Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

DHX38 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9785 DEAH (Asp-Glu-Ala-His) box polypeptide 38 chr16 + 72122614 - 72128114 72127614 Transcription Factor Binding Sites   Download all TFBS in the DHX38 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 72127194 72127211 7.0E-06 GATATACATATTTAAAGT 18 EOMES_TBX_DBD_dimeric_20_1 SELEX + 72127937 72127956 2.0E-06 TCGCGCTTGGTGAGGTGAGA 20 EOMES_TBX_DBD_dimeric_20_1 SELEX - 72127937 72127956 7.0E-06 TCTCACCTCACCAAGCGCGA 20 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 72127147 72127159 8.0E-06 GTAAATAAAAATC 13 PAX6_PAX_DBD_monomeric_19_1 SELEX + 72127133 72127151 8.0E-06 GTGAACGCATGGGTGATTT 19 TBX5_TBX_DBD_dimeric_20_1 SELEX + 72127850 72127869 8.0E-06 AGGTGTGGATTTTGGCTCCT 20 TBX5_TBX_DBD_dimeric_20_1 SELEX - 72127850 72127869 3.0E-06 AGGAGCCAAAATCCACACCT 20 FOXL1_forkhead_full_dimeric_13_1 SELEX - 72127148 72127160 1.0E-06 TGTAAATAAAAAT 13 Pax4_MA0068.1 JASPAR - 72127128 72127157 9.0E-06 AAATAAAAATCACCCATGCGTTCACACGCA 30 IRF1_MA0050.1 JASPAR - 72126926 72126937 8.0E-06 CATAGCGAAACC 12 IRF1_MA0050.1 JASPAR - 72127291 72127302 9.0E-06 CAAAGTGAAAGG 12 RFX2_RFX_DBD_dimeric_15_1 SELEX - 72127402 72127416 0.0E+00 GGTTGCTAGGCAACA 15 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 72127149 72127159 1.0E-06 GTAAATAAAAA 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 72127146 72127159 1.0E-06 GTAAATAAAAATCA 14 RFX3_RFX_DBD_dimeric_15_1 SELEX - 72127402 72127416 0.0E+00 GGTTGCTAGGCAACA 15 SPDEF_ETS_full_putative-multimer_15_1 SELEX - 72127909 72127923 6.0E-06 TCTGTCCCGGATTCT 15 TBX4_TBX_DBD_dimeric_20_1 SELEX + 72127850 72127869 5.0E-06 AGGTGTGGATTTTGGCTCCT 20 TBX4_TBX_DBD_dimeric_20_1 SELEX - 72127850 72127869 7.0E-06 AGGAGCCAAAATCCACACCT 20 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 72127149 72127159 1.0E-06 GTAAATAAAAA 11 PRDM4_C2H2_full_monomeric_13_1 SELEX - 72127711 72127723 8.0E-06 TCTCAAGGCCTCC 13 RFX4_RFX_DBD_dimeric_15_1 SELEX - 72127402 72127416 0.0E+00 GGTTGCTAGGCAACA 15 POU1F1_POU_DBD_monomeric_17_1 SELEX + 72127194 72127210 2.0E-06 GATATACATATTTAAAG 17 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 72127289 72127303 2.0E-06 ACAAAGTGAAAGGGA 15 CPEB1_RRM_full_monomeric_8_1 SELEX - 72127149 72127156 4.0E-06 AATAAAAA 8 FOXB1_forkhead_full_monomeric_9_1 SELEX - 72127152 72127160 4.0E-06 TGTAAATAA 9 IRF3_IRF_full_trimeric_21_1 SELEX + 72127432 72127452 2.0E-06 GCGGGAAGGAAACCGAACAGA 21 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 72127149 72127161 2.0E-06 CTGTAAATAAAAA 13 TBX1_TBX_DBD_dimeric_20_1 SELEX + 72127129 72127148 4.0E-06 GCGTGTGAACGCATGGGTGA 20 AR_nuclearreceptor_full_dimeric_17_1 SELEX + 72126809 72126825 7.0E-06 AGGCACAGGGAGTTCCT 17 FOXO1_forkhead_DBD_dimeric_14_1 SELEX + 72127195 72127208 8.0E-06 ATATACATATTTAA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 72127146 72127159 1.0E-06 GTAAATAAAAATCA 14 V_FOXP1_01_M00987 TRANSFAC - 72127185 72127204 3.0E-06 ATATGTATATCGGATATTTT 20 V_STAT5A_Q6_M01890 TRANSFAC + 72127316 72127328 7.0E-06 CCACTTCTCGGAA 13 V_ELK1_04_M01165 TRANSFAC + 72127557 72127567 6.0E-06 GACCGGAAGCT 11 V_EVI1_05_M00082 TRANSFAC + 72126788 72126798 7.0E-06 AAACAAGATAG 11 V_ATF5_01_M01295 TRANSFAC + 72127961 72127971 3.0E-06 CTTCTTCCTTC 11 V_NFY_Q6_M00185 TRANSFAC + 72126876 72126886 7.0E-06 TGACCAATAAC 11 V_NFY_Q6_M00185 TRANSFAC - 72127664 72127674 2.0E-06 TGACCAATCAC 11 V_EVI1_04_M00081 TRANSFAC + 72126783 72126797 2.0E-06 AAATTAAACAAGATA 15 V_BCL6_01_M01183 TRANSFAC - 72126782 72126797 1.0E-06 TATCTTGTTTAATTTT 16 V_BCL6_01_M01183 TRANSFAC - 72126842 72126857 8.0E-06 TTTCCAGAAAGGTTTT 16 V_DEAF1_01_M01001 TRANSFAC - 72127318 72127342 8.0E-06 CCGCGCCCGGGCTCTTCCGAGAAGT 25 V_HOXA13_02_M01297 TRANSFAC - 72127149 72127157 4.0E-06 AAATAAAAA 9 V_FOXJ2_02_M00423 TRANSFAC - 72127817 72127830 8.0E-06 CCCTTAATACTTTG 14 V_IRF2_Q6_M01882 TRANSFAC - 72127289 72127304 3.0E-06 CACAAAGTGAAAGGGA 16 V_FOXO3A_Q1_M01137 TRANSFAC - 72127149 72127160 1.0E-06 TGTAAATAAAAA 12 V_P50P50_Q3_M01223 TRANSFAC - 72127951 72127963 1.0E-05 AAGGGACTCTCAC 13 V_RFX4_03_M02789 TRANSFAC + 72127404 72127418 4.0E-06 TTGCCTAGCAACCCT 15 V_GABPA_04_M02858 TRANSFAC + 72127602 72127617 6.0E-06 CCTTTTTCCCCTCCTT 16 V_NFY_Q6_01_M00775 TRANSFAC - 72127665 72127677 7.0E-06 TTGTGACCAATCA 13 V_TCFAP2E_04_M02926 TRANSFAC + 72126849 72126862 5.0E-06 TTCTGGAAAGAAAA 14 V_NFY_C_M00209 TRANSFAC + 72127663 72127676 2.0E-06 AGTGATTGGTCACA 14 V_ELF4_04_M02850 TRANSFAC - 72127146 72127162 9.0E-06 GCTGTAAATAAAAATCA 17 V_HELIOSA_02_M01004 TRANSFAC - 72127178 72127188 4.0E-06 TTTTGGAAAAT 11 V_ZFP105_03_M02827 TRANSFAC - 72127146 72127160 1.0E-06 TGTAAATAAAAATCA 15 V_RFX1_01_M00280 TRANSFAC + 72127401 72127417 4.0E-06 CTGTTGCCTAGCAACCC 17 V_RFX1_01_M00280 TRANSFAC - 72127401 72127417 2.0E-06 GGGTTGCTAGGCAACAG 17 V_HES1_Q2_M01009 TRANSFAC + 72127413 72127427 5.0E-06 AACCCTCGTGGCCCC 15 V_AMEF2_Q6_M00403 TRANSFAC - 72127142 72127159 1.0E-05 GTAAATAAAAATCACCCA 18 V_IRF3_Q3_M01279 TRANSFAC + 72127289 72127301 2.0E-06 TCCCTTTCACTTT 13 V_ZF5_B_M00333 TRANSFAC + 72127807 72127819 7.0E-06 AGGGGGCGCGCAA 13 V_HNF1_Q6_01_M01011 TRANSFAC + 72126775 72126795 7.0E-06 ATTGGCAAAAATTAAACAAGA 21 V_RFXDC2_03_M02790 TRANSFAC + 72127404 72127418 4.0E-06 TTGCCTAGCAACCCT 15 V_ISRE_01_M00258 TRANSFAC - 72127465 72127479 1.0E-06 GAGTTTCTTTTCTGC 15 V_YY1_Q6_02_M01035 TRANSFAC + 72127172 72127182 3.0E-06 ATCTCCATTTT 11 V_OCT1_04_M00138 TRANSFAC + 72127189 72127211 7.0E-06 TATCCGATATACATATTTAAAGT 23 V_SP1_01_M00008 TRANSFAC + 72126919 72126928 7.0E-06 GAGGCGGGGT 10 V_EVI1_06_M00011 TRANSFAC + 72126790 72126798 4.0E-06 ACAAGATAG 9 V_YY1_03_M02044 TRANSFAC - 72127833 72127844 6.0E-06 GCGGCCATTATT 12 V_CAAT_01_M00254 TRANSFAC - 72127665 72127676 5.0E-06 TGTGACCAATCA 12 V_EOMES_04_M02851 TRANSFAC - 72127567 72127582 5.0E-06 GCGGAGGTGACGCCTA 16 V_CAAT_C_M00200 TRANSFAC + 72126878 72126902 0.0E+00 ACCAATAACTCCACTGCTTTCCTCT 25 V_FOXL1_02_M02857 TRANSFAC + 72126782 72126797 3.0E-06 AAAATTAAACAAGATA 16 V_OCT1_Q6_M00195 TRANSFAC - 72127145 72127159 7.0E-06 GTAAATAAAAATCAC 15 V_AIRE_01_M00999 TRANSFAC - 72127177 72127202 0.0E+00 ATGTATATCGGATATTTTGGAAAATG 26 V_NRF2_01_M00108 TRANSFAC + 72127516 72127525 6.0E-06 AACGGAAGAG 10 V_IRF1_Q6_01_M01881 TRANSFAC + 72127290 72127303 4.0E-06 CCCTTTCACTTTGT 14 V_SIX6_08_M02897 TRANSFAC + 72127190 72127206 3.0E-06 ATCCGATATACATATTT 17 V_YY1_01_M00059 TRANSFAC + 72127171 72127187 1.0E-06 CATCTCCATTTTCCAAA 17 V_GATA1_02_M00126 TRANSFAC + 72126789 72126802 1.0E-05 AACAAGATAGTGGT 14 V_P300_01_M00033 TRANSFAC - 72127282 72127295 9.0E-06 AAAGGGAGTGAGGC 14 V_MIF1_01_M00279 TRANSFAC - 72127400 72127417 0.0E+00 GGGTTGCTAGGCAACAGC 18 V_OCT4_01_M01125 TRANSFAC - 72127195 72127209 1.0E-05 TTTAAATATGTATAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.