Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

OTOF Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9381 otoferlin chr2 - 26781066 - 26786566 26781566 Transcription Factor Binding Sites   Download all TFBS in the OTOF promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 26785251 26785262 3.0E-06 TGACAGGGGTCA 12 HSF1_HSF_full_trimeric_13_1 SELEX - 26785913 26785925 9.0E-06 TTCTCGCATTTTC 13 EWSR1-FLI1_MA0149.1 JASPAR + 26785994 26786011 2.0E-06 TGAAGGAGGGAAGGATAC 18 STAT1_MA0137.2 JASPAR - 26786137 26786151 3.0E-06 GCTTTCCAAGAAAAA 15 Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 26785251 26785262 3.0E-06 TGACAGGGGTCA 12 RUNX3_RUNX_DBD_dimeric_16_1 SELEX - 26785699 26785714 2.0E-06 AAACCACAAACCTCTA 16 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 26785251 26785262 6.0E-06 TGACAGGGGTCA 12 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 26785501 26785519 8.0E-06 GAACTCGGTCAGTAGGGTG 19 RUNX3_RUNX_full_monomeric_10_1 SELEX - 26785705 26785714 1.0E-06 AAACCACAAA 10 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 26785251 26785262 5.0E-06 TGACAGGGGTCA 12 RFX2_RFX_DBD_dimeric_15_1 SELEX + 26785406 26785420 6.0E-06 CGTTGCCAGGTGACC 15 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 26785706 26785714 8.0E-06 AAACCACAA 9 RUNX2_RUNX_DBD_dimeric_16_1 SELEX - 26785699 26785714 2.0E-06 AAACCACAAACCTCTA 16 HSF4_HSF_DBD_trimeric_13_1 SELEX - 26785913 26785925 7.0E-06 TTCTCGCATTTTC 13 RFX3_RFX_DBD_dimeric_15_1 SELEX + 26785406 26785420 2.0E-06 CGTTGCCAGGTGACC 15 Mycn_MA0104.2 JASPAR - 26785856 26785865 8.0E-06 CCCACGTGGC 10 RFX4_RFX_DBD_dimeric_15_1 SELEX + 26785406 26785420 3.0E-06 CGTTGCCAGGTGACC 15 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 26785251 26785262 7.0E-06 TGACAGGGGTCA 12 MEIS2_MEIS_DBD_dimeric_14_1 SELEX + 26785250 26785263 4.0E-06 GTGACAGGGGTCAC 14 RUNX1_MA0002.2 JASPAR + 26785704 26785714 1.0E-06 GTTTGTGGTTT 11 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 26785251 26785262 4.0E-06 TGACAGGGGTCA 12 V_STAT5A_Q6_M01890 TRANSFAC + 26786136 26786148 1.0E-06 GTTTTTCTTGGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 26786140 26786152 8.0E-06 AGCTTTCCAAGAA 13 V_TEL1_02_M02070 TRANSFAC + 26785275 26785284 5.0E-06 CGCGGAAATG 10 V_AML_Q6_M00769 TRANSFAC + 26785702 26785716 0.0E+00 AGGTTTGTGGTTTCA 15 V_OSF2_Q6_M00731 TRANSFAC - 26785705 26785712 1.0E-05 ACCACAAA 8 V_BCL6B_03_M02740 TRANSFAC + 26786137 26786152 4.0E-06 TTTTTCTTGGAAAGCT 16 V_AML3_Q6_M01856 TRANSFAC - 26785706 26785713 1.0E-05 AACCACAA 8 V_STAT_Q6_M00777 TRANSFAC - 26786128 26786140 3.0E-06 AAAACTTCTGGGA 13 V_STAT_Q6_M00777 TRANSFAC + 26786135 26786147 2.0E-06 AGTTTTTCTTGGA 13 V_RORA_Q4_M01138 TRANSFAC + 26786060 26786070 3.0E-06 TTAATGGGTCA 11 V_STAT5B_01_M00459 TRANSFAC + 26786137 26786151 7.0E-06 TTTTTCTTGGAAAGC 15 V_SP1_02_M01303 TRANSFAC - 26781636 26781646 8.0E-06 GGGGCGGGGGC 11 V_COUPTF_Q6_M01036 TRANSFAC - 26785245 26785267 8.0E-06 CTGGGTGACCCCTGTCACTTGCC 23 V_GM497_04_M02864 TRANSFAC - 26781682 26781697 4.0E-06 ACACACACACACGCAC 16 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 26785974 26785988 4.0E-06 CAAGGTCAGTACTTG 15 V_ELF4_04_M02850 TRANSFAC - 26786133 26786149 3.0E-06 TTTCCAAGAAAAACTTC 17 V_ZFP105_03_M02827 TRANSFAC - 26785983 26785997 5.0E-06 TTCAACCAACAAGTA 15 V_RUNX1_01_M02257 TRANSFAC + 26785704 26785714 1.0E-06 GTTTGTGGTTT 11 V_ZBED6_01_M01598 TRANSFAC + 26785388 26785399 3.0E-06 CAGGCTCGCCGC 12 V_HIC1_03_M01073 TRANSFAC - 26785491 26785508 3.0E-06 GTAGGGTGCCCGCGCTGC 18 V_RFX1_01_M00280 TRANSFAC - 26785405 26785421 3.0E-06 GGGTCACCTGGCAACGG 17 V_AML2_01_M01759 TRANSFAC - 26785706 26785713 1.0E-05 AACCACAA 8 V_SP1_Q6_M00196 TRANSFAC - 26781636 26781648 9.0E-06 GAGGGGCGGGGGC 13 V_MAZ_Q6_01_M02023 TRANSFAC + 26785841 26785854 7.0E-06 GGGGGAGGAGATGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 26785995 26786008 3.0E-06 GAAGGAGGGAAGGA 14 V_IRF3_06_M02871 TRANSFAC - 26786099 26786112 5.0E-06 TGTGAAAGGACCGA 14 V_PEBP_Q6_M00984 TRANSFAC - 26785702 26785716 4.0E-06 TGAAACCACAAACCT 15 V_OCAB_Q6_M02113 TRANSFAC + 26786257 26786267 9.0E-06 ACATGCAAGTC 11 V_STAT4_Q5_M02117 TRANSFAC - 26786139 26786148 5.0E-06 TTCCAAGAAA 10 V_MYCN_01_M02259 TRANSFAC - 26785856 26785865 8.0E-06 CCCACGTGGC 10 V_TEL1_01_M01993 TRANSFAC + 26785275 26785284 5.0E-06 CGCGGAAATG 10 V_MYOGNF1_01_M00056 TRANSFAC - 26786009 26786037 3.0E-06 AGGTTCTTCGAGCGGGCACCCACCCGGTA 29 V_E2F3_03_M02743 TRANSFAC - 26785297 26785311 4.0E-06 CATAGGGCGCGCCCA 15 V_STAT1STAT1_Q3_M01212 TRANSFAC - 26786138 26786150 1.0E-06 CTTTCCAAGAAAA 13 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 26782654 26782668 7.0E-06 CCTGAGGTCAGGAGG 15 V_HSF2_02_M01244 TRANSFAC + 26785913 26785925 7.0E-06 GAAAATGCGAGAA 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 26785994 26786011 2.0E-06 TGAAGGAGGGAAGGATAC 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 26785707 26785714 1.0E-05 TGTGGTTT 8 V_FREAC4_01_M00292 TRANSFAC - 26786217 26786232 9.0E-06 CCAGAGTAAAGAAAGG 16 V_SP1_Q2_01_M00933 TRANSFAC + 26781638 26781647 7.0E-06 CCCCGCCCCT 10 V_ZID_01_M00085 TRANSFAC - 26785847 26785859 2.0E-06 TGGCTCCATCTCC 13 V_LTF_Q6_M01692 TRANSFAC - 26785246 26785254 1.0E-05 GTCACTTGC 9 V_T3RALPHA_Q6_M01724 TRANSFAC - 26782658 26782668 5.0E-06 CCTGAGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.