Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SEC16A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9919 SEC16 homolog A (S. cerevisiae) chr9 - 139377007 - 139382507 139377507 Transcription Factor Binding Sites   Download all TFBS in the SEC16A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 139379640 139379658 4.0E-06 TCACCTGCAGGGGGCGCGG 19 TBX1_TBX_DBD_dimeric_20_2 SELEX + 139379612 139379631 2.0E-06 TTGGCTCCTAGGGGTGTGAA 20 TBX1_TBX_DBD_dimeric_20_2 SELEX - 139379612 139379631 4.0E-06 TTCACACCCCTAGGAGCCAA 20 IRF7_IRF_DBD_dimeric_14_1 SELEX - 139378055 139378068 8.0E-06 CTTAAAACGAAAAA 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 139377926 139377936 1.0E-05 GCCCCGCCCCC 11 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 139376952 139376965 8.0E-06 CAATCAAGAAATTA 14 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 139377925 139377938 7.0E-06 GGCCCCGCCCCCCT 14 FOXL1_forkhead_full_dimeric_13_1 SELEX + 139376964 139376976 2.0E-06 TACAAACAAACAA 13 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 139379708 139379719 8.0E-06 AAACTGCTGAGA 12 STAT1_MA0137.2 JASPAR - 139376664 139376678 7.0E-06 TTCTTCCTAGAAGTG 15 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX - 139378054 139378065 2.0E-06 AAAACGAAAAAA 12 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 139376965 139376975 2.0E-06 ACAAACAAACA 11 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 139376952 139376965 8.0E-06 CAATCAAGAAATTA 14 XBP1_bZIP_DBD_dimeric_14_1 SELEX - 139379168 139379181 3.0E-06 GGTGCCACGTCAGC 14 SP1_MA0079.2 JASPAR + 139377927 139377936 7.0E-06 CCCCGCCCCC 10 FOXI1_MA0042.1 JASPAR - 139376967 139376978 2.0E-06 AGTTGTTTGTTT 12 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX + 139379121 139379133 6.0E-06 TGCCACGCCAGCA 13 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX - 139379167 139379179 1.0E-06 TGCCACGTCAGCC 13 RFX3_RFX_DBD_dimeric_15_1 SELEX - 139378318 139378332 5.0E-06 CGTAACCAGGCAACC 15 SP4_C2H2_full_monomeric_17_1 SELEX + 139377561 139377577 9.0E-06 CTGGCCCCGCCCCTCGG 17 SP4_C2H2_full_monomeric_17_1 SELEX + 139377783 139377799 1.0E-06 TTGGCCCCGCCCCTCTT 17 SP4_C2H2_full_monomeric_17_1 SELEX + 139377890 139377906 7.0E-06 TTGGCCCCGCCCCTCGG 17 SP4_C2H2_full_monomeric_17_1 SELEX + 139377923 139377939 1.0E-06 GTGGCCCCGCCCCCCTC 17 SP4_C2H2_full_monomeric_17_1 SELEX + 139377965 139377981 5.0E-06 TTGGCCCCGCCCCTCGC 17 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 139376931 139376943 8.0E-06 GGATGTTGCAACA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX - 139376931 139376944 8.0E-06 AGGATGTTGCAACA 14 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 139376965 139376975 2.0E-06 ACAAACAAACA 11 RFX4_RFX_DBD_dimeric_15_1 SELEX - 139378318 139378332 6.0E-06 CGTAACCAGGCAACC 15 Stat3_MA0144.1 JASPAR + 139376667 139376676 7.0E-06 TTCTAGGAAG 10 CREB3L1_bZIP_full_dimeric_14_1 SELEX - 139379167 139379180 1.0E-06 GTGCCACGTCAGCC 14 Pou5f1_MA0142.1 JASPAR - 139376875 139376889 3.0E-06 CTTTGTGATGGAAGT 15 SPDEF_ETS_full_monomeric_11_1 SELEX - 139377486 139377496 7.0E-06 AGCCGGATGTG 11 EMX1_homeodomain_DBD_dimeric_14_1 SELEX + 139376952 139376965 9.0E-06 CAATCAAGAAATTA 14 NRF1_NRF_full_dimeric_12_1 SELEX + 139378256 139378267 2.0E-06 CGCGCATGCGCC 12 ELF5_MA0136.1 JASPAR + 139379839 139379847 9.0E-06 AACTTCCTT 9 Sox2_MA0143.1 JASPAR - 139376876 139376890 4.0E-06 CCTTTGTGATGGAAG 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 139376963 139376975 7.0E-06 TTACAAACAAACA 13 V_FOXP1_01_M00987 TRANSFAC - 139376953 139376972 0.0E+00 TTGTTTGTAATTTCTTGATT 20 V_STAT5A_Q6_M01890 TRANSFAC + 139376663 139376675 2.0E-06 TCACTTCTAGGAA 13 V_BCL6_Q3_01_M02085 TRANSFAC - 139376667 139376676 2.0E-06 CTTCCTAGAA 10 V_DUXL_01_M01390 TRANSFAC + 139376947 139376963 1.0E-05 TCGCCCAATCAAGAAAT 17 V_YY1_02_M00069 TRANSFAC + 139377471 139377490 0.0E+00 CCGCAGCCATCTTGGCACAT 20 V_HNF1_02_M01379 TRANSFAC - 139376731 139376747 5.0E-06 CCGATGTTAACCAAAGA 17 V_HMGIY_Q3_M01010 TRANSFAC - 139376955 139376969 1.0E-06 TTTGTAATTTCTTGA 15 V_POU5F1_02_M02245 TRANSFAC - 139376875 139376889 3.0E-06 CTTTGTGATGGAAGT 15 V_MAFB_03_M02879 TRANSFAC + 139376649 139376663 4.0E-06 AACTTGCAAAAGTAT 15 V_SP1_Q6_01_M00931 TRANSFAC - 139377552 139377561 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 139377564 139377573 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 139377628 139377637 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 139377786 139377795 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 139377893 139377902 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 139377926 139377935 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 139377968 139377977 4.0E-06 GGGGCGGGGC 10 V_YY1_Q6_M00793 TRANSFAC + 139377476 139377484 7.0E-06 GCCATCTTG 9 V_HNF3_Q6_01_M01012 TRANSFAC - 139376959 139376976 5.0E-06 TTGTTTGTTTGTAATTTC 18 V_GABPA_04_M02858 TRANSFAC + 139379663 139379678 2.0E-06 CTTTCTTCCCCCTCTT 16 V_GABPA_04_M02858 TRANSFAC + 139379672 139379687 7.0E-06 CCCTCTTCTCCCTAAT 16 V_FOXJ1_03_M02750 TRANSFAC + 139376962 139376977 9.0E-06 ATTACAAACAAACAAC 16 V_SP1_03_M02281 TRANSFAC + 139377927 139377936 7.0E-06 CCCCGCCCCC 10 V_NKX24_01_M01350 TRANSFAC - 139377068 139377083 2.0E-06 TAAGACTCTTAACTTT 16 V_SP1_02_M01303 TRANSFAC - 139377686 139377696 8.0E-06 GGGGCGGGGGC 11 V_TCFAP2E_04_M02926 TRANSFAC - 139378052 139378065 4.0E-06 AAAACGAAAAAAGA 14 V_HBP1_Q2_M01661 TRANSFAC + 139378090 139378098 3.0E-06 TTCAATCAA 9 V_SRF_C_M00215 TRANSFAC - 139382036 139382050 8.0E-06 ACCTTACATGGTAAG 15 V_COMP1_01_M00057 TRANSFAC - 139379671 139379694 3.0E-06 ACTCAGGATTAGGGAGAAGAGGGG 24 V_ZNF219_01_M01122 TRANSFAC + 139377736 139377747 5.0E-06 CGCCCCCCGCCC 12 V_GC_01_M00255 TRANSFAC - 139377626 139377639 4.0E-06 GAGGGGCGGGGCCG 14 V_GC_01_M00255 TRANSFAC - 139380328 139380341 5.0E-06 AATGGGAGGAGCTG 14 V_HELIOSA_02_M01004 TRANSFAC + 139376613 139376623 7.0E-06 ATGAGGAAAAA 11 V_FOXA2_02_M02853 TRANSFAC + 139376958 139376972 8.0E-06 AGAAATTACAAACAA 15 V_HNF3G_Q4_M02015 TRANSFAC - 139376968 139376975 7.0E-06 TGTTTGTT 8 V_NKX61_01_M00424 TRANSFAC - 139376957 139376969 5.0E-06 TTTGTAATTTCTT 13 V_E12_Q6_M00693 TRANSFAC - 139377979 139377989 7.0E-06 GGCAGGTGGCG 11 V_RFX1_01_M00280 TRANSFAC - 139378317 139378333 1.0E-06 CCGTAACCAGGCAACCA 17 V_SP4_03_M02810 TRANSFAC + 139377824 139377840 1.0E-06 CGTCCCGCCCCCTTAGC 17 V_SP4_03_M02810 TRANSFAC + 139377925 139377941 5.0E-06 GGCCCCGCCCCCCTCCG 17 V_KROX_Q6_M00982 TRANSFAC + 139377359 139377372 6.0E-06 CTCGCCCCCTCACC 14 V_KROX_Q6_M00982 TRANSFAC + 139377674 139377687 8.0E-06 CCCGCCCCCTCTGC 14 V_KROX_Q6_M00982 TRANSFAC + 139377683 139377696 4.0E-06 TCTGCCCCCGCCCC 14 V_IRX4_01_M01410 TRANSFAC + 139376749 139376765 6.0E-06 ATCACACATGTAAAACA 17 V_SP1_Q6_M00196 TRANSFAC - 139377551 139377563 6.0E-06 CAGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 139377563 139377575 1.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 139377627 139377639 1.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 139377686 139377698 9.0E-06 GAGGGGCGGGGGC 13 V_SP1_Q6_M00196 TRANSFAC - 139377731 139377743 8.0E-06 GGGGGGCGGGACG 13 V_SP1_Q6_M00196 TRANSFAC - 139377785 139377797 1.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 139377824 139377836 5.0E-06 AGGGGGCGGGACG 13 V_SP1_Q6_M00196 TRANSFAC - 139377892 139377904 1.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 139377925 139377937 0.0E+00 GGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 139377967 139377979 1.0E-06 GAGGGGCGGGGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 139377290 139377303 5.0E-06 CGCGGAGGAGAGGA 14 V_AP2BETA_Q3_M01858 TRANSFAC + 139377199 139377214 6.0E-06 GCTCTGGCCCGGGGGC 16 V_RFX4_04_M02893 TRANSFAC + 139378320 139378334 3.0E-06 TTGCCTGGTTACGGC 15 V_GADP_01_M01258 TRANSFAC - 139378355 139378366 9.0E-06 AACTTCCGGCGC 12 V_DUXBL_01_M02968 TRANSFAC + 139376947 139376963 1.0E-05 TCGCCCAATCAAGAAAT 17 V_REX1_03_M01744 TRANSFAC - 139377472 139377483 1.0E-06 AAGATGGCTGCG 12 V_SP1SP3_Q4_M01219 TRANSFAC + 139377675 139377685 5.0E-06 CCGCCCCCTCT 11 V_EVI1_Q3_M02002 TRANSFAC - 139376578 139376586 4.0E-06 TATCTTGTA 9 V_DAX1_01_M01248 TRANSFAC + 139379560 139379579 3.0E-06 AAAATGCAAGGTCTCTGGAC 20 V_KLF7_03_M02773 TRANSFAC + 139377625 139377640 4.0E-06 TCGGCCCCGCCCCTCG 16 V_KLF7_03_M02773 TRANSFAC + 139377783 139377798 1.0E-06 TTGGCCCCGCCCCTCT 16 V_KLF7_03_M02773 TRANSFAC + 139377890 139377905 2.0E-06 TTGGCCCCGCCCCTCG 16 V_KLF7_03_M02773 TRANSFAC + 139377965 139377980 2.0E-06 TTGGCCCCGCCCCTCG 16 V_STAF_02_M00264 TRANSFAC - 139376700 139376720 9.0E-06 ATCCCCCATGTGGCAATACGA 21 V_CTCF_02_M01259 TRANSFAC + 139379637 139379656 2.0E-06 ACATCACCTGCAGGGGGCGC 20 V_STAT3_03_M01595 TRANSFAC + 139376665 139376680 9.0E-06 ACTTCTAGGAAGAACC 16 V_OCT4_02_M01124 TRANSFAC - 139376874 139376888 5.0E-06 TTTGTGATGGAAGTG 15 V_CTCF_01_M01200 TRANSFAC + 139379639 139379658 1.0E-06 ATCACCTGCAGGGGGCGCGG 20 V_EVI1_06_M00011 TRANSFAC + 139376579 139376587 9.0E-06 ACAAGATAC 9 V_HOXD9_Q2_M01834 TRANSFAC + 139379554 139379563 6.0E-06 AGGCATAAAA 10 V_ZFP691_04_M02937 TRANSFAC - 139379210 139379226 5.0E-06 AATCTGACTCCTGAAAG 17 V_SP4_Q5_M01273 TRANSFAC + 139377552 139377562 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC + 139377564 139377574 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC + 139377628 139377638 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC + 139377786 139377796 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC + 139377893 139377903 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC + 139377926 139377936 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 139377968 139377978 8.0E-06 GCCCCGCCCCT 11 V_HFH8_01_M00294 TRANSFAC - 139376966 139376978 4.0E-06 AGTTGTTTGTTTG 13 V_ZFP105_04_M02931 TRANSFAC - 139382016 139382032 6.0E-06 TTGGCTCAATGATTCCA 17 V_ZFP187_04_M02934 TRANSFAC + 139379068 139379083 6.0E-06 CCACCCTTGTCCCCAG 16 V_MTF1_06_M02882 TRANSFAC + 139376960 139376973 4.0E-06 AAATTACAAACAAA 14 V_MYF6_04_M02885 TRANSFAC - 139379652 139379666 1.0E-06 AAAGACAGCCGCGCC 15 V_MYOD_Q6_01_M00929 TRANSFAC - 139377976 139377993 7.0E-06 GCCGGGCAGGTGGCGAGG 18 V_SMAD4_04_M02898 TRANSFAC + 139377783 139377799 1.0E-05 TTGGCCCCGCCCCTCTT 17 V_FOXL1_02_M02857 TRANSFAC - 139378055 139378070 9.0E-06 ATCTTAAAACGAAAAA 16 V_TCF1_06_M02815 TRANSFAC - 139376731 139376747 9.0E-06 CCGATGTTAACCAAAGA 17 V_ZFP206_01_M01742 TRANSFAC + 139378256 139378266 2.0E-06 CGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC + 139378304 139378314 8.0E-06 TGCGCCTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 139378305 139378315 4.0E-06 CGCGCAGGCGC 11 V_FPM315_01_M01587 TRANSFAC - 139377346 139377357 6.0E-06 GCGGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC - 139377648 139377659 7.0E-06 CGGGGAGGACGG 12 V_TBX15_02_M01264 TRANSFAC - 139377601 139377618 4.0E-06 GGCTGTGAAGGGCTGAAA 18 V_NRF1_Q6_M00652 TRANSFAC - 139378256 139378265 4.0E-06 CGCATGCGCG 10 V_ZFP281_01_M01597 TRANSFAC + 139376713 139376723 5.0E-06 TGGGGGATGGG 11 V_TBX22_01_M01195 TRANSFAC + 139376650 139376668 8.0E-06 ACTTGCAAAAGTATCACTT 19 V_SOX2_01_M02246 TRANSFAC - 139376876 139376890 4.0E-06 CCTTTGTGATGGAAG 15 V_ZFP281_04_M02831 TRANSFAC - 139376711 139376725 8.0E-06 TTCCCATCCCCCATG 15 V_HFH3_01_M00289 TRANSFAC - 139376966 139376978 3.0E-06 AGTTGTTTGTTTG 13 V_FOXJ2_01_M00422 TRANSFAC + 139376963 139376980 0.0E+00 TTACAAACAAACAACTCT 18 V_HNF3B_Q6_M02014 TRANSFAC - 139376968 139376976 1.0E-05 TTGTTTGTT 9 V_SP1_Q2_01_M00933 TRANSFAC + 139377553 139377562 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 139377565 139377574 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 139377629 139377638 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 139377688 139377697 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 139377787 139377796 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 139377894 139377903 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 139377927 139377936 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 139377969 139377978 7.0E-06 CCCCGCCCCT 10 V_ELF5_04_M02241 TRANSFAC + 139379839 139379847 9.0E-06 AACTTCCTT 9 V_MAFK_04_M02880 TRANSFAC + 139379556 139379570 5.0E-06 GCATAAAATGCAAGG 15 V_P300_01_M00033 TRANSFAC - 139376905 139376918 4.0E-06 TAGAGGAGTGTGTG 14 V_SP1_Q4_01_M00932 TRANSFAC - 139377551 139377563 6.0E-06 CAGGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC - 139377563 139377575 2.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 139377627 139377639 2.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 139377785 139377797 2.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 139377824 139377836 9.0E-06 AGGGGGCGGGACG 13 V_SP1_Q4_01_M00932 TRANSFAC - 139377892 139377904 2.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 139377925 139377937 1.0E-06 GGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 139377967 139377979 2.0E-06 GAGGGGCGGGGCC 13 V_PBX1_Q3_M02028 TRANSFAC + 139378090 139378098 6.0E-06 TTCAATCAA 9 V_RNF96_01_M01199 TRANSFAC - 139378337 139378346 7.0E-06 GCCCGCGGCC 10 V_BRCA_01_M01082 TRANSFAC + 139379607 139379614 1.0E-05 TTCTGTTG 8 V_AP2_Q3_M00800 TRANSFAC + 139379135 139379150 3.0E-06 GGCCGCAGGCGGTGCA 16 V_NKX21_01_M01312 TRANSFAC - 139377068 139377083 7.0E-06 TAAGACTCTTAACTTT 16 V_OCT4_01_M01125 TRANSFAC - 139376875 139376889 1.0E-05 CTTTGTGATGGAAGT 15 V_HSF1_Q6_01_M02017 TRANSFAC + 139382008 139382021 9.0E-06 CATTTTTCTGGAAT 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.