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HOMER3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9454 homer homolog 3 (Drosophila) chr19 - 19049358 - 19057041 19049858 Transcription Factor Binding Sites   Download all TFBS in the HOMER3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 19052106 19052124 9.0E-06 AAGCCGGCAGGGGGCGCAG 19 Sox1_HMG_DBD_dimeric_14_1 SELEX + 19051268 19051281 5.0E-06 TTAATATTAATTCA 14 Sox1_HMG_DBD_dimeric_14_1 SELEX - 19051268 19051281 5.0E-06 TGAATTAATATTAA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 19045818 19045831 7.0E-06 TAAAAATATGAAAA 14 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX - 19052412 19052429 7.0E-06 GTCTCCTGAGAAGGTGAC 18 EBF1_EBF_full_dimeric_14_1 SELEX + 19050678 19050691 4.0E-06 AATCCCCAGGGAGC 14 POU1F1_POU_DBD_monomeric_14_1 SELEX - 19045814 19045827 0.0E+00 AATATGAAAATTAG 14 NFKB1_MA0105.1 JASPAR + 19050912 19050922 8.0E-06 GGGGATGCCCC 11 POU2F2_POU_DBD_monomeric_11_1 SELEX - 19045816 19045826 8.0E-06 ATATGAAAATT 11 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 19051266 19051279 3.0E-06 GGTTAATATTAATT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 19051266 19051279 1.0E-06 AATTAATATTAACC 14 NFKB2_NFAT_DBD_dimeric_13_1 SELEX - 19050911 19050923 8.0E-06 GGGGGCATCCCCC 13 THRB_nuclearreceptor_DBD_dimeric_18_1 SELEX + 19052412 19052429 9.0E-06 GTCACCTTCTCAGGAGAC 18 THRB_nuclearreceptor_DBD_dimeric_18_1 SELEX - 19052412 19052429 7.0E-06 GTCTCCTGAGAAGGTGAC 18 Tcfcp2l1_MA0145.1 JASPAR - 19051003 19051016 4.0E-06 CCAGTCCAGGCCAG 14 POU3F3_POU_DBD_monomeric_13_1 SELEX - 19045815 19045827 1.0E-06 AATATGAAAATTA 13 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 19051266 19051279 4.0E-06 GGTTAATATTAATT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 19051266 19051279 3.0E-06 AATTAATATTAACC 14 RUNX2_RUNX_DBD_dimeric_18_1 SELEX - 19050890 19050907 6.0E-06 TGACCACAGAGGCCGCTG 18 MEF2A_MA0052.1 JASPAR + 19045823 19045832 8.0E-06 ATATTTTTAG 10 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 19050700 19050713 2.0E-06 AAGTTAAAAAGACA 14 SP1_MA0079.2 JASPAR - 19050849 19050858 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR - 19050869 19050878 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 19052145 19052154 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 19052159 19052168 3.0E-06 CCCCTCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 19050938 19050947 6.0E-06 AGCAGCTGCC 10 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX + 19050664 19050679 1.0E-06 AAGTCCAGAGTCCAAA 16 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 19051266 19051279 2.0E-06 GGTTAATATTAATT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 19051266 19051279 3.0E-06 AATTAATATTAACC 14 SP4_C2H2_full_monomeric_17_1 SELEX - 19051012 19051028 7.0E-06 CAGGACCCGCCCCCAGT 17 CTCF_C2H2_full_monomeric_17_1 SELEX + 19052107 19052123 3.0E-06 TGCGCCCCCTGCCGGCT 17 MZF1_5-13_MA0057.1 JASPAR + 19050852 19050861 4.0E-06 GGAGGGGGAA 10 POU3F1_POU_DBD_monomeric_12_1 SELEX - 19045815 19045826 2.0E-06 ATATGAAAATTA 12 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 19051266 19051279 3.0E-06 GGTTAATATTAATT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 19051266 19051279 4.0E-06 AATTAATATTAACC 14 ZNF282_C2H2_DBD_monomeric_17_1 SELEX - 19051105 19051121 4.0E-06 CTTTCCCCAAACGCTGC 17 POU2F1_POU_DBD_monomeric_12_1 SELEX - 19045816 19045827 4.0E-06 AATATGAAAATT 12 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 19051110 19051120 5.0E-06 TTTCCCCAAAC 11 TP53_MA0106.1 JASPAR - 19045794 19045813 4.0E-06 CCAGGCATGCTGGTGCATGC 20 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 19051109 19051120 9.0E-06 TTTCCCCAAACG 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 19045819 19045830 5.0E-06 AAAAATATGAAA 12 POU3F2_POU_DBD_monomeric_12_1 SELEX - 19045815 19045826 1.0E-06 ATATGAAAATTA 12 RUNX3_RUNX_DBD_dimeric_18_1 SELEX - 19050890 19050907 8.0E-06 TGACCACAGAGGCCGCTG 18 V_HNF3B_01_M00131 TRANSFAC + 19051267 19051281 9.0E-06 GTTAATATTAATTCA 15 V_AML_Q6_M00769 TRANSFAC + 19045834 19045848 9.0E-06 AGAGATGTGGTTTTA 15 V_PAX4_03_M00378 TRANSFAC - 19051032 19051043 4.0E-06 AACTCCCACCCG 12 V_COE1_Q6_M01871 TRANSFAC - 19050676 19050689 1.0E-06 TCCCTGGGGATTTG 14 V_OCT1_Q5_01_M00930 TRANSFAC + 19045815 19045825 1.0E-06 TAATTTTCATA 11 V_GABPA_04_M02858 TRANSFAC - 19050851 19050866 1.0E-06 CTGTCTTCCCCCTCCT 16 V_SP1_03_M02281 TRANSFAC - 19050849 19050858 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC - 19050869 19050878 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 19052145 19052154 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 19052159 19052168 3.0E-06 CCCCTCCCCC 10 V_OCT_C_M00210 TRANSFAC + 19045814 19045826 0.0E+00 CTAATTTTCATAT 13 V_SP1_02_M01303 TRANSFAC + 19052165 19052175 8.0E-06 GGGGCGGGGGC 11 V_PRX2_Q2_M02115 TRANSFAC - 19051268 19051276 8.0E-06 TAATATTAA 9 V_PRX2_Q2_M02115 TRANSFAC + 19051269 19051277 8.0E-06 TAATATTAA 9 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 19052400 19052415 8.0E-06 TGACAGGAGGGTGAGG 16 V_MEF2A_Q6_M02024 TRANSFAC + 19045824 19045833 4.0E-06 TATTTTTAGT 10 V_RPC155_01_M01798 TRANSFAC + 19050667 19050682 8.0E-06 TCCAGAGTCCAAATCC 16 V_TAL1_Q6_M00993 TRANSFAC - 19052365 19052374 1.0E-06 TCCATCTGCT 10 V_GC_01_M00255 TRANSFAC + 19051014 19051027 7.0E-06 TGGGGGCGGGTCCT 14 V_GC_01_M00255 TRANSFAC + 19052158 19052171 8.0E-06 AGGGGGAGGGGCGG 14 V_ARID5A_03_M02736 TRANSFAC + 19051268 19051281 6.0E-06 TTAATATTAATTCA 14 V_ZBP89_Q4_M01816 TRANSFAC - 19050868 19050877 4.0E-06 CCCTCCCCCA 10 V_ZBP89_Q4_M01816 TRANSFAC - 19052144 19052153 4.0E-06 CCCTCCCCCA 10 V_P53_03_M01651 TRANSFAC + 19045792 19045811 2.0E-06 AGGCATGCACCAGCATGCCT 20 V_P53_03_M01651 TRANSFAC - 19045792 19045811 2.0E-06 AGGCATGCTGGTGCATGCCT 20 V_SP1_Q6_M00196 TRANSFAC + 19052158 19052170 4.0E-06 AGGGGGAGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 19052163 19052175 9.0E-06 GAGGGGCGGGGGC 13 V_ARID3A_02_M02839 TRANSFAC - 19045816 19045830 2.0E-06 AAAAATATGAAAATT 15 V_MAZ_Q6_01_M02023 TRANSFAC + 19050869 19050882 6.0E-06 GGGGGAGGGGAGGC 14 V_MAZ_Q6_01_M02023 TRANSFAC + 19052159 19052172 3.0E-06 GGGGGAGGGGCGGG 14 V_OCT1_05_M00161 TRANSFAC + 19045814 19045827 0.0E+00 CTAATTTTCATATT 14 V_MEF2_03_M00232 TRANSFAC - 19045818 19045839 7.0E-06 ATCTCTACTAAAAATATGAAAA 22 V_SFPI1_04_M02896 TRANSFAC + 19051274 19051287 1.0E-05 TTAATTCAGGATCC 14 V_NFE4_Q5_M02105 TRANSFAC + 19050921 19050932 5.0E-06 CCCCCTATCCTG 12 V_SP1SP3_Q4_M01219 TRANSFAC - 19050849 19050859 1.0E-05 CCCCCTCCTCC 11 V_SP1SP3_Q4_M01219 TRANSFAC + 19052959 19052969 5.0E-06 CCGCCCCCTCT 11 V_MUSCLE_INI_B_M00321 TRANSFAC - 19050974 19050994 3.0E-06 CCCCACCCCCACTCAGGGGCT 21 V_RREB1_01_M00257 TRANSFAC - 19051034 19051047 7.0E-06 CCCCAACTCCCACC 14 V_HNF4A_Q6_01_M02016 TRANSFAC + 19050666 19050680 9.0E-06 GTCCAGAGTCCAAAT 15 V_STAF_02_M00264 TRANSFAC + 19045796 19045816 4.0E-06 ATGCACCAGCATGCCTGGCTA 21 V_CTCF_02_M01259 TRANSFAC - 19052108 19052127 8.0E-06 AAAAAGCCGGCAGGGGGCGC 20 V_CTCF_01_M01200 TRANSFAC - 19052106 19052125 4.0E-06 AAAGCCGGCAGGGGGCGCAG 20 V_MZF1_02_M00084 TRANSFAC + 19050849 19050861 2.0E-06 GGAGGAGGGGGAA 13 V_OCT_Q6_M00795 TRANSFAC + 19045815 19045825 1.0E-06 TAATTTTCATA 11 V_HNF4A_02_M02868 TRANSFAC + 19050666 19050681 3.0E-06 GTCCAGAGTCCAAATC 16 V_IRF7_01_M00453 TRANSFAC - 19045814 19045831 2.0E-06 TAAAAATATGAAAATTAG 18 V_NEUROD_02_M01288 TRANSFAC + 19050940 19050951 5.0E-06 CAGCTGCTGTCC 12 V_SP4_Q5_M01273 TRANSFAC - 19052159 19052169 5.0E-06 GCCCCTCCCCC 11 V_MTF1_06_M02882 TRANSFAC - 19045815 19045828 1.0E-06 AAATATGAAAATTA 14 V_GABPBETA_Q3_M01876 TRANSFAC - 19051072 19051082 4.0E-06 ACCGGAAGGGC 11 V_HNF1_01_M00132 TRANSFAC + 19051266 19051280 5.0E-06 GGTTAATATTAATTC 15 V_ZBTB3_03_M02825 TRANSFAC - 19045724 19045740 9.0E-06 CATGTCACTGCACTCCA 17 V_OCT1_Q6_M00195 TRANSFAC - 19045814 19045828 0.0E+00 AAATATGAAAATTAG 15 V_HNF4_Q6_01_M01031 TRANSFAC + 19050665 19050678 7.0E-06 AGTCCAGAGTCCAA 14 V_MSX1_01_M00394 TRANSFAC + 19048741 19048749 7.0E-06 CTGTAATTG 9 V_P53_04_M01652 TRANSFAC + 19045792 19045811 1.0E-06 AGGCATGCACCAGCATGCCT 20 V_P53_04_M01652 TRANSFAC - 19045792 19045811 1.0E-05 AGGCATGCTGGTGCATGCCT 20 V_PITX2_Q2_M00482 TRANSFAC - 19045782 19045792 1.0E-06 TGTAATCCCAG 11 V_P53_01_M00034 TRANSFAC - 19045792 19045811 4.0E-06 AGGCATGCTGGTGCATGCCT 20 V_ZFP281_01_M01597 TRANSFAC + 19050848 19050858 7.0E-06 TGGAGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 19050868 19050878 1.0E-06 TGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 19050984 19050994 1.0E-06 TGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 19052144 19052154 1.0E-06 TGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 19052158 19052168 3.0E-06 AGGGGGAGGGG 11 V_MEF3_B_M00319 TRANSFAC - 19050965 19050977 7.0E-06 GGCTCCGGTTTCA 13 V_OCT1_06_M00162 TRANSFAC + 19045814 19045827 0.0E+00 CTAATTTTCATATT 14 V_EGR1_06_M02744 TRANSFAC + 19052958 19052971 4.0E-06 GCCGCCCCCTCTCT 14 V_P63_01_M01656 TRANSFAC + 19045792 19045811 8.0E-06 AGGCATGCACCAGCATGCCT 20 V_P63_01_M01656 TRANSFAC - 19045792 19045811 4.0E-06 AGGCATGCTGGTGCATGCCT 20 V_ZFP281_04_M02831 TRANSFAC - 19050866 19050880 2.0E-06 CTCCCCTCCCCCACC 15 V_ZFP281_04_M02831 TRANSFAC - 19052142 19052156 5.0E-06 ATCCCCTCCCCCATA 15 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 19045839 19045846 1.0E-05 TGTGGTTT 8 V_HNF1A_Q5_M02013 TRANSFAC + 19051266 19051276 7.0E-06 GGTTAATATTA 11 V_FOXO1_04_M01969 TRANSFAC + 19050704 19050723 1.0E-06 TAAAAAGACAAGATGTAGAC 20 V_SP1_Q2_01_M00933 TRANSFAC - 19052164 19052173 7.0E-06 CCCCGCCCCT 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 19050866 19050879 0.0E+00 GGTGGGGGAGGGGA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 19050982 19050995 2.0E-06 AGTGGGGGTGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 19052142 19052155 6.0E-06 TATGGGGGAGGGGA 14 V_SP1_Q4_01_M00932 TRANSFAC + 19052158 19052170 3.0E-06 AGGGGGAGGGGCG 13 V_PAX4_04_M00380 TRANSFAC + 19051270 19051299 2.0E-06 AATATTAATTCAGGATCCCATCCCCACCCG 30

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.