Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TTC37 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9652 tetratricopeptide repeat domain 37 chr5 - 94890209 - 94895709 94890709 Transcription Factor Binding Sites   Download all TFBS in the TTC37 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 94889564 94889576 8.0E-06 AAAAACGTAAACA 13 SOX21_HMG_DBD_dimeric_15_1 SELEX + 94890143 94890157 4.0E-06 AACAATGATATTCTG 15 Foxa2_MA0047.2 JASPAR - 94889879 94889890 9.0E-06 TGTTTATTTAAT 12 SP3_C2H2_DBD_monomeric_11_1 SELEX - 94893724 94893734 5.0E-06 GCCACACCCAC 11 SOX10_HMG_full_dimeric_14_1 SELEX + 94889683 94889696 6.0E-06 TCAATTTTCAGTCG 14 POU2F1_POU_DBD_dimeric_14_1 SELEX + 94891284 94891297 8.0E-06 CATACCTATGCAAA 14 ZBTB7A_C2H2_DBD_monomeric_12_1 SELEX - 94891001 94891012 0.0E+00 TGCGACCACCGA 12 SRY_HMG_DBD_dimeric_15_1 SELEX - 94890143 94890157 0.0E+00 CAGAATATCATTGTT 15 SOX2_HMG_full_dimeric_17_1 SELEX - 94890142 94890158 1.0E-06 TCAGAATATCATTGTTT 17 FOXF2_MA0030.1 JASPAR - 94889562 94889575 6.0E-06 AAAACGTAAACAGT 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 94889881 94889892 0.0E+00 TAAATAAACAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 94889879 94889891 0.0E+00 ATTAAATAAACAA 13 ZBTB7B_C2H2_full_monomeric_12_1 SELEX - 94891000 94891011 1.0E-06 GCGACCACCGAC 12 ZNF435_C2H2_full_dimeric_18_1 SELEX - 94889826 94889843 5.0E-06 AGCATTTACTGAGCATCT 18 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 94889881 94889891 2.0E-06 TAAATAAACAA 11 Sox17_HMG_DBD_dimeric_15_1 SELEX - 94890143 94890157 2.0E-06 CAGAATATCATTGTT 15 Klf4_MA0039.2 JASPAR + 94893725 94893734 2.0E-06 TGGGTGTGGC 10 TCF7L1_HMG_full_monomeric_12_1 SELEX - 94890220 94890231 3.0E-06 AGAGAGCAAAGG 12 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 94889880 94889890 1.0E-06 TTAAATAAACA 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 94889877 94889890 6.0E-06 GTATTAAATAAACA 14 FOXI1_MA0042.1 JASPAR - 94889882 94889893 2.0E-06 ATTTGTTTATTT 12 SOX18_HMG_full_dimeric_15_1 SELEX - 94890143 94890157 2.0E-06 CAGAATATCATTGTT 15 SOX9_HMG_full_dimeric_16_3 SELEX + 94889682 94889697 5.0E-06 TTCAATTTTCAGTCGT 16 SOX15_HMG_full_dimeric_15_1 SELEX - 94890143 94890157 0.0E+00 CAGAATATCATTGTT 15 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 94890220 94890231 7.0E-06 AGAGAGCAAAGG 12 SP1_C2H2_DBD_monomeric_11_1 SELEX - 94893724 94893734 7.0E-06 GCCACACCCAC 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 94889880 94889890 0.0E+00 TTAAATAAACA 11 SOX7_HMG_full_dimeric_17_1 SELEX + 94890142 94890158 2.0E-06 AAACAATGATATTCTGA 17 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 94889641 94889661 4.0E-06 TAACTGCAGACAGAGCATTTA 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 94889641 94889661 1.0E-05 TAAATGCTCTGTCTGCAGTTA 21 SOX14_HMG_DBD_dimeric_12_1 SELEX - 94890145 94890156 2.0E-06 AGAATATCATTG 12 MZF1_5-13_MA0057.1 JASPAR - 94890196 94890205 4.0E-06 GGAGGGGGAA 10 Foxd3_MA0041.1 JASPAR - 94889882 94889893 0.0E+00 ATTTGTTTATTT 12 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 94893721 94893735 6.0E-06 GGCCACACCCACCTG 15 MLXIPL_bHLH_full_dimeric_10_1 SELEX - 94890711 94890720 9.0E-06 GTCACGTGAA 10 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX - 94891248 94891256 9.0E-06 CACATAAAA 9 ZBTB7C_C2H2_full_monomeric_12_1 SELEX - 94891000 94891011 0.0E+00 GCGACCACCGAC 12 MAFG_bZIP_full_dimeric_21_1 SELEX + 94889641 94889661 6.0E-06 TAACTGCAGACAGAGCATTTA 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 94889641 94889661 6.0E-06 TAAATGCTCTGTCTGCAGTTA 21 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 94890271 94890286 4.0E-06 CTAGTAAGAAGTTTCA 16 MLX_bHLH_full_dimeric_10_1 SELEX + 94890711 94890720 9.0E-06 TTCACGTGAC 10 POU3F3_POU_DBD_dimeric_12_1 SELEX + 94889880 94889891 5.0E-06 TTAAATAAACAA 12 Sox3_HMG_DBD_dimeric_17_1 SELEX + 94890142 94890158 0.0E+00 AAACAATGATATTCTGA 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 94890142 94890158 3.0E-06 TCAGAATATCATTGTTT 17 NRF1_NRF_full_dimeric_12_1 SELEX + 94890798 94890809 8.0E-06 TGCGCATGTGCG 12 NRF1_NRF_full_dimeric_12_1 SELEX - 94890798 94890809 5.0E-06 CGCACATGCGCA 12 Sox1_HMG_DBD_dimeric_15_1 SELEX - 94890143 94890157 2.0E-06 CAGAATATCATTGTT 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 94889878 94889890 1.0E-06 TATTAAATAAACA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 94889882 94889894 1.0E-06 AAATAAACAAATC 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 94889564 94889576 1.0E-06 AAAAACGTAAACA 13 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 94890711 94890720 8.0E-06 TTCACGTGAC 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 94890711 94890720 6.0E-06 GTCACGTGAA 10 HNF1A_MA0046.1 JASPAR + 94893435 94893448 8.0E-06 GGATAATAATTGTA 14 SOX9_HMG_full_dimeric_17_1 SELEX + 94890142 94890158 8.0E-06 AAACAATGATATTCTGA 17 V_OBOX6_01_M01445 TRANSFAC + 94889777 94889791 6.0E-06 AAGTGAGGATTATAG 15 V_HNF3B_01_M00131 TRANSFAC - 94889788 94889802 7.0E-06 TGGAATATTTTCTAT 15 V_DBX1_01_M01483 TRANSFAC + 94889878 94889894 7.0E-06 TATTAAATAAACAAATC 17 V_FREAC7_01_M00293 TRANSFAC + 94889879 94889894 0.0E+00 ATTAAATAAACAAATC 16 V_AML_Q6_M00769 TRANSFAC - 94891276 94891290 3.0E-06 AGGTATGTGGTGTAC 15 V_XFD1_01_M00267 TRANSFAC + 94889881 94889894 1.0E-06 TAAATAAACAAATC 14 V_FOXA2_04_M02749 TRANSFAC + 94889879 94889895 1.0E-06 ATTAAATAAACAAATCT 17 V_SOX30_03_M02804 TRANSFAC + 94890139 94890154 1.0E-06 GCAAAACAATGATATT 16 V_DLX3_01_M01400 TRANSFAC - 94889902 94889918 9.0E-06 CTAAGATAATTGTAGTA 17 V_FOXD3_01_M00130 TRANSFAC - 94889882 94889893 0.0E+00 ATTTGTTTATTT 12 V_BCL6_01_M01183 TRANSFAC - 94889792 94889807 0.0E+00 TTATATGGAATATTTT 16 V_BCL6_01_M01183 TRANSFAC - 94891237 94891252 4.0E-06 TAAAATGTATTTCTTT 16 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 94890756 94890768 7.0E-06 AAGACCTTTTAAT 13 V_HNF3_Q6_01_M01012 TRANSFAC + 94889559 94889576 8.0E-06 AACACTGTTTACGTTTTT 18 V_HNF3_Q6_01_M01012 TRANSFAC - 94889878 94889895 2.0E-06 AGATTTGTTTATTTAATA 18 V_FOXJ1_03_M02750 TRANSFAC + 94889881 94889896 0.0E+00 TAAATAAACAAATCTG 16 V_HFH4_01_M00742 TRANSFAC - 94889881 94889893 0.0E+00 ATTTGTTTATTTA 13 V_GKLF_02_M01588 TRANSFAC - 94893723 94893734 1.0E-06 GCCACACCCACC 12 V_DLX2_01_M01468 TRANSFAC + 94889903 94889918 1.0E-06 ACTACAATTATCTTAG 16 V_PITX2_Q6_M02114 TRANSFAC - 94889530 94889539 1.0E-06 TGTAATCCCA 10 V_NERF_Q2_M00531 TRANSFAC + 94890717 94890734 7.0E-06 TGACTGGAAGTGGCTGGG 18 V_SOX21_03_M02803 TRANSFAC + 94893433 94893448 5.0E-06 CTGGATAATAATTGTA 16 V_TCFAP2E_04_M02926 TRANSFAC + 94889916 94889929 2.0E-06 TAGGCAAAAAAAAA 14 V_NRSE_B_M00325 TRANSFAC + 94889842 94889862 7.0E-06 CTTAGTATAACGCTCAGCACC 21 V_ELF4_04_M02850 TRANSFAC + 94889918 94889934 1.0E-05 GGCAAAAAAAAACCTGC 17 V_SOX7_03_M02807 TRANSFAC + 94889606 94889627 3.0E-06 CTTGAGTAACAATTCTGCTACA 22 V_LMX1_01_M01409 TRANSFAC + 94889876 94889892 7.0E-06 AGTATTAAATAAACAAA 17 V_LMX1_01_M01409 TRANSFAC - 94890748 94890764 6.0E-06 CCTTTTAATCAAATACC 17 V_CART1_01_M00416 TRANSFAC + 94889898 94889915 8.0E-06 TCCTTACTACAATTATCT 18 V_GFI1_01_M00250 TRANSFAC + 94889883 94889906 7.0E-06 AATAAACAAATCTGTTCCTTACTA 24 V_IRF2_01_M00063 TRANSFAC - 94890206 94890218 0.0E+00 GATAAGCGAAACT 13 V_IRF3_Q3_M01279 TRANSFAC + 94890204 94890216 4.0E-06 CCAGTTTCGCTTA 13 V_HNF3_Q6_M00791 TRANSFAC + 94889880 94889892 0.0E+00 TTAAATAAACAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 94889880 94889890 2.0E-06 TGTTTATTTAA 11 V_IRF_Q6_M00772 TRANSFAC + 94890203 94890217 9.0E-06 TCCAGTTTCGCTTAT 15 V_SOX_Q6_M01014 TRANSFAC - 94890139 94890151 9.0E-06 ATCATTGTTTTGC 13 V_GLIS2_03_M02759 TRANSFAC - 94890385 94890400 3.0E-06 CTTAGACCCCCCCGAA 16 V_SOX12_04_M02900 TRANSFAC - 94890567 94890582 6.0E-06 ACTTAGAGAAAGAAAG 16 V_HFH1_01_M00129 TRANSFAC - 94889882 94889893 1.0E-06 ATTTGTTTATTT 12 V_HB24_01_M01399 TRANSFAC + 94890747 94890761 6.0E-06 CGGTATTTGATTAAA 15 V_ARID3A_04_M02735 TRANSFAC - 94889875 94889891 3.0E-06 TTGTTTATTTAATACTC 17 V_ARID3A_04_M02735 TRANSFAC + 94889876 94889892 4.0E-06 AGTATTAAATAAACAAA 17 V_ARID3A_04_M02735 TRANSFAC - 94890748 94890764 4.0E-06 CCTTTTAATCAAATACC 17 V_ARID3A_04_M02735 TRANSFAC + 94890749 94890765 3.0E-06 GTATTTGATTAAAAGGT 17 V_BRACH_01_M00150 TRANSFAC + 94889852 94889875 9.0E-06 CGCTCAGCACCTAAGTGCCATGTG 24 V_BRACH_01_M00150 TRANSFAC - 94889852 94889875 6.0E-06 CACATGGCACTTAGGTGCTGAGCG 24 V_SOX11_03_M02795 TRANSFAC + 94890138 94890154 8.0E-06 AGCAAAACAATGATATT 17 V_LIM1_01_M01418 TRANSFAC + 94889876 94889892 3.0E-06 AGTATTAAATAAACAAA 17 V_TFIII_Q6_M00706 TRANSFAC + 94890934 94890942 6.0E-06 AGAGGGAGG 9 V_HFH8_01_M00294 TRANSFAC - 94889881 94889893 0.0E+00 ATTTGTTTATTTA 13 V_POU5F1_01_M01307 TRANSFAC - 94889572 94889581 4.0E-06 CATGCAAAAA 10 V_MYF6_04_M02885 TRANSFAC + 94890466 94890480 1.0E-06 AGTGACAGCCGCGCC 15 V_TAL1_01_M01591 TRANSFAC + 94890209 94890221 1.0E-05 TTCGCTTATCTCC 13 V_FOXL1_04_M02753 TRANSFAC - 94889559 94889575 7.0E-06 AAAACGTAAACAGTGTT 17 V_FOXL1_04_M02753 TRANSFAC + 94889879 94889895 0.0E+00 ATTAAATAAACAAATCT 17 V_FOXJ3_06_M02855 TRANSFAC + 94890135 94890151 1.0E-06 TGCAGCAAAACAATGAT 17 V_NANOG_01_M01123 TRANSFAC + 94890188 94890199 8.0E-06 CAGCCCATTTCC 12 V_ZFP206_01_M01742 TRANSFAC + 94890798 94890808 7.0E-06 TGCGCATGTGC 11 V_LMX1B_01_M01363 TRANSFAC - 94889876 94889892 8.0E-06 TTTGTTTATTTAATACT 17 V_FOXO3_01_M00477 TRANSFAC - 94889881 94889894 3.0E-06 GATTTGTTTATTTA 14 V_TBX15_02_M01264 TRANSFAC + 94890762 94890779 1.0E-06 AGGTCTTAACGTGGGTAA 18 V_FOXA2_03_M02260 TRANSFAC - 94889879 94889890 9.0E-06 TGTTTATTTAAT 12 V_NRF1_Q6_M00652 TRANSFAC - 94890798 94890807 9.0E-06 CACATGCGCA 10 V_PITX2_Q2_M00482 TRANSFAC - 94889529 94889539 1.0E-06 TGTAATCCCAG 11 V_DMRT2_01_M01147 TRANSFAC + 94891236 94891251 2.0E-06 GAAAGAAATACATTTT 16 V_HFH3_01_M00289 TRANSFAC - 94889881 94889893 0.0E+00 ATTTGTTTATTTA 13 V_FOXJ2_01_M00422 TRANSFAC + 94889878 94889895 0.0E+00 TATTAAATAAACAAATCT 18 V_SATB1_01_M01232 TRANSFAC + 94889939 94889950 3.0E-06 TATTAGTATTCA 12 V_EKLF_Q5_M01874 TRANSFAC - 94893724 94893733 9.0E-06 CCACACCCAC 10 V_SOX2_Q6_M01272 TRANSFAC - 94890139 94890154 0.0E+00 AATATCATTGTTTTGC 16 V_IRF1_01_M00062 TRANSFAC - 94890206 94890218 1.0E-05 GATAAGCGAAACT 13 V_IRF1_01_M00062 TRANSFAC + 94890614 94890626 6.0E-06 CAAAACCGACAGA 13 V_MOX1_01_M01443 TRANSFAC + 94889903 94889918 4.0E-06 ACTACAATTATCTTAG 16 V_UF1H3BETA_Q6_M01068 TRANSFAC + 94891122 94891135 2.0E-06 GGCAGGGGAGGGGC 14 V_SOX5_07_M02909 TRANSFAC - 94889608 94889624 5.0E-06 AGCAGAATTGTTACTCA 17 V_GATA6_04_M02757 TRANSFAC - 94890208 94890224 4.0E-06 AAAGGAGATAAGCGAAA 17 V_HNF1A_01_M02162 TRANSFAC + 94893435 94893448 8.0E-06 GGATAATAATTGTA 14 V_OBOX6_02_M03068 TRANSFAC + 94889777 94889791 6.0E-06 AAGTGAGGATTATAG 15 V_TCF3_05_M02920 TRANSFAC + 94889916 94889930 8.0E-06 TAGGCAAAAAAAAAC 15 V_TCF3_05_M02920 TRANSFAC + 94889917 94889931 3.0E-06 AGGCAAAAAAAAACC 15 V_ATATA_B_M00311 TRANSFAC - 94889955 94889964 9.0E-06 TTACTTAAGT 10 V_FOXK1_03_M02752 TRANSFAC - 94889559 94889575 7.0E-06 AAAACGTAAACAGTGTT 17 V_FOXK1_03_M02752 TRANSFAC + 94889879 94889895 1.0E-06 ATTAAATAAACAAATCT 17 V_NANOG_02_M01247 TRANSFAC - 94890561 94890580 4.0E-06 TTAGAGAAAGAAAGGATCGG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.