Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MS4A1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 931 membrane-spanning 4-domains, subfamily A, member 1 chr11 + 60218281 - 60223781 60223281 Transcription Factor Binding Sites   Download all TFBS in the MS4A1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Uncx_homeodomain_DBD_monomeric_8_1 SELEX + 60223109 60223116 9.0E-06 CTAATTAA 8 HSF2_HSF_DBD_trimeric_13_1 SELEX + 60223036 60223048 0.0E+00 TTCTAGAATCTTT 13 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX + 60223109 60223116 9.0E-06 CTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX + 60223109 60223116 5.0E-06 CTAATTAA 8 ALX3_homeodomain_full_monomeric_10_1 SELEX + 60223108 60223117 5.0E-06 TCTAATTAAG 10 TBR1_TBX_DBD_monomeric_10_1 SELEX + 60223213 60223222 7.0E-06 AAGTGTTAAA 10 NHLH1_MA0048.1 JASPAR + 60225317 60225328 5.0E-06 AAGCAGCTGCGG 12 NHLH1_MA0048.1 JASPAR - 60225317 60225328 2.0E-06 CCGCAGCTGCTT 12 HSF1_HSF_full_trimeric_13_1 SELEX + 60223036 60223048 4.0E-06 TTCTAGAATCTTT 13 Shox2_homeodomain_DBD_monomeric_8_1 SELEX + 60223109 60223116 5.0E-06 CTAATTAA 8 SOX9_HMG_full_dimeric_17_3 SELEX + 60225409 60225425 9.0E-06 AGTACATTTTAGTCATA 17 Alx1_homeodomain_DBD_monomeric_10_1 SELEX + 60223108 60223117 3.0E-06 TCTAATTAAG 10 Alx1_homeodomain_DBD_monomeric_10_1 SELEX - 60223108 60223117 8.0E-06 CTTAATTAGA 10 SOX7_HMG_full_dimeric_17_2 SELEX + 60225409 60225425 4.0E-06 AGTACATTTTAGTCATA 17 NKX6-2_homeodomain_full_monomeric_8_1 SELEX + 60223109 60223116 5.0E-06 CTAATTAA 8 PRRX2_homeodomain_full_monomeric_8_1 SELEX + 60223109 60223116 5.0E-06 CTAATTAA 8 ISX_homeodomain_DBD_dimeric_13_1 SELEX - 60223109 60223121 7.0E-06 CTACCTTAATTAG 13 LMX1B_homeodomain_full_monomeric_8_1 SELEX + 60223109 60223116 9.0E-06 CTAATTAA 8 IRF1_MA0050.1 JASPAR + 60223159 60223170 4.0E-06 AGAAGTGAAACC 12 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 60225265 60225280 1.0E-06 CTCCACCCACTCACTT 16 SHOX_homeodomain_DBD_monomeric_8_1 SELEX + 60223109 60223116 9.0E-06 CTAATTAA 8 HSF4_HSF_DBD_trimeric_13_1 SELEX + 60223036 60223048 5.0E-06 TTCTAGAATCTTT 13 PRRX1_homeodomain_full_monomeric_8_1 SELEX + 60223109 60223116 5.0E-06 CTAATTAA 8 FOXI1_MA0042.1 JASPAR - 60225147 60225158 1.0E-06 TTTTATTTGTTT 12 SRY_MA0084.1 JASPAR + 60225154 60225162 7.0E-06 TAAAACAAT 9 DLX6_homeodomain_DBD_monomeric_8_1 SELEX + 60223109 60223116 5.0E-06 CTAATTAA 8 MIXL1_homeodomain_full_monomeric_10_1 SELEX + 60223108 60223117 1.0E-05 TCTAATTAAG 10 MIXL1_homeodomain_full_monomeric_10_1 SELEX - 60223108 60223117 1.0E-05 CTTAATTAGA 10 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX + 60223109 60223116 5.0E-06 CTAATTAA 8 DLX3_homeodomain_DBD_monomeric_8_1 SELEX + 60223109 60223116 9.0E-06 CTAATTAA 8 LHX2_homeodomain_DBD_monomeric_10_1 SELEX + 60223108 60223117 9.0E-06 TCTAATTAAG 10 TBX2_TBX_full_monomeric_11_1 SELEX + 60223212 60223222 7.0E-06 TAAGTGTTAAA 11 Foxd3_MA0041.1 JASPAR - 60225147 60225158 2.0E-06 TTTTATTTGTTT 12 Foxd3_MA0041.1 JASPAR - 60225152 60225163 1.0E-06 GATTGTTTTATT 12 LHX9_homeodomain_DBD_monomeric_8_1 SELEX + 60223109 60223116 5.0E-06 CTAATTAA 8 FEV_MA0156.1 JASPAR - 60223265 60223272 1.0E-05 CAGGAAAT 8 SOX21_HMG_DBD_dimeric_16_1 SELEX + 60223204 60223219 3.0E-06 AGCTATGGTAAGTGTT 16 VDR_nuclearreceptor_full_dimeric_16_1 SELEX - 60223352 60223367 0.0E+00 GAGTTCAGTGGGTGCA 16 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX + 60223109 60223116 5.0E-06 CTAATTAA 8 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 60225147 60225159 8.0E-06 AAACAAATAAAAC 13 NHLH1_bHLH_full_dimeric_10_1 SELEX + 60225318 60225327 5.0E-06 AGCAGCTGCG 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 60225318 60225327 4.0E-06 CGCAGCTGCT 10 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX + 60223109 60223116 9.0E-06 CTAATTAA 8 V_AREB6_01_M00412 TRANSFAC - 60223413 60223425 1.0E-06 TCCTTACCTGAGT 13 V_BCL6_Q3_01_M02085 TRANSFAC + 60223153 60223162 9.0E-06 TTTTCAAGAA 10 V_NF1_Q6_01_M00806 TRANSFAC + 60225058 60225074 6.0E-06 CTGACCAACAGCCAAGA 17 V_FOXD3_01_M00130 TRANSFAC - 60225147 60225158 2.0E-06 TTTTATTTGTTT 12 V_FOXD3_01_M00130 TRANSFAC - 60225152 60225163 2.0E-06 GATTGTTTTATT 12 V_ETS_B_M00340 TRANSFAC - 60223261 60223274 0.0E+00 GACAGGAAATCAGT 14 V_HOXA13_02_M01297 TRANSFAC + 60225151 60225159 1.0E-06 AAATAAAAC 9 V_LBX2_01_M01401 TRANSFAC - 60223104 60223120 1.0E-06 TACCTTAATTAGAAGAA 17 V_DR4_Q2_M00965 TRANSFAC - 60225398 60225414 9.0E-06 TGTACTTCAGTGTCCCT 17 V_IRF_Q6_01_M00972 TRANSFAC + 60223159 60223169 3.0E-06 AGAAGTGAAAC 11 V_POU1F1_Q6_M00744 TRANSFAC - 60222840 60222849 5.0E-06 ATGTATATAT 10 V_HOXD13_01_M01404 TRANSFAC + 60225147 60225162 7.0E-06 AAACAAATAAAACAAT 16 V_PSX1_01_M01435 TRANSFAC - 60223104 60223120 4.0E-06 TACCTTAATTAGAAGAA 17 V_CDX_Q5_M00991 TRANSFAC + 60222118 60222135 4.0E-06 TATTCTTGAAGAAGTAAA 18 V_CART1_03_M01453 TRANSFAC - 60223104 60223120 4.0E-06 TACCTTAATTAGAAGAA 17 V_BCL6_02_M01185 TRANSFAC + 60223433 60223446 9.0E-06 TGCTTTCTTTAAAT 14 V_LHX61_01_M01314 TRANSFAC + 60223104 60223120 8.0E-06 TTCTTCTAATTAAGGTA 17 V_LHX61_01_M01314 TRANSFAC - 60223105 60223121 5.0E-06 CTACCTTAATTAGAAGA 17 V_ZFP105_03_M02827 TRANSFAC + 60225148 60225162 8.0E-06 AACAAATAAAACAAT 15 V_HOXB13_01_M01467 TRANSFAC + 60225147 60225162 9.0E-06 AAACAAATAAAACAAT 16 V_ARX_01_M01423 TRANSFAC + 60223104 60223120 9.0E-06 TTCTTCTAATTAAGGTA 17 V_ARX_01_M01423 TRANSFAC - 60223105 60223121 5.0E-06 CTACCTTAATTAGAAGA 17 V_HES1_Q2_M01009 TRANSFAC - 60225164 60225178 9.0E-06 AGGCCTCGTGTCTCA 15 V_AP1_Q6_01_M00925 TRANSFAC + 60223445 60223453 9.0E-06 ATGACTTAA 9 V_MAZ_Q6_01_M02023 TRANSFAC + 60225271 60225284 2.0E-06 GTGGGTGGAGAGGA 14 V_IRF_Q6_M00772 TRANSFAC - 60223159 60223173 4.0E-06 CCAGGTTTCACTTCT 15 V_PAX4_05_M01385 TRANSFAC - 60223104 60223120 8.0E-06 TACCTTAATTAGAAGAA 17 V_GSH2_01_M01326 TRANSFAC - 60223104 60223119 5.0E-06 ACCTTAATTAGAAGAA 16 V_ISRE_01_M00258 TRANSFAC - 60223157 60223171 3.0E-06 AGGTTTCACTTCTTG 15 V_EVI1_Q3_M02002 TRANSFAC + 60223046 60223054 6.0E-06 TTTCTTGTC 9 V_PROP1_02_M01320 TRANSFAC - 60223104 60223120 8.0E-06 TACCTTAATTAGAAGAA 17 V_ARX_02_M02945 TRANSFAC + 60223104 60223120 9.0E-06 TTCTTCTAATTAAGGTA 17 V_ARX_02_M02945 TRANSFAC - 60223105 60223121 5.0E-06 CTACCTTAATTAGAAGA 17 V_HOXD9_Q2_M01834 TRANSFAC + 60225149 60225158 8.0E-06 ACAAATAAAA 10 V_EN2_01_M01455 TRANSFAC - 60223104 60223120 5.0E-06 TACCTTAATTAGAAGAA 17 V_S8_01_M00099 TRANSFAC + 60223104 60223119 8.0E-06 TTCTTCTAATTAAGGT 16 V_EBNA1_01_M01745 TRANSFAC - 60223248 60223263 1.0E-05 AGTAGCTTCTGCTACC 16 V_STAT6_02_M00500 TRANSFAC + 60223264 60223271 1.0E-05 GATTTCCT 8 V_ETS1_B_M00339 TRANSFAC - 60223259 60223273 7.0E-06 ACAGGAAATCAGTAG 15 V_LHX61_02_M01422 TRANSFAC - 60223104 60223120 1.0E-05 TACCTTAATTAGAAGAA 17 V_LHX61_02_M01422 TRANSFAC + 60223105 60223121 4.0E-06 TCTTCTAATTAAGGTAG 17 V_EGR1_06_M02744 TRANSFAC - 60225266 60225279 8.0E-06 TCCACCCACTCACT 14 V_IRF1_Q6_01_M01881 TRANSFAC - 60223158 60223171 7.0E-06 AGGTTTCACTTCTT 14 V_ESX1_01_M01474 TRANSFAC + 60223104 60223120 3.0E-06 TTCTTCTAATTAAGGTA 17 V_ESX1_01_M01474 TRANSFAC - 60223105 60223121 6.0E-06 CTACCTTAATTAGAAGA 17 V_HFH3_01_M00289 TRANSFAC - 60225146 60225158 6.0E-06 TTTTATTTGTTTC 13 V_HSF2_02_M01244 TRANSFAC - 60223036 60223048 3.0E-06 AAAGATTCTAGAA 13 V_EFC_Q6_M00626 TRANSFAC - 60225249 60225262 7.0E-06 CAATGCTTGGCAAC 14 V_ALX3_01_M01355 TRANSFAC - 60223104 60223120 8.0E-06 TACCTTAATTAGAAGAA 17 V_ARP1_01_M00155 TRANSFAC + 60223385 60223400 1.0E-06 TCAGCCCTTGAGATTT 16 V_UF1H3BETA_Q6_M01068 TRANSFAC + 60225285 60225298 8.0E-06 GGTGGGGGAAGAGA 14 V_ALX3_02_M02943 TRANSFAC - 60223104 60223120 8.0E-06 TACCTTAATTAGAAGAA 17 V_FEV_01_M02269 TRANSFAC - 60223265 60223272 1.0E-05 CAGGAAAT 8 V_HOX13_02_M01452 TRANSFAC - 60223104 60223119 7.0E-06 ACCTTAATTAGAAGAA 16 V_HSF1_Q6_01_M02017 TRANSFAC - 60223035 60223048 8.0E-06 AAAGATTCTAGAAG 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.