBD_monomeric_17_1 SELEX + 70338035 70338051 2.0E-06 CTCATGCATACATAGTT 17 Pou5f1_MA0142.1 JASPAR + 70338031 70338045 2.0E-06 CTTTCTCATGCATAC 15 MAFK_bZIP_full_monomeric_12_1 SELEX + 70338302 70338313 2.0E-06 ATTTTTGCTGAG 12 Sox2_MA0143.1 JASPAR + 70338030 70338044 2.0E-06 TCTTTCTCATGCATA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 70337949 70337961 1.0E-06 AGAAAAACAAACA 13 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX - 70339123 70339136 5.0E-06 AAGGTGAAAGGGCA 14 NFIA_NFI_full_monomeric_10_1 SELEX + 70339295 70339304 9.0E-06 AGTGCCAAGA 10 V_FOXP1_01_M00987 TRANSFAC - 70338146 70338165 3.0E-06 ATATTTGCATTGGTTAGGAA 20 V_HNF3B_01_M00131 TRANSFAC - 70337952 70337966 1.0E-06 TTTCTTGTTTGTTTT 15 V_FREAC7_01_M00293 TRANSFAC + 70337950 70337965 6.0E-06 GAAAAACAAACAAGAA 16 V_APOLYA_B_M00310 TRANSFAC + 70339198 70339212 8.0E-06 ACTAAACGCCGCTTT 15 V_POU3F3_01_M03090 TRANSFAC - 70338032 70338048 3.0E-06 TATGTATGCATGAGAAA 17 V_AR_02_M00953 TRANSFAC + 70339085 70339111 3.0E-06 CTTTAAGTAACGATCTGTTCTACACGG 27 V_BTEB3_Q5_M01865 TRANSFAC + 70338073 70338085 3.0E-06 TTGAAGGAGGTGT 13 V_STAT3STAT3_Q3_M01220 TRANSFAC - 70338444 70338457 9.0E-06 TTGCCGGAAACTAC 14 V_FOXD3_01_M00130 TRANSFAC - 70337953 70337964 9.0E-06 TCTTGTTTGTTT 12 V_BCL6_01_M01183 TRANSFAC - 70337951 70337966 4.0E-06 TTTCTTGTTTGTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 70337952 70337967 6.0E-06 TTTTCTTGTTTGTTTT 16 V_DEAF1_02_M01002 TRANSFAC + 70338435 70338459 5.0E-06 CTTCCCTCGGTAGTTTCCGGCAATG 25 V_DEAF1_01_M01001 TRANSFAC + 70338435 70338459 0.0E+00 CTTCCCTCGGTAGTTTCCGGCAATG 25 V_POU5F1_02_M02245 TRANSFAC + 70338031 70338045 2.0E-06 CTTTCTCATGCATAC 15 V_SP1_Q6_01_M00931 TRANSFAC + 70338783 70338792 4.0E-06 GGGGCGGGGC 10 V_OCT1_Q5_01_M00930 TRANSFAC - 70338155 70338165 3.0E-06 ATATTTGCATT 11 V_EGR_Q6_M00807 TRANSFAC - 70338364 70338374 7.0E-06 GTGGGGGCGGA 11 V_OCTAMER_01_M01324 TRANSFAC - 70338032 70338048 3.0E-06 TATGTATGCATGAGAAA 17 V_FOXO3A_Q1_M01137 TRANSFAC + 70339190 70339201 7.0E-06 AAAAAACAACTA 12 V_YY1_Q6_M00793 TRANSFAC - 70338601 70338609 7.0E-06 GCCATCTTG 9 V_HNF3_Q6_01_M01012 TRANSFAC - 70337949 70337966 0.0E+00 TTTCTTGTTTGTTTTTCT 18 V_HNF3_Q6_01_M01012 TRANSFAC - 70338152 70338169 2.0E-06 AATAATATTTGCATTGGT 18 V_SP1_03_M02281 TRANSFAC - 70338782 70338791 7.0E-06 CCCCGCCCCC 10 V_PPAR_DR1_Q2_M00763 TRANSFAC + 70339123 70339135 1.0E-05 TGCCCTTTCACCT 13 V_COUPTF_Q6_M01036 TRANSFAC + 70339118 70339140 8.0E-06 CCTCCTGCCCTTTCACCTTGTTC 23 V_AR_03_M00956 TRANSFAC + 70339085 70339111 9.0E-06 CTTTAAGTAACGATCTGTTCTACACGG 27 V_PPARGRXRA_01_M02262 TRANSFAC - 70339123 70339137 3.0E-06 CAAGGTGAAAGGGCA 15 V_GC_01_M00255 TRANSFAC - 70338381 70338394 9.0E-06 AGGAGGTGGGGCCT 14 V_HELIOSA_02_M01004 TRANSFAC + 70339184 70339194 6.0E-06 CTAAGGAAAAA 11 V_ZFP105_03_M02827 TRANSFAC + 70337951 70337965 2.0E-06 AAAAACAAACAAGAA 15 V_ZFP105_03_M02827 TRANSFAC + 70337954 70337968 2.0E-06 AACAAACAAGAAAAG 15 V_HNF3G_Q4_M02015 TRANSFAC - 70337954 70337961 7.0E-06 TGTTTGTT 8 V_ARID5A_03_M02736 TRANSFAC - 70338155 70338168 9.0E-06 ATAATATTTGCATT 14 V_E2F1_01_M01250 TRANSFAC - 70338116 70338123 1.0E-05 CGTTTCTT 8 V_SP1_Q6_M00196 TRANSFAC - 70338361 70338373 7.0E-06 TGGGGGCGGAGCT 13 V_SP1_Q6_M00196 TRANSFAC + 70338781 70338793 1.0E-06 GGGGGGCGGGGCG 13 V_IRF3_Q3_M01279 TRANSFAC - 70339185 70339197 9.0E-06 TGTTTTTTCCTTA 13 V_HNF3_Q6_M00791 TRANSFAC + 70337951 70337963 1.0E-06 AAAAACAAACAAG 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 70337951 70337961 0.0E+00 TGTTTGTTTTT 11 V_YY1_Q6_02_M01035 TRANSFAC - 70338602 70338612 7.0E-06 GCCGCCATCTT 11 V_REX1_03_M01744 TRANSFAC + 70338602 70338613 0.0E+00 AAGATGGCGGCC 12 V_PPARG_03_M00528 TRANSFAC - 70339123 70339139 1.0E-06 AACAAGGTGAAAGGGCA 17 V_GR_Q6_M00192 TRANSFAC + 70339089 70339107 6.0E-06 AAGTAACGATCTGTTCTAC 19 V_HFH1_01_M00129 TRANSFAC - 70337953 70337964 9.0E-06 TCTTGTTTGTTT 12 V_OCT1_B_M00342 TRANSFAC + 70338155 70338164 2.0E-06 AATGCAAATA 10 V_ISGF4G_04_M02875 TRANSFAC + 70339188 70339201 4.0E-06 GGAAAAAACAACTA 14 V_OCT_Q6_M00795 TRANSFAC - 70338155 70338165 3.0E-06 ATATTTGCATT 11 V_FOXO1_Q5_M01216 TRANSFAC + 70337951 70337959 1.0E-06 AAAAACAAA 9 V_FOXO1_Q5_M01216 TRANSFAC + 70339191 70339199 5.0E-06 AAAAACAAC 9 V_SP4_Q5_M01273 TRANSFAC - 70338782 70338792 1.0E-06 GCCCCGCCCCC 11 V_OTX2_Q3_M01719 TRANSFAC + 70337993 70338005 1.0E-06 TGAGGGATTAGAG 13 V_YY1_03_M02044 TRANSFAC - 70338601 70338612 1.0E-06 GCCGCCATCTTG 12 V_POU5F1_01_M01307 TRANSFAC + 70338155 70338164 1.0E-06 AATGCAAATA 10 V_TAL1_01_M01591 TRANSFAC + 70339140 70339152 7.0E-06 CCTTCTTTTCTCC 13 NR1H2_RXRA_MA0115.1 JASPAR - 70339121 70339137 4.0E-06 CAAGGTGAAAGGGCAGG 17 V_E2F6_01_M01252 TRANSFAC - 70338116 70338123 1.0E-05 CGTTTCTT 8 V_SOX2_01_M02246 TRANSFAC + 70338030 70338044 2.0E-06 TCTTTCTCATGCATA 15 V_HFH3_01_M00289 TRANSFAC - 70337952 70337964 1.0E-06 TCTTGTTTGTTTT 13 V_FOXJ2_01_M00422 TRANSFAC + 70337949 70337966 3.0E-06 AGAAAAACAAACAAGAAA 18 V_HOMEZ_01_M01429 TRANSFAC - 70339087 70339103 9.0E-06 AACAGATCGTTACTTAA 17 V_PR_02_M00957 TRANSFAC + 70339085 70339111 3.0E-06 CTTTAAGTAACGATCTGTTCTACACGG 27 V_HNF3B_Q6_M02014 TRANSFAC - 70337954 70337962 1.0E-05 TTGTTTGTT 9 V_PIT1_Q6_M00802 TRANSFAC - 70338157 70338174 5.0E-06 TCTTCAATAATATTTGCA 18 V_SP1_Q2_01_M00933 TRANSFAC - 70338782 70338791 4.0E-06 CCCCGCCCCC 10 V_FOXO4_01_M00472 TRANSFAC + 70337951 70337961 5.0E-06 AAAAACAAACA 11 V_FOXO4_01_M00472 TRANSFAC + 70339191 70339201 8.0E-06 AAAAACAACTA 11 V_HNF4_01_M00134 TRANSFAC - 70339120 70339138 5.0E-06 ACAAGGTGAAAGGGCAGGA 19 V_CMAF_01_M01070 TRANSFAC + 70338302 70338320 2.0E-06 ATTTTTGCTGAGTGAAATC 19 V_SP1_Q4_01_M00932 TRANSFAC + 70338781 70338793 2.0E-06 GGGGGGCGGGGCG 13 V_DEC_Q1_M00997 TRANSFAC + 70339061 70339073 4.0E-06 GTCCAAGTGAACG 13 V_DMRT1_01_M01146 TRANSFAC - 70338041 70338055 4.0E-06 TAGAAACTATGTATG 15 PPARG_RXRA_MA0065.2 JASPAR - 70339123 70339137 3.0E-06 CAAGGTGAAAGGGCA 15 V_NANOG_02_M01247 TRANSFAC - 70338025 70338044 3.0E-06 TATGCATGAGAAAGAACCTA 20 V_OCT4_01_M01125 TRANSFAC + 70338031 70338045 3.0E-06 CTTTCTCATGCATAC 15 V_PPARG_01_M00512 TRANSFAC - 70339119 70339139 8.0E-06 AACAAGGTGAAAGGGCAGGAG 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.