Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

VAMP3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9341 vesicle-associated membrane protein 3 chr1 + 7826328 - 7831828 7831328 Transcription Factor Binding Sites   Download all TFBS in the VAMP3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX + 7831302 7831313 5.0E-06 GCCCCGCCCACT 12 GABPA_MA0062.2 JASPAR - 7831277 7831287 3.0E-06 CCGGAAGTGGG 11 SPIC_ETS_full_monomeric_14_1 SELEX - 7830896 7830909 7.0E-06 TGAAATAGGAAGTC 14 ZNF435_C2H2_full_dimeric_18_1 SELEX + 7831080 7831097 3.0E-06 CACGTTTACAGACCACGT 18 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 7830822 7830835 7.0E-06 CACAAATATTTGTC 14 SP4_C2H2_full_monomeric_17_1 SELEX + 7831299 7831315 2.0E-06 TTCGCCCCGCCCACTCC 17 SP1_C2H2_DBD_monomeric_11_1 SELEX + 7831302 7831312 1.0E-05 GCCCCGCCCAC 11 Gata1_MA0035.2 JASPAR - 7830166 7830176 5.0E-06 GGAGATAAGGA 11 Foxd3_MA0041.1 JASPAR + 7830825 7830836 1.0E-05 AAATATTTGTGT 12 GABPA_ETS_full_monomeric_10_1 SELEX - 7831279 7831288 9.0E-06 GCCGGAAGTG 10 PLAG1_MA0163.1 JASPAR - 7831183 7831196 6.0E-06 GAGGGCCACAGGGG 14 NHLH1_bHLH_full_dimeric_10_1 SELEX + 7831431 7831440 9.0E-06 CGCAGCTGCC 10 Zfx_MA0146.1 JASPAR - 7831547 7831560 7.0E-06 GCAGCCCCGGCCTG 14 V_POU3F3_01_M03090 TRANSFAC + 7830224 7830240 1.0E-05 AAATTTTGCATCATGGA 17 V_SOX40_04_M02908 TRANSFAC + 7830798 7830813 0.0E+00 GCAGATTATAATATGA 16 V_SOX40_04_M02908 TRANSFAC - 7830798 7830813 0.0E+00 TCATATTATAATCTGC 16 V_SRY_07_M02813 TRANSFAC + 7830798 7830813 1.0E-06 GCAGATTATAATATGA 16 V_SRY_07_M02813 TRANSFAC - 7830798 7830813 1.0E-06 TCATATTATAATCTGC 16 V_FOXD3_01_M00130 TRANSFAC + 7830825 7830836 5.0E-06 AAATATTTGTGT 12 V_NKX29_01_M01352 TRANSFAC - 7830904 7830920 1.0E-06 TCTAAAGTAGTTGAAAT 17 V_LMAF_Q2_M01139 TRANSFAC - 7831398 7831406 6.0E-06 GGTCAGCAG 9 V_GABP_B_M00341 TRANSFAC - 7831277 7831288 4.0E-06 GCCGGAAGTGGG 12 V_OCTAMER_01_M01324 TRANSFAC + 7830224 7830240 1.0E-05 AAATTTTGCATCATGGA 17 V_PITX3_Q2_M01735 TRANSFAC - 7830195 7830203 2.0E-06 TGGATTAGA 9 V_PU1_Q4_M01172 TRANSFAC - 7832278 7832296 4.0E-06 TCCATGCTTTTCCTCCTTT 19 V_SOX21_03_M02803 TRANSFAC + 7830798 7830813 7.0E-06 GCAGATTATAATATGA 16 V_TCFAP2E_04_M02926 TRANSFAC + 7829918 7829931 8.0E-06 TGAAAGAAAAAATG 14 V_WT1_Q6_01_M02036 TRANSFAC + 7831269 7831278 4.0E-06 CGCCCCCGCC 10 V_COMP1_01_M00057 TRANSFAC + 7831753 7831776 6.0E-06 TGAGAGGAATGGGGACGACAGCCC 24 V_FKLF_Q5_M01837 TRANSFAC + 7831580 7831589 5.0E-06 GGGGTGGGCG 10 V_KROX_Q6_M00982 TRANSFAC + 7831304 7831317 1.0E-06 CCCGCCCACTCCCC 14 V_ER81_02_M02065 TRANSFAC - 7831279 7831288 1.0E-05 GCCGGAAGTG 10 V_SP1_Q6_M00196 TRANSFAC - 7831301 7831313 3.0E-06 AGTGGGCGGGGCG 13 V_AP2BETA_Q3_M01858 TRANSFAC - 7831480 7831495 5.0E-06 GCTGCCGCCTGCGGGG 16 V_ASCL2_03_M02737 TRANSFAC - 7831427 7831443 7.0E-06 TTTGGCAGCTGCGGCGG 17 V_GADP_01_M01258 TRANSFAC + 7831279 7831290 0.0E+00 CACTTCCGGCGC 12 V_NFE4_Q5_M02105 TRANSFAC + 7831056 7831067 5.0E-06 GTCCCTCGCCAG 12 V_GATA1_09_M02254 TRANSFAC - 7830166 7830176 5.0E-06 GGAGATAAGGA 11 V_SP4_Q5_M01273 TRANSFAC + 7831302 7831312 9.0E-06 GCCCCGCCCAC 11 V_OTX2_Q3_M01719 TRANSFAC - 7830194 7830206 7.0E-06 AGATGGATTAGAT 13 V_ELF1_Q6_M00746 TRANSFAC - 7830897 7830908 3.0E-06 GAAATAGGAAGT 12 V_ELF1_Q6_M00746 TRANSFAC + 7832278 7832289 8.0E-06 AAAGGAGGAAAA 12 V_MINI19_B_M00323 TRANSFAC + 7829935 7829955 1.0E-06 TCCAGCCACCATTCAGAGAGC 21 V_TAL1_01_M01591 TRANSFAC + 7830164 7830176 2.0E-06 TCTCCTTATCTCC 13 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 7831034 7831042 8.0E-06 GAGGGTGGG 9 V_R_01_M00273 TRANSFAC - 7831075 7831095 6.0E-06 GTGGTCTGTAAACGTGGTGCA 21 V_SRF_06_M02916 TRANSFAC + 7829916 7829932 4.0E-06 CATGAAAGAAAAAATGT 17 V_GATA6_04_M02757 TRANSFAC - 7830163 7830179 9.0E-06 TAGGGAGATAAGGAGAG 17 V_SP1_Q4_01_M00932 TRANSFAC - 7831270 7831282 5.0E-06 AGTGGGCGGGGGC 13 V_SP1_Q4_01_M00932 TRANSFAC - 7831301 7831313 1.0E-06 AGTGGGCGGGGCG 13 V_ATF_B_M00338 TRANSFAC + 7831330 7831341 3.0E-06 GTGACGTCTTTG 12 V_RNF96_01_M01199 TRANSFAC + 7831705 7831714 7.0E-06 GCCCGCAGCC 10 V_SOX14_03_M02798 TRANSFAC + 7830798 7830813 1.0E-06 GCAGATTATAATATGA 16 V_SOX14_03_M02798 TRANSFAC - 7830798 7830813 2.0E-06 TCATATTATAATCTGC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.