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HDAC9 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9734 histone deacetylase 9 chr7 + 18121571 - 18127071 18126571 Transcription Factor Binding Sites   Download all TFBS in the HDAC9 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Uncx_homeodomain_DBD_monomeric_8_1 SELEX - 18127384 18127391 9.0E-06 CTAATTAA 8 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX - 18127384 18127391 9.0E-06 CTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX - 18127384 18127391 5.0E-06 CTAATTAA 8 ALX3_homeodomain_full_monomeric_10_1 SELEX - 18127383 18127392 1.0E-06 TCTAATTAAC 10 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX - 18128667 18128677 5.0E-06 ATCAAAGGTCA 11 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 18126439 18126450 0.0E+00 GCTAAAAATAGC 12 Shox2_homeodomain_DBD_monomeric_8_1 SELEX - 18127384 18127391 5.0E-06 CTAATTAA 8 ESX1_homeodomain_full_monomeric_10_1 SELEX - 18127383 18127392 2.0E-06 TCTAATTAAC 10 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 18128667 18128683 2.0E-06 CAGTTTATCAAAGGTCA 17 Alx1_homeodomain_DBD_monomeric_10_1 SELEX - 18127383 18127392 1.0E-06 TCTAATTAAC 10 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 18128667 18128684 5.0E-06 GCAGTTTATCAAAGGTCA 18 NKX6-2_homeodomain_full_monomeric_8_1 SELEX - 18127384 18127391 5.0E-06 CTAATTAA 8 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 18126439 18126450 0.0E+00 GCTAAAAATAGC 12 PRRX2_homeodomain_full_monomeric_8_1 SELEX - 18127384 18127391 5.0E-06 CTAATTAA 8 LMX1B_homeodomain_full_monomeric_8_1 SELEX - 18127384 18127391 9.0E-06 CTAATTAA 8 MEF2B_MADS_full_dimeric_12_1 SELEX - 18126439 18126450 0.0E+00 GCTAAAAATAGC 12 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX - 18128667 18128683 3.0E-06 CAGTTTATCAAAGGTCA 17 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX - 18128667 18128683 5.0E-06 CAGTTTATCAAAGGTCA 17 MEF2A_MA0052.1 JASPAR + 18126440 18126449 1.0E-06 CTATTTTTAG 10 Hoxa2_homeodomain_DBD_monomeric_10_1 SELEX - 18127383 18127392 5.0E-06 TCTAATTAAC 10 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX - 18127383 18127392 7.0E-06 TCTAATTAAC 10 SHOX_homeodomain_DBD_monomeric_8_1 SELEX - 18127384 18127391 9.0E-06 CTAATTAA 8 PRRX1_homeodomain_full_monomeric_8_1 SELEX - 18127384 18127391 5.0E-06 CTAATTAA 8 DLX6_homeodomain_DBD_monomeric_8_1 SELEX - 18127384 18127391 5.0E-06 CTAATTAA 8 NOTO_homeodomain_DBD_monomeric_10_1 SELEX - 18127383 18127392 4.0E-06 TCTAATTAAC 10 MIXL1_homeodomain_full_monomeric_10_1 SELEX + 18127383 18127392 8.0E-06 GTTAATTAGA 10 MIXL1_homeodomain_full_monomeric_10_1 SELEX - 18127383 18127392 3.0E-06 TCTAATTAAC 10 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX - 18127384 18127391 5.0E-06 CTAATTAA 8 Lhx3_MA0135.1 JASPAR - 18127378 18127390 9.0E-06 TAATTAACCAGTT 13 DLX3_homeodomain_DBD_monomeric_8_1 SELEX - 18127384 18127391 9.0E-06 CTAATTAA 8 HESX1_homeodomain_DBD_monomeric_10_1 SELEX + 18127383 18127392 6.0E-06 GTTAATTAGA 10 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 18127383 18127392 8.0E-06 TCTAATTAAC 10 LHX2_homeodomain_DBD_monomeric_10_1 SELEX - 18127383 18127392 6.0E-06 TCTAATTAAC 10 Foxd3_MA0041.1 JASPAR + 18127696 18127707 2.0E-06 AATTGTTTTTTC 12 LHX9_homeodomain_DBD_monomeric_8_1 SELEX - 18127384 18127391 5.0E-06 CTAATTAA 8 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX - 18127383 18127392 9.0E-06 TCTAATTAAC 10 MEOX1_homeodomain_full_monomeric_10_1 SELEX - 18127383 18127392 8.0E-06 TCTAATTAAC 10 LBX2_homeodomain_DBD_monomeric_10_1 SELEX - 18127383 18127392 6.0E-06 TCTAATTAAC 10 GSX1_homeodomain_DBD_monomeric_10_1 SELEX - 18127383 18127392 4.0E-06 TCTAATTAAC 10 GBX2_homeodomain_DBD_dimeric_14_1 SELEX - 18127377 18127390 1.0E-05 TAATTAACCAGTTT 14 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 18126772 18126786 6.0E-06 GAAGTTAAGAGGTCG 15 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX - 18127384 18127391 5.0E-06 CTAATTAA 8 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX - 18127384 18127391 9.0E-06 CTAATTAA 8 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 18127692 18127705 9.0E-06 AAAAACAATTGACA 14 V_DMRT4_01_M01149 TRANSFAC + 18125803 18125815 0.0E+00 AATGTAGCATTTT 13 V_MEIS1_02_M01419 TRANSFAC + 18127685 18127700 1.0E-05 GAAGATCTGTCAATTG 16 V_PREP1_01_M01459 TRANSFAC + 18127685 18127700 6.0E-06 GAAGATCTGTCAATTG 16 V_SMAD3_Q6_01_M01888 TRANSFAC - 18128659 18128671 9.0E-06 GGTCAGACAGGAT 13 V_DMRT3_01_M01148 TRANSFAC - 18125801 18125815 9.0E-06 AAAATGCTACATTTG 15 V_MYB_03_M02883 TRANSFAC + 18128674 18128689 6.0E-06 TGATAAACTGCCAGCC 16 V_SOX30_03_M02804 TRANSFAC - 18127691 18127706 3.0E-06 AAAAAACAATTGACAG 16 V_FOXD3_01_M00130 TRANSFAC + 18127696 18127707 1.0E-06 AATTGTTTTTTC 12 V_MEF2_02_M00231 TRANSFAC - 18126435 18126456 0.0E+00 GAATTTGCTAAAAATAGCACTT 22 V_NR2F2_03_M02783 TRANSFAC - 18128663 18128678 4.0E-06 TATCAAAGGTCAGACA 16 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 18128673 18128686 2.0E-06 TGGCAGTTTATCAA 14 V_SRY_02_M00160 TRANSFAC - 18127694 18127705 3.0E-06 AAAAACAATTGA 12 V_CART1_02_M01362 TRANSFAC - 18127379 18127395 5.0E-06 GCATCTAATTAACCAGT 17 V_YY1_Q6_M00793 TRANSFAC - 18126746 18126754 7.0E-06 GCCATCTTT 9 V_GABPA_04_M02858 TRANSFAC + 18126162 18126177 6.0E-06 CCCTTTTCCGCTCCAC 16 V_MYB_05_M02779 TRANSFAC + 18127480 18127496 7.0E-06 TTTGAAGCCGTTATCCC 17 V_HFH4_01_M00742 TRANSFAC + 18127465 18127477 3.0E-06 CTGCGTTTGTTTG 13 V_GKLF_02_M01588 TRANSFAC + 18126356 18126367 5.0E-06 GCCCCGCCCAGC 12 V_TR4_Q2_M01725 TRANSFAC + 18128665 18128675 2.0E-06 TCTGACCTTTG 11 V_AFP1_Q6_M00616 TRANSFAC - 18126437 18126447 8.0E-06 AAAAATAGCAC 11 V_K2B_01_M01348 TRANSFAC - 18127379 18127395 4.0E-06 GCATCTAATTAACCAGT 17 V_ALX4_02_M01417 TRANSFAC + 18127380 18127396 9.0E-06 CTGGTTAATTAGATGCC 17 V_PAX6_02_M01391 TRANSFAC + 18127381 18127396 6.0E-06 TGGTTAATTAGATGCC 16 V_LDSPOLYA_B_M00317 TRANSFAC + 18127695 18127710 7.0E-06 CAATTGTTTTTTCTTC 16 V_VSX1_01_M01335 TRANSFAC - 18127379 18127395 6.0E-06 GCATCTAATTAACCAGT 17 V_MEF2A_Q6_M02024 TRANSFAC + 18126441 18126450 1.0E-06 TATTTTTAGC 10 V_TGIF2_01_M01407 TRANSFAC + 18127685 18127700 1.0E-05 GAAGATCTGTCAATTG 16 V_HMBOX1_01_M01456 TRANSFAC + 18127375 18127391 0.0E+00 GTAAACTGGTTAATTAG 17 V_SOX7_03_M02807 TRANSFAC - 18127688 18127709 1.0E-06 AAGAAAAAACAATTGACAGATC 22 V_ZFP105_03_M02827 TRANSFAC - 18127695 18127709 4.0E-06 AAGAAAAAACAATTG 15 V_RSRFC4_Q2_M00407 TRANSFAC - 18126436 18126452 0.0E+00 TTGCTAAAAATAGCACT 17 V_MAZ_Q6_01_M02023 TRANSFAC - 18126419 18126432 4.0E-06 TGGGGAGGGAAGTA 14 V_PAX4_05_M01385 TRANSFAC - 18127379 18127395 4.0E-06 GCATCTAATTAACCAGT 17 V_MEF2_03_M00232 TRANSFAC - 18126435 18126456 0.0E+00 GAATTTGCTAAAAATAGCACTT 22 V_SOX18_03_M02801 TRANSFAC + 18127693 18127708 2.0E-06 GTCAATTGTTTTTTCT 16 V_NKX52_01_M01315 TRANSFAC - 18127689 18127705 8.0E-06 AAAAACAATTGACAGAT 17 V_SFPI1_04_M02896 TRANSFAC + 18127676 18127689 3.0E-06 CAATTTCAGGAAGA 14 V_REX1_03_M01744 TRANSFAC + 18126747 18126758 5.0E-06 AAGATGGCTGTT 12 V_MEF2_04_M00233 TRANSFAC - 18126435 18126456 0.0E+00 GAATTTGCTAAAAATAGCACTT 22 V_MEF2_Q6_01_M00941 TRANSFAC + 18126438 18126449 0.0E+00 TGCTATTTTTAG 12 V_NR1B1_Q6_M02110 TRANSFAC - 18128665 18128674 2.0E-06 AAAGGTCAGA 10 V_SOX9_B1_M00410 TRANSFAC - 18127693 18127706 7.0E-06 AAAAAACAATTGAC 14 V_HOXB4_01_M01424 TRANSFAC + 18127380 18127396 7.0E-06 CTGGTTAATTAGATGCC 17 V_SHOX2_01_M01415 TRANSFAC + 18127380 18127396 3.0E-06 CTGGTTAATTAGATGCC 17 V_SOX15_03_M02799 TRANSFAC - 18127691 18127707 5.0E-06 GAAAAAACAATTGACAG 17 V_CEBPA_01_M00116 TRANSFAC - 18126442 18126455 8.0E-06 AATTTGCTAAAAAT 14 V_MEIS1_01_M00419 TRANSFAC - 18127688 18127699 7.0E-06 AATTGACAGATC 12 V_DMRT7_01_M01151 TRANSFAC + 18125804 18125817 5.0E-06 ATGTAGCATTTTTT 14 V_ASCL2_04_M02841 TRANSFAC + 18126343 18126358 4.0E-06 CTATCCCCACCCAGCC 16 V_RSRFC4_01_M00026 TRANSFAC + 18126437 18126452 0.0E+00 GTGCTATTTTTAGCAA 16 V_RSRFC4_01_M00026 TRANSFAC - 18126437 18126452 6.0E-06 TTGCTAAAAATAGCAC 16 V_ALX4_03_M02944 TRANSFAC + 18127380 18127396 9.0E-06 CTGGTTAATTAGATGCC 17 V_R_01_M00273 TRANSFAC + 18127498 18127518 4.0E-06 TTGTCCGCAATGAGAGGTGCT 21 V_RARA_03_M02787 TRANSFAC - 18128663 18128678 3.0E-06 TATCAAAGGTCAGACA 16 V_SOX8_03_M02808 TRANSFAC + 18127691 18127707 3.0E-06 CTGTCAATTGTTTTTTC 17 V_ESX1_01_M01474 TRANSFAC + 18127379 18127395 8.0E-06 ACTGGTTAATTAGATGC 17 V_NUR77_Q5_M01217 TRANSFAC + 18128666 18128675 7.0E-06 CTGACCTTTG 10 V_SRF_06_M02916 TRANSFAC - 18127695 18127711 6.0E-06 GGAAGAAAAAACAATTG 17 V_POU6F1_03_M01479 TRANSFAC + 18127380 18127396 8.0E-06 CTGGTTAATTAGATGCC 17 V_FOXO1_01_M00473 TRANSFAC - 18127697 18127706 3.0E-06 AAAAAACAAT 10 V_BSX_01_M01442 TRANSFAC - 18127689 18127704 7.0E-06 AAAACAATTGACAGAT 16 V_SRY_05_M02917 TRANSFAC - 18127692 18127708 4.0E-06 AGAAAAAACAATTGACA 17 V_MEF2_01_M00006 TRANSFAC - 18125686 18125701 9.0E-06 CTCTGAAACCAACCCT 16 V_MEF2_01_M00006 TRANSFAC - 18126436 18126451 1.0E-06 TGCTAAAAATAGCACT 16 V_MEF2A_05_M01301 TRANSFAC + 18126438 18126449 0.0E+00 TGCTATTTTTAG 12 V_HMEF2_Q6_M00406 TRANSFAC - 18126436 18126451 8.0E-06 TGCTAAAAATAGCACT 16 V_LHX5_01_M01353 TRANSFAC + 18127380 18127396 5.0E-06 CTGGTTAATTAGATGCC 17 V_MAFK_04_M02880 TRANSFAC - 18125805 18125819 3.0E-06 GAAAAAAATGCTACA 15 V_BARX1_01_M01340 TRANSFAC - 18127689 18127704 8.0E-06 AAAACAATTGACAGAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.