Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

WSCD2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9671 WSC domain containing 2 chr12 + 108518510 - 108524010 108523510 Transcription Factor Binding Sites   Download all TFBS in the WSCD2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 108525778 108525786 2.0E-06 AAAAGTCAA 9 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 108527414 108527428 5.0E-06 CTGCTGAATCAACAC 15 IRF1_MA0050.1 JASPAR - 108523338 108523349 7.0E-06 GGAAGTGAAAGC 12 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 108527413 108527429 1.0E-06 AGTGTTGATTCAGCAGT 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 108527413 108527429 2.0E-06 ACTGCTGAATCAACACT 17 MAFK_bZIP_full_dimeric_15_1 SELEX + 108527414 108527428 6.0E-06 GTGTTGATTCAGCAG 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 108523336 108523350 9.0E-06 AGGAAGTGAAAGCCG 15 Myf_MA0055.1 JASPAR - 108527423 108527434 7.0E-06 CACCAACTGCTG 12 TBX1_TBX_DBD_dimeric_20_1 SELEX + 108523000 108523019 9.0E-06 AGGTGGCATGCAAGGAGTTA 20 V_NFAT_Q4_01_M00935 TRANSFAC - 108527470 108527479 7.0E-06 TTGGAAAAAT 10 V_OSR1_03_M02784 TRANSFAC - 108525756 108525771 8.0E-06 AAGAACAGTAGCCTTG 16 V_NRSF_Q4_M01028 TRANSFAC + 108523415 108523433 1.0E-06 CCGCTGTCGCCGCTGCTGC 19 V_IRF_Q6_01_M00972 TRANSFAC - 108523339 108523349 4.0E-06 GGAAGTGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC - 108523336 108523351 7.0E-06 GAGGAAGTGAAAGCCG 16 V_PU1_Q4_M01172 TRANSFAC + 108523337 108523355 3.0E-06 GGCTTTCACTTCCTCTCGC 19 V_MYBL1_04_M02884 TRANSFAC - 108527421 108527435 9.0E-06 GCACCAACTGCTGAA 15 V_ETS_Q4_M00771 TRANSFAC + 108523340 108523351 8.0E-06 TTTCACTTCCTC 12 V_HELIOSA_02_M01004 TRANSFAC - 108527471 108527481 7.0E-06 ACTTGGAAAAA 11 V_MYF_01_M01302 TRANSFAC - 108527423 108527434 7.0E-06 CACCAACTGCTG 12 V_NFAT_Q6_M00302 TRANSFAC - 108527470 108527481 1.0E-05 ACTTGGAAAAAT 12 V_HIC1_03_M01073 TRANSFAC + 108523256 108523273 7.0E-06 GGCGGGTGCCCGCGCGGG 18 V_IRF_Q6_M00772 TRANSFAC + 108523335 108523349 6.0E-06 CCGGCTTTCACTTCC 15 V_ASCL2_03_M02737 TRANSFAC - 108523579 108523595 3.0E-06 CTTCCCAGCTGCTGCAG 17 V_HIC1_02_M01072 TRANSFAC + 108523256 108523270 5.0E-06 GGCGGGTGCCCGCGC 15 V_OSR2_03_M02785 TRANSFAC - 108525756 108525771 1.0E-06 AAGAACAGTAGCCTTG 16 V_NRSF_01_M00256 TRANSFAC - 108523414 108523434 8.0E-06 TGCAGCAGCGGCGACAGCGGT 21 V_STAT6_02_M00500 TRANSFAC - 108523547 108523554 1.0E-05 GATTTCCT 8 V_PAX4_04_M00380 TRANSFAC - 108527447 108527476 1.0E-06 GAAAAATGAGCACGCATCATCCAACACTCT 30

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.