Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NRXN3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9369 neurexin 3 chr14 + 78865073 - 78870573 78870073 Transcription Factor Binding Sites   Download all TFBS in the NRXN3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 78872119 78872136 7.0E-06 TACAAAAATATGGACTTA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 78872119 78872136 5.0E-06 TAAGTCCATATTTTTGTA 18 LBX2_homeodomain_DBD_dimeric_13_1 SELEX + 78869680 78869692 9.0E-06 ATCAAAGTAGTTA 13 SOX10_HMG_full_dimeric_16_1 SELEX - 78868421 78868436 9.0E-06 CACAATGTACAATGTG 16 POU2F1_POU_DBD_dimeric_14_1 SELEX + 78868478 78868491 9.0E-06 TCTGAATATTGAAA 14 NFIA_NFI_full_dimeric_15_1 SELEX - 78872007 78872021 3.0E-06 TTGGCTCCCCGCCAG 15 HSF1_HSF_full_trimeric_13_1 SELEX + 78868662 78868674 2.0E-06 TTCAAGAACATTC 13 EBF1_EBF_full_dimeric_14_1 SELEX + 78869850 78869863 7.0E-06 AATCCCCTGGGAGA 14 TBX5_TBX_DBD_dimeric_20_1 SELEX + 78868406 78868425 3.0E-06 TGGTGCGGTTTATTACACAT 20 TBX5_TBX_DBD_dimeric_20_1 SELEX - 78868406 78868425 8.0E-06 ATGTGTAATAAACCGCACCA 20 SOX8_HMG_DBD_dimeric_16_1 SELEX - 78868421 78868436 9.0E-06 CACAATGTACAATGTG 16 TBX1_TBX_DBD_dimeric_23_1 SELEX + 78871638 78871660 7.0E-06 TTTTGCCCTTTGGAGGTGATAAA 23 TBX1_TBX_DBD_dimeric_23_1 SELEX - 78871638 78871660 7.0E-06 TTTATCACCTCCAAAGGGCAAAA 23 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 78868442 78868460 9.0E-06 TATGCAGGTTAGTGGTGCA 19 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 78868383 78868397 7.0E-06 AATGGATGATTAACT 15 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 78868478 78868491 5.0E-06 TCTGAATATTGAAA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 78868478 78868491 7.0E-06 TTTCAATATTCAGA 14 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 78868425 78868441 8.0E-06 TTGTACATTGTGTGCTA 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 78868425 78868441 4.0E-06 TAGCACACAATGTACAA 17 TBX4_TBX_DBD_dimeric_20_1 SELEX + 78868406 78868425 3.0E-06 TGGTGCGGTTTATTACACAT 20 TBX4_TBX_DBD_dimeric_20_1 SELEX - 78868406 78868425 5.0E-06 ATGTGTAATAAACCGCACCA 20 SOX7_HMG_full_dimeric_16_1 SELEX - 78868421 78868436 1.0E-05 CACAATGTACAATGTG 16 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 78872098 78872114 4.0E-06 ACATTCATTTCATTCAA 17 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 78865783 78865797 7.0E-06 GTAATTGACCATCAT 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 78865784 78865796 8.0E-06 TGATGGTCAATTA 13 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 78865784 78865796 5.0E-06 TAATTGACCATCA 13 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 78868656 78868666 7.0E-06 TTGAAGGTGAT 11 NFIB_NFI_full_dimeric_15_1 SELEX - 78872007 78872021 3.0E-06 TTGGCTCCCCGCCAG 15 PPARG_MA0066.1 JASPAR + 78869766 78869785 1.0E-06 TTAGGTCCATGTGACTTCCT 20 SOX18_HMG_full_dimeric_15_3 SELEX + 78872100 78872114 8.0E-06 ATTCATTTCATTCAA 15 TEAD1_TEA_full_dimeric_17_1 SELEX + 78872098 78872114 7.0E-06 ACATTCATTTCATTCAA 17 SRY_HMG_DBD_dimeric_13_1 SELEX + 78868663 78868675 4.0E-06 TCAAGAACATTCA 13 REST_MA0138.2 JASPAR - 78865834 78865854 0.0E+00 TCCAGCACCCTGGACAGCTCC 21 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 78868383 78868397 9.0E-06 AATGGATGATTAACT 15 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 78868425 78868441 6.0E-06 TTGTACATTGTGTGCTA 17 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 78868425 78868441 6.0E-06 TAGCACACAATGTACAA 17 V_MEQ_01_M02049 TRANSFAC - 78868467 78868475 2.0E-06 AACACACAT 9 V_CDP_03_M01342 TRANSFAC + 78868383 78868399 9.0E-06 AATGGATGATTAACTGT 17 V_DBX1_01_M01483 TRANSFAC + 78869687 78869703 1.0E-06 TAGTTATTTAAAGATTG 17 V_GEN_INI_B_M00315 TRANSFAC - 78868492 78868499 1.0E-05 CCTCATTT 8 V_LEF1_04_M02774 TRANSFAC - 78869675 78869691 5.0E-06 AACTACTTTGATCAGAA 17 V_FLI1_Q6_M01208 TRANSFAC - 78869776 78869786 1.0E-06 CAGGAAGTCAC 11 V_XPF1_Q6_M00684 TRANSFAC - 78868473 78868482 1.0E-06 TCAGAAGAAC 10 V_NRSF_Q4_M01028 TRANSFAC + 78865835 78865853 1.0E-06 GAGCTGTCCAGGGTGCTGG 19 V_ZEC_01_M01081 TRANSFAC - 78869639 78869651 5.0E-06 GAAGCTAAGTTGC 13 V_COE1_Q6_M01871 TRANSFAC - 78869848 78869861 1.0E-06 TCCCAGGGGATTTA 14 V_AR_Q6_01_M01996 TRANSFAC + 78868427 78868441 7.0E-06 GTACATTGTGTGCTA 15 V_MAFB_03_M02879 TRANSFAC + 78868483 78868497 4.0E-06 ATATTGAAAAAATGA 15 V_MEF2_02_M00231 TRANSFAC - 78869685 78869706 1.0E-06 CCACAATCTTTAAATAACTACT 22 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 78865859 78865872 6.0E-06 TGAGAGCTTTAAGG 14 V_RP58_01_M00532 TRANSFAC - 78869936 78869947 8.0E-06 CACACATCTGGG 12 V_CUX1_03_M02958 TRANSFAC + 78868383 78868399 9.0E-06 AATGGATGATTAACTGT 17 V_STAT5B_01_M00459 TRANSFAC + 78869752 78869766 8.0E-06 GCATTCTGGGAATCT 15 V_STAT6_01_M00494 TRANSFAC - 78865813 78865820 7.0E-06 TATTTCCA 8 V_LHX3_01_M01471 TRANSFAC + 78869686 78869702 8.0E-06 GTAGTTATTTAAAGATT 17 V_SP1_02_M01303 TRANSFAC + 78871952 78871962 3.0E-06 GGGGCGGGGGG 11 V_PU1_Q4_M01172 TRANSFAC - 78868492 78868510 5.0E-06 AGTACCATTTTCCTCATTT 19 V_TCFAP2E_04_M02926 TRANSFAC + 78868483 78868496 3.0E-06 ATATTGAAAAAATG 14 V_MEF2A_Q6_M02024 TRANSFAC + 78869691 78869700 4.0E-06 TATTTAAAGA 10 V_STAT4_Q4_M01666 TRANSFAC + 78869842 78869855 4.0E-06 TTCAAATAAATCCC 14 V_BARBIE_01_M00238 TRANSFAC + 78869692 78869706 3.0E-06 ATTTAAAGATTGTGG 15 V_HMGA2_01_M01300 TRANSFAC - 78868490 78868504 7.0E-06 ATTTTCCTCATTTTT 15 V_TST1_01_M00133 TRANSFAC + 78865788 78865802 6.0E-06 GGTCAATTACAGTAT 15 V_COMP1_01_M00057 TRANSFAC + 78869812 78869835 8.0E-06 AGATAGGTTTGGCATGACACAATC 24 V_GEN_INI3_B_M00314 TRANSFAC - 78868492 78868499 1.0E-05 CCTCATTT 8 V_TCF3_04_M02816 TRANSFAC + 78869675 78869691 2.0E-06 TTCTGATCAAAGTAGTT 17 V_FOXA2_02_M02853 TRANSFAC + 78871575 78871589 1.0E-05 AAAACTAGCAAAGGG 15 V_PR_01_M00954 TRANSFAC - 78868660 78868686 4.0E-06 GTTTTCACTACTGAATGTTCTTGAAGG 27 V_SOX8_04_M02912 TRANSFAC + 78872098 78872111 6.0E-06 ACATTCATTTCATT 14 V_POLY_C_M00212 TRANSFAC + 78869845 78869862 4.0E-06 AAATAAATCCCCTGGGAG 18 V_DOBOX4_01_M01359 TRANSFAC + 78869715 78869731 3.0E-06 AGAGTAGATACCCCTGG 17 V_RSRFC4_Q2_M00407 TRANSFAC - 78869686 78869702 1.0E-05 AATCTTTAAATAACTAC 17 V_AP1_Q6_01_M00925 TRANSFAC - 78871612 78871620 2.0E-06 ATGACTCAA 9 V_SP1_Q6_M00196 TRANSFAC + 78871950 78871962 9.0E-06 AAGGGGCGGGGGG 13 V_PAX2_01_M00098 TRANSFAC + 78869663 78869681 1.0E-06 TTTAGTCATGCATTCTGAT 19 V_MEF2_03_M00232 TRANSFAC - 78869685 78869706 2.0E-06 CCACAATCTTTAAATAACTACT 22 V_REST_01_M01256 TRANSFAC + 78865830 78865851 0.0E+00 CCAGGGAGCTGTCCAGGGTGCT 22 V_GR_01_M00955 TRANSFAC - 78868660 78868686 4.0E-06 GTTTTCACTACTGAATGTTCTTGAAGG 27 V_HBP1_03_M02762 TRANSFAC + 78868377 78868392 1.0E-06 TCACTGAATGGATGAT 16 V_GR_Q6_M00192 TRANSFAC + 78868424 78868442 0.0E+00 ATTGTACATTGTGTGCTAT 19 V_GR_Q6_M00192 TRANSFAC + 78869645 78869663 6.0E-06 TAGCTTCAAAATGTCCTCT 19 V_TCF7_03_M02817 TRANSFAC + 78869675 78869691 4.0E-06 TTCTGATCAAAGTAGTT 17 V_MEF2_Q6_01_M00941 TRANSFAC + 78869688 78869699 6.0E-06 AGTTATTTAAAG 12 V_NCX_02_M01420 TRANSFAC + 78869687 78869703 6.0E-06 TAGTTATTTAAAGATTG 17 V_NCX_02_M01420 TRANSFAC - 78869687 78869703 8.0E-06 CAATCTTTAAATAACTA 17 V_ARID3A_04_M02735 TRANSFAC - 78868644 78868660 5.0E-06 GTGATTTTTTAAAATTC 17 V_AP1_01_M00517 TRANSFAC + 78871610 78871622 8.0E-06 GATTGAGTCATAC 13 V_IK3_01_M00088 TRANSFAC - 78872070 78872082 6.0E-06 GTCTGGGAATATT 13 V_SOX17_04_M02904 TRANSFAC + 78869835 78869851 1.0E-05 CTGCAGATTCAAATAAA 17 V_SOX17_04_M02904 TRANSFAC - 78871533 78871549 8.0E-06 CAGAACATTCATCTACT 17 V_SOX17_04_M02904 TRANSFAC + 78872094 78872110 8.0E-06 GGACACATTCATTTCAT 17 V_MAF_Q6_01_M00983 TRANSFAC + 78869782 78869792 4.0E-06 TCCTGAGTCAG 11 V_GATA4_Q3_M00632 TRANSFAC + 78871591 78871602 3.0E-06 AGATAACAGTCA 12 V_GR_Q6_02_M01836 TRANSFAC + 78869651 78869663 9.0E-06 CAAAATGTCCTCT 13 V_ELF1_Q6_M00746 TRANSFAC + 78868492 78868503 6.0E-06 AAATGAGGAAAA 12 V_HBP1_04_M02866 TRANSFAC + 78868417 78868433 1.0E-05 ATTACACATTGTACATT 17 V_GCNF_01_M00526 TRANSFAC + 78865783 78865800 8.0E-06 ATGATGGTCAATTACAGT 18 V_AP1_Q4_01_M00926 TRANSFAC + 78871613 78871620 1.0E-05 TGAGTCAT 8 V_GATA1_05_M00346 TRANSFAC + 78871589 78871598 2.0E-06 GCAGATAACA 10 V_MTF1_06_M02882 TRANSFAC + 78868645 78868658 4.0E-06 AATTTTAAAAAATC 14 V_LEF1_Q2_01_M01022 TRANSFAC + 78869679 78869688 4.0E-06 GATCAAAGTA 10 V_FOXL1_02_M02857 TRANSFAC + 78869839 78869854 9.0E-06 AGATTCAAATAAATCC 16 V_FOXL1_04_M02753 TRANSFAC - 78871723 78871739 5.0E-06 AAAAAGTAAGCAAAGCA 17 V_ZSCAN4_04_M02942 TRANSFAC - 78868428 78868443 1.0E-06 CATAGCACACAATGTA 16 V_NKX3A_02_M01383 TRANSFAC - 78869679 78869695 7.0E-06 AAATAACTACTTTGATC 17 V_CBF_01_M01079 TRANSFAC + 78868404 78868419 7.0E-06 AATGGTGCGGTTTATT 16 V_PARP_Q3_M01211 TRANSFAC + 78865812 78865821 8.0E-06 TTGGAAATAC 10 V_GEN_INI2_B_M00313 TRANSFAC - 78868492 78868499 1.0E-05 CCTCATTT 8 V_ZBTB4_04_M02929 TRANSFAC - 78869898 78869913 8.0E-06 CATACACTGGGAGCTT 16 V_FRA1_Q5_M01267 TRANSFAC + 78871613 78871620 1.0E-05 TGAGTCAT 8 V_NRF2_Q4_M00821 TRANSFAC + 78869781 78869793 3.0E-06 TTCCTGAGTCAGT 13 V_NRSF_01_M00256 TRANSFAC - 78865834 78865854 0.0E+00 TCCAGCACCCTGGACAGCTCC 21 V_MSX1_01_M00394 TRANSFAC - 78865791 78865799 7.0E-06 CTGTAATTG 9 V_TBX15_02_M01264 TRANSFAC + 78869941 78869958 8.0E-06 ATGTGTGCAGGTTTCTAA 18 V_REST_02_M02256 TRANSFAC - 78865834 78865854 0.0E+00 TCCAGCACCCTGGACAGCTCC 21 V_SOX8_03_M02808 TRANSFAC + 78868389 78868405 6.0E-06 TGATTAACTGTTCTGAA 17 V_DMRT2_01_M01147 TRANSFAC - 78869681 78869696 5.0E-06 TAAATAACTACTTTGA 16 V_HSF2_02_M01244 TRANSFAC - 78868662 78868674 2.0E-06 GAATGTTCTTGAA 13 V_NFE2_Q6_M02104 TRANSFAC + 78872058 78872073 6.0E-06 CCTGGCTCAGCTAATA 16 V_HNF1A_Q5_M02013 TRANSFAC - 78868387 78868397 3.0E-06 AGTTAATCATC 11 V_PR_02_M00957 TRANSFAC + 78868382 78868408 4.0E-06 GAATGGATGATTAACTGTTCTGAATGG 27 V_PR_02_M00957 TRANSFAC - 78868660 78868686 5.0E-06 GTTTTCACTACTGAATGTTCTTGAAGG 27 V_MEF2_01_M00006 TRANSFAC + 78868648 78868663 3.0E-06 TTTAAAAAATCACCTT 16 V_SP1_Q2_01_M00933 TRANSFAC - 78871951 78871960 7.0E-06 CCCCGCCCCT 10 V_MEF2A_05_M01301 TRANSFAC + 78869688 78869699 2.0E-06 AGTTATTTAAAG 12 V_HMEF2_Q6_M00406 TRANSFAC - 78869686 78869701 3.0E-06 ATCTTTAAATAACTAC 16 V_SP1_Q4_01_M00932 TRANSFAC + 78871950 78871962 9.0E-06 AAGGGGCGGGGGG 13 V_TAACC_B_M00331 TRANSFAC - 78869603 78869625 9.0E-06 AGAAAAGAAGTCAGGGCGAAAGC 23 V_GLIS2_04_M02863 TRANSFAC + 78868482 78868495 1.0E-05 AATATTGAAAAAAT 14 V_CEBPG_Q6_01_M01869 TRANSFAC + 78869994 78870005 8.0E-06 AGTTGCAAAATC 12 V_AR_01_M00481 TRANSFAC + 78868426 78868440 2.0E-06 TGTACATTGTGTGCT 15 V_CEBPA_Q6_M01866 TRANSFAC - 78869994 78870006 4.0E-06 TGATTTTGCAACT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.