Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PHF16 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9767 PHD finger protein 16 chrX + 46766735 - 46772367 46771867 Transcription Factor Binding Sites   Download all TFBS in the PHF16 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX - 46771688 46771699 5.0E-06 GCCCCGCCCACT 12 PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 46772013 46772021 5.0E-06 CTTAATCCC 9 SPIC_ETS_full_monomeric_14_1 SELEX - 46773614 46773627 7.0E-06 CTAAAGGGAAAGTA 14 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 46773405 46773413 7.0E-06 AGAAGTCAA 9 PITX1_homeodomain_full_monomeric_8_1 SELEX - 46772013 46772020 1.0E-05 TTAATCCC 8 SP1_MA0079.2 JASPAR - 46771995 46772004 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 46771686 46771702 5.0E-06 GACGCCCCGCCCACTCG 17 SP1_C2H2_DBD_monomeric_11_1 SELEX - 46771689 46771699 1.0E-05 GCCCCGCCCAC 11 Gata1_MA0035.2 JASPAR - 46767405 46767415 1.0E-06 ACTGATAAGAA 11 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 46773574 46773589 2.0E-06 AACCCACAATCCACTT 16 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 46772013 46772020 1.0E-05 TTAATCCC 8 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX + 46773421 46773431 7.0E-06 TTGAAGGTGAT 11 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 46773613 46773627 3.0E-06 CTAAAGGGAAAGTAT 15 GSC2_homeodomain_DBD_monomeric_10_1 SELEX - 46772012 46772021 2.0E-06 CTTAATCCCC 10 V_MINI20_B_M00324 TRANSFAC - 46772108 46772128 2.0E-06 GCCCGGCTCCACGCCGCGGCC 21 V_GATA1_Q6_M02004 TRANSFAC - 46767404 46767418 3.0E-06 AGAACTGATAAGAAT 15 V_GATA2_02_M00348 TRANSFAC - 46767406 46767415 5.0E-06 ACTGATAAGA 10 V_ZEC_01_M01081 TRANSFAC - 46773572 46773584 6.0E-06 GATTGTGGGTTGC 13 V_SRY_02_M00160 TRANSFAC + 46771866 46771877 1.0E-05 GAATACAATAGT 12 V_CEBP_01_M00159 TRANSFAC + 46773556 46773568 7.0E-06 TCTTTGCTTAGTT 13 V_SP1_03_M02281 TRANSFAC - 46771995 46772004 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC + 46771996 46772006 8.0E-06 GGGGCGGGGGC 11 V_E2A_Q2_M00804 TRANSFAC - 46772018 46772031 9.0E-06 GCACCTGCCCCTTA 14 V_GM497_04_M02864 TRANSFAC - 46773329 46773344 4.0E-06 CACGGCACACACACAC 16 V_GC_01_M00255 TRANSFAC + 46771688 46771701 3.0E-06 AGTGGGCGGGGCGT 14 V_GC_01_M00255 TRANSFAC + 46771834 46771847 7.0E-06 AAGAGGCGGAGCGT 14 V_STAF_01_M00262 TRANSFAC + 46773572 46773593 5.0E-06 GCAACCCACAATCCACTTTCCC 22 V_SP4_03_M02810 TRANSFAC - 46772059 46772075 5.0E-06 GTAACCGCCCCCCTAAC 17 V_KROX_Q6_M00982 TRANSFAC - 46771684 46771697 7.0E-06 CCCGCCCACTCGCC 14 V_KROX_Q6_M00982 TRANSFAC - 46771996 46772009 0.0E+00 CTCGCCCCCGCCCC 14 V_ZBP89_Q4_M01816 TRANSFAC - 46771815 46771824 2.0E-06 TCCTCCCCCA 10 V_SP1_Q6_M00196 TRANSFAC + 46771688 46771700 3.0E-06 AGTGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 46771994 46772006 4.0E-06 GGGGGGCGGGGGC 13 V_IRF3_Q3_M01279 TRANSFAC + 46773613 46773625 3.0E-06 ATACTTTCCCTTT 13 V_MAZ_Q6_01_M02023 TRANSFAC + 46771801 46771814 5.0E-06 GTGGGAGGAGAGGT 14 V_MAZ_Q6_01_M02023 TRANSFAC + 46772032 46772045 1.0E-05 GAGGGAGGGAAGAG 14 V_HOX13_01_M00023 TRANSFAC - 46773514 46773543 6.0E-06 AGTTTTTACCTAAATTATTTTTCATTACTT 30 V_PITX3_01_M01343 TRANSFAC + 46772010 46772025 8.0E-06 GAGGGGATTAAGGGGC 16 V_SOX12_04_M02900 TRANSFAC - 46773321 46773336 5.0E-06 ACACACACAAACAACT 16 V_GATA1_09_M02254 TRANSFAC - 46767405 46767415 1.0E-06 ACTGATAAGAA 11 V_SP4_Q5_M01273 TRANSFAC - 46771689 46771699 9.0E-06 GCCCCGCCCAC 11 V_SP4_Q5_M01273 TRANSFAC - 46771995 46772005 5.0E-06 CCCCCGCCCCC 11 V_HFH8_01_M00294 TRANSFAC + 46773321 46773333 7.0E-06 AGTTGTTTGTGTG 13 V_MINI19_B_M00323 TRANSFAC - 46772108 46772128 1.0E-06 GCCCGGCTCCACGCCGCGGCC 21 V_GATA1_05_M00346 TRANSFAC - 46767406 46767415 1.0E-05 ACTGATAAGA 10 V_TAL1_01_M01591 TRANSFAC - 46772040 46772052 1.0E-06 CTTTCTTCTCTTC 13 V_GATA1_04_M00128 TRANSFAC - 46767404 46767416 1.0E-06 AACTGATAAGAAT 13 V_E2F3_03_M02743 TRANSFAC + 46772636 46772650 6.0E-06 GCGAGGGCGCGCCCT 15 V_STAT6_02_M00500 TRANSFAC - 46773293 46773300 1.0E-05 GATTTCCT 8 V_PIT1_Q6_M00802 TRANSFAC - 46773393 46773410 8.0E-06 ACTTCTTACACAATCAGA 18 V_SP1_Q2_01_M00933 TRANSFAC - 46771995 46772004 4.0E-06 CCCCGCCCCC 10 V_GATA5_03_M02756 TRANSFAC - 46767402 46767418 0.0E+00 AGAACTGATAAGAATGG 17 V_UF1H3BETA_Q6_M01068 TRANSFAC + 46771597 46771610 4.0E-06 GGCGGGGCTGGGGC 14 V_GATA6_04_M02757 TRANSFAC - 46767402 46767418 2.0E-06 AGAACTGATAAGAATGG 17 V_SP1_Q4_01_M00932 TRANSFAC + 46771688 46771700 1.0E-06 AGTGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC + 46771994 46772006 8.0E-06 GGGGGGCGGGGGC 13 V_NF1_Q6_M00193 TRANSFAC + 46773247 46773264 4.0E-06 ATTTGGCAAGAAACTTGT 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.