Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZNHIT3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9326 zinc finger, HIT-type containing 3 chr17 + 34837472 - 34842972 34842472 Transcription Factor Binding Sites   Download all TFBS in the ZNHIT3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Myc_MA0147.1 JASPAR + 34838919 34838928 7.0E-06 CGCACGTGGT 10 SOX2_HMG_full_dimeric_17_1 SELEX - 34838421 34838437 5.0E-06 TGACACTTGCATTTCTC 17 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 34842201 34842212 4.0E-06 AAAGAAAACAAT 12 IRX2_homeodomain_DBD_dimeric_12_1 SELEX + 34842292 34842303 3.0E-06 CTACATAACAAG 12 EBF1_EBF_full_dimeric_14_1 SELEX + 34841894 34841907 9.0E-06 GTTCCCAGGGGACA 14 EBF1_EBF_full_dimeric_14_1 SELEX - 34841894 34841907 8.0E-06 TGTCCCCTGGGAAC 14 POU3F4_POU_DBD_monomeric_11_1 SELEX + 34841773 34841783 8.0E-06 TGCAAAATTTA 11 NFYA_MA0060.1 JASPAR - 34842438 34842453 5.0E-06 GGGGACCAATCAGCGC 16 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX - 34842133 34842149 1.0E-05 AGGGACATTGGGGTTCA 17 SRY_MA0084.1 JASPAR - 34842201 34842209 9.0E-06 GAAAACAAT 9 CTCF_C2H2_full_monomeric_17_1 SELEX + 34839000 34839016 4.0E-06 AGCGCCCTCTGGCGGGA 17 Foxd3_MA0041.1 JASPAR + 34842200 34842211 5.0E-06 TATTGTTTTCTT 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 34841872 34841886 4.0E-06 TTAGAGTGAAAGTAG 15 DUXA_homeodomain_DBD_dimeric_13_1 SELEX + 34842316 34842328 0.0E+00 GTGATCTAATCAA 13 TP53_MA0106.1 JASPAR - 34842083 34842102 6.0E-06 AAGGACAAGTCCAGACATTG 20 IRF3_IRF_full_trimeric_21_1 SELEX + 34842452 34842472 7.0E-06 CCGTTTAGGAAACGGAAAAAG 21 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 34842203 34842215 8.0E-06 AAAAAAGAAAACA 13 IRX5_homeodomain_DBD_dimeric_12_1 SELEX + 34842292 34842303 2.0E-06 CTACATAACAAG 12 V_FOXP1_01_M00987 TRANSFAC + 34842193 34842212 6.0E-06 TTCCATGTATTGTTTTCTTT 20 V_HNF3B_01_M00131 TRANSFAC + 34842198 34842212 0.0E+00 TGTATTGTTTTCTTT 15 V_TCF3_01_M01594 TRANSFAC + 34842204 34842216 5.0E-06 GTTTTCTTTTTTA 13 V_EBF_Q6_M00977 TRANSFAC - 34841896 34841906 4.0E-06 GTCCCCTGGGA 11 V_DUXL_01_M01390 TRANSFAC + 34842317 34842333 2.0E-06 TGATCTAATCAAGGAAA 17 V_ATF5_01_M01295 TRANSFAC + 34841915 34841925 4.0E-06 CTTCTTCATTA 11 V_FOXD3_01_M00130 TRANSFAC + 34842200 34842211 5.0E-06 TATTGTTTTCTT 12 V_BCL6_01_M01183 TRANSFAC + 34842193 34842208 8.0E-06 TTCCATGTATTGTTTT 16 V_SOX5_01_M00042 TRANSFAC - 34842199 34842208 9.0E-06 AAAACAATAC 10 V_MAFB_03_M02879 TRANSFAC + 34841769 34841783 6.0E-06 AGAGTGCAAAATTTA 15 V_IRF_Q6_01_M00972 TRANSFAC - 34842205 34842215 6.0E-06 AAAAAAGAAAA 11 V_SRY_02_M00160 TRANSFAC - 34842198 34842209 1.0E-06 GAAAACAATACA 12 V_IRF2_Q6_M01882 TRANSFAC - 34842202 34842217 3.0E-06 GTAAAAAAGAAAACAA 16 V_HNF3_Q6_01_M01012 TRANSFAC + 34842198 34842215 1.0E-06 TGTATTGTTTTCTTTTTT 18 V_GABPA_04_M02858 TRANSFAC - 34842458 34842473 4.0E-06 CCTTTTTCCGTTTCCT 16 V_MYC_01_M02250 TRANSFAC + 34838919 34838928 7.0E-06 CGCACGTGGT 10 V_HELIOSA_02_M01004 TRANSFAC + 34842325 34842335 4.0E-06 TCAAGGAAAAC 11 V_FOXO1_02_M00474 TRANSFAC + 34842199 34842212 1.0E-06 GTATTGTTTTCTTT 14 V_SOX18_03_M02801 TRANSFAC + 34842197 34842212 5.0E-06 ATGTATTGTTTTCTTT 16 V_DUXBL_01_M02968 TRANSFAC + 34842317 34842333 2.0E-06 TGATCTAATCAAGGAAA 17 V_IRF3_06_M02871 TRANSFAC + 34842465 34842478 9.0E-06 GGAAAAAGGGGCGT 14 V_SPIB_01_M01204 TRANSFAC + 34842153 34842169 5.0E-06 AGATTCAGGAAGTCCCA 17 V_CTCF_01_M01200 TRANSFAC - 34838999 34839018 1.0E-05 CGTCCCGCCAGAGGGCGCTC 20 V_SOX9_B1_M00410 TRANSFAC - 34842197 34842210 9.0E-06 AGAAAACAATACAT 14 V_IRF7_01_M00453 TRANSFAC + 34842457 34842474 2.0E-06 TAGGAAACGGAAAAAGGG 18 V_MYOD_Q6_02_M02100 TRANSFAC + 34838653 34838661 4.0E-06 CAGCTGTCA 9 V_MTF1_06_M02882 TRANSFAC - 34842202 34842215 3.0E-06 AAAAAAGAAAACAA 14 V_E2_01_M00107 TRANSFAC - 34842064 34842079 6.0E-06 GAACCAGAATCGGTTG 16 V_NFYC_Q5_M02107 TRANSFAC - 34842438 34842451 2.0E-06 GGACCAATCAGCGC 14 V_FOXL1_02_M02857 TRANSFAC - 34842198 34842213 7.0E-06 AAAAGAAAACAATACA 16 V_FOXL1_04_M02753 TRANSFAC - 34842198 34842214 5.0E-06 AAAAAGAAAACAATACA 17 V_CPHX_01_M01478 TRANSFAC - 34842315 34842328 5.0E-06 TTGATTAGATCACA 14 V_CPHX_01_M01478 TRANSFAC + 34842316 34842329 1.0E-06 GTGATCTAATCAAG 14 V_SMAD3_03_M02794 TRANSFAC - 34842081 34842097 6.0E-06 CAAGTCCAGACATTGGG 17 V_NFY_01_M00287 TRANSFAC - 34842438 34842453 3.0E-06 GGGGACCAATCAGCGC 16 V_FOXO3_01_M00477 TRANSFAC + 34842199 34842212 1.0E-05 GTATTGTTTTCTTT 14 V_ASCL2_04_M02841 TRANSFAC + 34841861 34841876 4.0E-06 GTTTCCCCGTCCTACT 16 V_GZF1_01_M01069 TRANSFAC - 34842349 34842360 1.0E-05 TGCGCATCTATT 12 V_IRF1_Q6_01_M01881 TRANSFAC + 34842203 34842216 9.0E-06 TGTTTTCTTTTTTA 14 V_SOX8_03_M02808 TRANSFAC + 34842195 34842211 5.0E-06 CCATGTATTGTTTTCTT 17 V_SRF_06_M02916 TRANSFAC - 34842201 34842217 1.0E-06 GTAAAAAAGAAAACAAT 17 V_DR3_Q4_M00966 TRANSFAC + 34838469 34838489 9.0E-06 GCTCGCCCTTATCAACCTCCG 21 V_SRY_05_M02917 TRANSFAC - 34842196 34842212 1.0E-06 AAAGAAAACAATACATG 17 V_ARP1_01_M00155 TRANSFAC - 34838430 34838445 1.0E-05 CGCAGCTCTGACACTT 16 V_HNF4_01_M00134 TRANSFAC + 34841768 34841786 4.0E-06 TAGAGTGCAAAATTTAAGA 19 V_NFYA_Q5_M02106 TRANSFAC - 34842438 34842451 7.0E-06 GGACCAATCAGCGC 14 V_FOXK1_03_M02752 TRANSFAC - 34842198 34842214 7.0E-06 AAAAAGAAAACAATACA 17 V_NANOG_02_M01247 TRANSFAC - 34842194 34842213 9.0E-06 AAAAGAAAACAATACATGGA 20 V_NANOG_02_M01247 TRANSFAC - 34842199 34842218 1.0E-06 TGTAAAAAAGAAAACAATAC 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.