Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

COQ10A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 93058 coenzyme Q10 homolog A (S. cerevisiae) chr12 + 56655641 - 56661566 56661066 Transcription Factor Binding Sites   Download all TFBS in the COQ10A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 56665086 56665104 5.0E-06 GAGCCACTAGAGGGCTCTG 19 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 56655711 56655724 6.0E-06 GAGGTCACAGTTCA 14 TBR1_TBX_DBD_monomeric_10_1 SELEX + 56660596 56660605 1.0E-06 AGGTGTGAAA 10 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 56660476 56660486 4.0E-06 GACACGCCCAC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 56660996 56661006 1.0E-05 GCCCCGCCCCC 11 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 56664924 56664935 2.0E-06 TCTATTTATAGA 12 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 56664924 56664935 0.0E+00 TCTATAAATAGA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX - 56664921 56664933 4.0E-06 TATAAATAGACAA 13 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 56655711 56655724 1.0E-06 GAGGTCACAGTTCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 56655711 56655724 4.0E-06 GAGGTCACAGTTCA 14 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 56661384 56661400 1.0E-06 GAGGGCAGCTAAGGACA 17 HINFP1_C2H2_full_dimeric_20_1 SELEX + 56661246 56661265 8.0E-06 GCGGGCGCCCTGGGGTCCCC 20 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 56655632 56655643 8.0E-06 AATTTGCTTACT 3 TBP_MA0108.2 JASPAR - 56664920 56664934 3.0E-06 CTATAAATAGACAAG 15 EWSR1-FLI1_MA0149.1 JASPAR - 56660630 56660647 0.0E+00 GGAAGGAAGGAAGGGGAC 18 EWSR1-FLI1_MA0149.1 JASPAR - 56660634 56660651 0.0E+00 GGAAGGAAGGAAGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 56660638 56660655 0.0E+00 GAGAGGAAGGAAGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 56660749 56660766 9.0E-06 GGACGGGAGCAAGGCGAG 18 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 56664924 56664935 3.0E-06 TCTATTTATAGA 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 56664924 56664935 0.0E+00 TCTATAAATAGA 12 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX - 56661397 56661414 1.0E-06 GAGTGCAAAAGGTCGAGG 18 MEF2B_MADS_full_dimeric_12_1 SELEX + 56664924 56664935 4.0E-06 TCTATTTATAGA 12 MEF2B_MADS_full_dimeric_12_1 SELEX - 56664924 56664935 0.0E+00 TCTATAAATAGA 12 EOMES_TBX_DBD_monomeric_13_1 SELEX + 56660595 56660607 4.0E-06 CAGGTGTGAAACT 13 MEF2A_MA0052.1 JASPAR + 56664925 56664934 0.0E+00 CTATTTATAG 10 MEF2A_MA0052.1 JASPAR - 56664925 56664934 6.0E-06 CTATAAATAG 10 MEF2A_MA0052.1 JASPAR - 56665057 56665066 9.0E-06 CTCTTTATAG 10 SP1_MA0079.2 JASPAR + 56660997 56661006 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 56661369 56661378 7.0E-06 CCCCGCCCCC 10 TBR1_TBX_full_monomeric_11_1 SELEX + 56660595 56660605 1.0E-06 CAGGTGTGAAA 11 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 56655784 56655793 9.0E-06 AGCAGCTGTC 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX + 56655711 56655725 7.0E-06 GAGGTCACAGTTCAG 15 SP4_C2H2_full_monomeric_17_1 SELEX + 56660473 56660489 7.0E-06 GTAGACACGCCCACGAA 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 56664855 56664871 5.0E-06 TTGGACACAGTGTCCCT 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 56664855 56664871 7.0E-06 AGGGACACTGTGTCCAA 17 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 56655711 56655724 2.0E-06 GAGGTCACAGTTCA 14 SP1_C2H2_DBD_monomeric_11_1 SELEX + 56661368 56661378 4.0E-06 ACCCCGCCCCC 11 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX - 56661399 56661414 8.0E-06 GAGTGCAAAAGGTCGA 16 NRL_bZIP_DBD_monomeric_11_1 SELEX - 56655633 56655643 5.0E-06 AATTTGCTTAC 3 TBX21_TBX_full_monomeric_10_1 SELEX + 56660595 56660604 6.0E-06 CAGGTGTGAA 10 TBX2_TBX_full_monomeric_11_1 SELEX + 56660595 56660605 2.0E-06 CAGGTGTGAAA 11 SRF_MADS_full_dimeric_16_1 SELEX + 56664994 56665009 6.0E-06 CTCCCATATATGTGAT 16 NR3C1_MA0113.1 JASPAR - 56664967 56664984 1.0E-06 CAGATGATTCTGTCCTGA 18 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX + 56655711 56655724 2.0E-06 GAGGTCACAGTTCA 14 RARG_nuclearreceptor_full_dimeric_16_1 SELEX - 56661399 56661414 9.0E-06 GAGTGCAAAAGGTCGA 16 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX + 56655711 56655724 2.0E-06 GAGGTCACAGTTCA 14 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 56664855 56664871 7.0E-06 TTGGACACAGTGTCCCT 17 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 56664855 56664871 7.0E-06 AGGGACACTGTGTCCAA 17 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 56660387 56660397 5.0E-06 AATGTATATAT 11 RXR_RAR_DR5_MA0159.1 JASPAR + 56661035 56661051 2.0E-06 AGGTGAGAGGGAGGTGA 17 V_GAF_Q6_M01209 TRANSFAC + 56655901 56655911 7.0E-06 CAGATTACCAT 11 V_CDX2_Q5_01_M01659 TRANSFAC - 56664925 56664935 5.0E-06 TCTATAAATAG 11 V_PLAGL1_04_M02890 TRANSFAC + 56660683 56660699 8.0E-06 ACGTGGGGGTACCGAGA 17 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 56655971 56655982 6.0E-06 ACATTTTAACAG 12 V_STAT_Q6_M00777 TRANSFAC - 56665074 56665086 3.0E-06 GGTACTTCTTGGA 13 V_SP1_Q6_01_M00931 TRANSFAC - 56660996 56661005 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 56661368 56661377 7.0E-06 GGGGCGGGGT 10 V_MEF2_02_M00231 TRANSFAC + 56664918 56664939 6.0E-06 CCCTTGTCTATTTATAGACTTT 22 V_MEF2_02_M00231 TRANSFAC - 56664920 56664941 1.0E-06 AAAAAGTCTATAAATAGACAAG 22 V_EOMES_03_M02747 TRANSFAC + 56660592 56660608 1.0E-06 CCACAGGTGTGAAACTA 17 V_TBR2_01_M01774 TRANSFAC + 56660596 56660604 3.0E-06 AGGTGTGAA 9 V_HNF4_Q6_M00967 TRANSFAC - 56655659 56655667 7.0E-06 AAGGTCCAA 9 V_EVI1_02_M00079 TRANSFAC + 56655832 56655842 7.0E-06 GGACAAGACAG 11 V_POU1F1_Q6_M00744 TRANSFAC - 56660387 56660396 5.0E-06 ATGTATATAT 10 V_AP2_Q6_01_M00915 TRANSFAC + 56660999 56661011 0.0E+00 CCGCCCCCAGGCC 13 V_SP1_03_M02281 TRANSFAC + 56660997 56661006 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 56661369 56661378 7.0E-06 CCCCGCCCCC 10 V_PPAR_DR1_Q2_M00763 TRANSFAC - 56655712 56655724 3.0E-06 TGAACTGTGACCT 13 V_SP1_02_M01303 TRANSFAC - 56661367 56661377 3.0E-06 GGGGCGGGGTG 11 V_HEN1_01_M00068 TRANSFAC + 56660923 56660944 6.0E-06 GCGGGTCCCAGCTGGGACGCGC 22 V_NR3C1_01_M02219 TRANSFAC - 56664967 56664984 1.0E-06 CAGATGATTCTGTCCTGA 18 V_MEF2A_Q6_M02024 TRANSFAC + 56664926 56664935 1.0E-06 TATTTATAGA 10 V_NFY_C_M00209 TRANSFAC - 56655752 56655765 5.0E-06 TCTGGTTGGTTAAA 14 V_GC_01_M00255 TRANSFAC - 56660994 56661007 1.0E-06 TGGGGGCGGGGCCG 14 V_HELIOSA_02_M01004 TRANSFAC - 56660396 56660406 7.0E-06 AATAGGATAAA 11 V_FOXA2_02_M02853 TRANSFAC - 56665023 56665037 0.0E+00 AAAAATAACAAGAGG 15 V_ZFP105_03_M02827 TRANSFAC - 56665024 56665038 1.0E-06 CAAAAATAACAAGAG 15 V_OCT1_03_M00137 TRANSFAC + 56655703 56655715 2.0E-06 GTGATAATGAGGT 13 V_TATA_01_M00252 TRANSFAC - 56664920 56664934 3.0E-06 CTATAAATAGACAAG 15 V_KROX_Q6_M00982 TRANSFAC + 56661370 56661383 1.0E-05 CCCGCCCCCAGCCC 14 V_RSRFC4_Q2_M00407 TRANSFAC - 56664921 56664937 0.0E+00 AGTCTATAAATAGACAA 17 V_RSRFC4_Q2_M00407 TRANSFAC + 56664922 56664938 1.0E-06 TGTCTATTTATAGACTT 17 V_RSRFC4_Q2_M00407 TRANSFAC + 56665054 56665070 9.0E-06 AAGCTATAAAGAGCAGG 17 V_AMEF2_Q6_M00403 TRANSFAC - 56664921 56664938 9.0E-06 AAGTCTATAAATAGACAA 18 V_SP1_Q6_M00196 TRANSFAC - 56660995 56661007 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 56661367 56661379 3.0E-06 TGGGGGCGGGGTG 13 V_NKX22_02_M01372 TRANSFAC + 56665193 56665209 8.0E-06 ATAAGCAATTGAGAATC 17 V_MEF2_03_M00232 TRANSFAC + 56664918 56664939 6.0E-06 CCCTTGTCTATTTATAGACTTT 22 V_MEF2_03_M00232 TRANSFAC - 56664920 56664941 0.0E+00 AAAAAGTCTATAAATAGACAAG 22 V_SREBP_Q6_M01168 TRANSFAC - 56661030 56661044 7.0E-06 CCTCTCACCTCATTG 15 V_ASCL2_03_M02737 TRANSFAC - 56661446 56661462 6.0E-06 CCCAGCACCTGCTGCAG 17 V_JUNDM2_04_M02876 TRANSFAC + 56665180 56665195 6.0E-06 TTGGATTAGTCACATA 16 V_IRF3_06_M02871 TRANSFAC - 56665147 56665160 7.0E-06 AGAGAAAGGAACAA 14 V_PPARG_03_M00528 TRANSFAC + 56655708 56655724 2.0E-06 AATGAGGTCACAGTTCA 17 V_SOX12_04_M02900 TRANSFAC - 56665149 56665164 5.0E-06 ACTGAGAGAAAGGAAC 16 V_MEF2_04_M00233 TRANSFAC - 56664920 56664941 0.0E+00 AAAAAGTCTATAAATAGACAAG 22 V_MEF2_04_M00233 TRANSFAC - 56665025 56665046 6.0E-06 GGAGGTCCCAAAAATAACAAGA 22 V_XFD2_01_M00268 TRANSFAC - 56664922 56664935 4.0E-06 TCTATAAATAGACA 14 V_RFX_Q6_M00975 TRANSFAC - 56660670 56660678 4.0E-06 CTGTTGCCA 9 V_MEF2_Q6_01_M00941 TRANSFAC + 56664923 56664934 1.0E-05 GTCTATTTATAG 12 V_MEF2_Q6_01_M00941 TRANSFAC + 56665028 56665039 5.0E-06 TGTTATTTTTGG 12 V_SP1_01_M00008 TRANSFAC - 56661368 56661377 3.0E-06 GGGGCGGGGT 10 V_LMO2COM_01_M00277 TRANSFAC + 56661449 56661460 9.0E-06 CAGCAGGTGCTG 12 V_CTCF_02_M01259 TRANSFAC - 56665088 56665107 3.0E-06 CCAGAGCCACTAGAGGGCTC 20 V_CTCF_01_M01200 TRANSFAC - 56665086 56665105 1.0E-06 AGAGCCACTAGAGGGCTCTG 20 V_IRF7_01_M00453 TRANSFAC + 56655842 56655859 4.0E-06 GTGGAATTCGAAAGAGTA 18 V_TFIII_Q6_M00706 TRANSFAC + 56661040 56661048 6.0E-06 AGAGGGAGG 9 V_SP4_Q5_M01273 TRANSFAC + 56660996 56661006 1.0E-06 GCCCCGCCCCC 11 V_MYOD_Q6_02_M02100 TRANSFAC + 56655786 56655794 8.0E-06 CAGCTGTCT 9 V_TBP_01_M00471 TRANSFAC - 56664926 56664933 4.0E-06 TATAAATA 8 V_POU6F1_02_M01462 TRANSFAC + 56655702 56655718 1.0E-06 AGTGATAATGAGGTCAC 17 V_MYOD_Q6_01_M00929 TRANSFAC + 56661446 56661463 2.0E-06 CTGCAGCAGGTGCTGGGG 18 V_DR1_Q3_M00762 TRANSFAC + 56655712 56655724 3.0E-06 AGGTCACAGTTCA 13 V_CAAT_C_M00200 TRANSFAC - 56655622 56655646 1.0E-06 GCCAATTTGCTTACTGTCCCCTACT 6 V_T3R_Q6_M00963 TRANSFAC + 56661382 56661390 7.0E-06 CCTGTCCTT 9 NR1H2_RXRA_MA0115.1 JASPAR + 56655710 56655726 8.0E-06 TGAGGTCACAGTTCAGT 17 V_PARP_Q3_M01211 TRANSFAC - 56661350 56661359 8.0E-06 TGAGAAAAAG 10 V_RSRFC4_01_M00026 TRANSFAC + 56664922 56664937 0.0E+00 TGTCTATTTATAGACT 16 V_RSRFC4_01_M00026 TRANSFAC - 56664922 56664937 1.0E-06 AGTCTATAAATAGACA 16 V_RSRFC4_01_M00026 TRANSFAC - 56665054 56665069 7.0E-06 CTGCTCTTTATAGCTT 16 V_T3RBETA_Q6_01_M02119 TRANSFAC - 56661383 56661399 0.0E+00 AGGGCAGCTAAGGACAG 17 V_ZFP281_01_M01597 TRANSFAC - 56660997 56661007 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 56661369 56661379 6.0E-06 TGGGGGCGGGG 11 V_TBX5_Q5_M01044 TRANSFAC - 56660595 56660604 5.0E-06 TTCACACCTG 10 V_RXR_RAR_01_M02272 TRANSFAC + 56661035 56661051 2.0E-06 AGGTGAGAGGGAGGTGA 17 V_DMRT2_01_M01147 TRANSFAC + 56665143 56665158 5.0E-06 TAGTTTGTTCCTTTCT 16 V_PUR1_Q4_M01721 TRANSFAC + 56661267 56661275 6.0E-06 GGGACAGTG 9 V_POU6F1_03_M01479 TRANSFAC + 56655702 56655718 3.0E-06 AGTGATAATGAGGTCAC 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 56660630 56660647 0.0E+00 GGAAGGAAGGAAGGGGAC 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 56660634 56660651 0.0E+00 GGAAGGAAGGAAGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 56660638 56660655 0.0E+00 GAGAGGAAGGAAGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 56660749 56660766 9.0E-06 GGACGGGAGCAAGGCGAG 18 V_FOXJ2_01_M00422 TRANSFAC - 56664921 56664938 4.0E-06 AAGTCTATAAATAGACAA 18 V_SIX6_08_M02897 TRANSFAC + 56660382 56660398 3.0E-06 CTTTCATATATACATTT 17 V_PPARG_02_M00515 TRANSFAC + 56655621 56655643 1.0E-05 TAGTAGGGGACAGTAAGCAAATT 3 V_PIT1_Q6_M00802 TRANSFAC + 56660382 56660399 9.0E-06 CTTTCATATATACATTTA 18 V_SP1_Q2_01_M00933 TRANSFAC + 56660997 56661006 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 56661369 56661378 4.0E-06 CCCCGCCCCC 10 V_RXRLXRB_01_M01198 TRANSFAC + 56655712 56655724 2.0E-06 AGGTCACAGTTCA 13 V_SP1_Q4_01_M00932 TRANSFAC - 56660995 56661007 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 56661367 56661379 9.0E-06 TGGGGGCGGGGTG 13 V_COUP_DR1_Q6_M00765 TRANSFAC - 56655712 56655724 3.0E-06 TGAACTGTGACCT 13 V_DEC_Q1_M00997 TRANSFAC + 56655882 56655894 6.0E-06 GCCCATCTGAAGG 13 V_SEF1_C_M00214 TRANSFAC + 56660690 56660708 3.0E-06 GGTACCGAGATCTGCGGGA 19 V_TR4_03_M01782 TRANSFAC + 56655712 56655724 9.0E-06 AGGTCACAGTTCA 13 V_PPARG_01_M00512 TRANSFAC + 56655708 56655728 5.0E-06 AATGAGGTCACAGTTCAGTTA 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.