Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CD19 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 930 CD19 molecule chr16 + 28938259 - 28943759 28943259 Transcription Factor Binding Sites   Download all TFBS in the CD19 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX - 28946875 28946885 3.0E-06 CATGACTCACC 11 SP8_C2H2_DBD_monomeric_12_1 SELEX + 28948109 28948120 3.0E-06 GCCACGCCCCCA 12 SP3_C2H2_DBD_monomeric_11_1 SELEX + 28947900 28947910 6.0E-06 CCCACACCCAC 11 SP3_C2H2_DBD_monomeric_11_1 SELEX + 28948109 28948119 3.0E-06 GCCACGCCCCC 11 SPIC_ETS_full_monomeric_14_1 SELEX + 28942222 28942235 5.0E-06 GCAAACAGGAAGTC 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 28948109 28948119 1.0E-06 GCCACGCCCCC 11 RARA_nuclearreceptor_full_dimeric_18_1 SELEX - 28943700 28943717 8.0E-06 TGGGGCCATCTGAGGTCC 18 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 28943054 28943070 4.0E-06 GAAAACAGAAATGAACA 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 28943064 28943080 9.0E-06 ATGAACAAATAAACACA 17 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 28948108 28948121 8.0E-06 AGCCACGCCCCCAG 14 FOXL1_forkhead_full_dimeric_13_1 SELEX + 28943067 28943079 5.0E-06 AACAAATAAACAC 13 EGR1_C2H2_full_monomeric_14_1 SELEX + 28943224 28943237 9.0E-06 GCCGCCCCCGCAGA 14 E2F7_E2F_DBD_dimeric_14_1 SELEX + 28947821 28947834 3.0E-06 TTCTCCCGCCAGAT 14 SPIB_ETS_DBD_monomeric_14_1 SELEX - 28947812 28947825 2.0E-06 GAGAAGAGGAAGTG 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 28943068 28943078 1.0E-06 ACAAATAAACA 11 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 28947896 28947907 1.0E-05 TCTCCCCACACC 12 FOXI1_MA0042.1 JASPAR - 28943070 28943081 1.0E-06 GTGTGTTTATTT 12 SP1_C2H2_DBD_monomeric_11_1 SELEX + 28948109 28948119 5.0E-06 GCCACGCCCCC 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 28943068 28943078 1.0E-06 ACAAATAAACA 11 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX - 28943690 28943702 9.0E-06 TCCCCTTGAGGCA 13 Foxd3_MA0041.1 JASPAR - 28943066 28943077 4.0E-06 GTTTATTTGTTC 12 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX - 28943690 28943702 5.0E-06 TCCCCTTGAGGCA 13 JDP2_bZIP_full_dimeric_9_1 SELEX - 28946876 28946884 7.0E-06 ATGACTCAC 9 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 28947896 28947906 3.0E-06 TCTCCCCACAC 11 SPI1_ETS_full_monomeric_14_1 SELEX - 28947812 28947825 4.0E-06 GAGAAGAGGAAGTG 14 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 28947896 28947907 7.0E-06 TCTCCCCACACC 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 28943062 28943074 6.0E-06 AAATGAACAAATA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 28943066 28943078 1.0E-06 GAACAAATAAACA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 28943070 28943082 2.0E-06 AAATAAACACACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 28943068 28943080 7.0E-06 ACAAATAAACACA 13 V_MYB_Q6_M00183 TRANSFAC + 28942155 28942164 4.0E-06 CTCAACTGGC 10 V_FOXP1_01_M00987 TRANSFAC - 28943056 28943075 6.0E-06 TTATTTGTTCATTTCTGTTT 20 V_FOXP1_01_M00987 TRANSFAC - 28943064 28943083 8.0E-06 TTGTGTGTTTATTTGTTCAT 20 V_FREAC7_01_M00293 TRANSFAC + 28943067 28943082 6.0E-06 AACAAATAAACACACA 16 V_ZFP187_03_M02830 TRANSFAC + 28943062 28943075 7.0E-06 AAATGAACAAATAA 14 V_FLI1_Q6_M01208 TRANSFAC + 28942227 28942237 1.0E-06 CAGGAAGTCAC 11 V_BACH2_01_M00490 TRANSFAC + 28946875 28946885 3.0E-06 GGTGAGTCATG 11 V_OBOX1_01_M01450 TRANSFAC + 28942049 28942065 7.0E-06 ATGAGGGGATTAGAGAG 17 V_SOX30_03_M02804 TRANSFAC + 28943063 28943078 9.0E-06 AATGAACAAATAAACA 16 V_FOXD3_01_M00130 TRANSFAC - 28943066 28943077 4.0E-06 GTTTATTTGTTC 12 V_ETS_B_M00340 TRANSFAC + 28942225 28942238 3.0E-06 AACAGGAAGTCACA 14 V_GABP_B_M00341 TRANSFAC - 28947810 28947821 6.0E-06 AGAGGAAGTGCA 12 V_IRF_Q6_01_M00972 TRANSFAC + 28943055 28943065 6.0E-06 AAAACAGAAAT 11 V_IRF2_Q6_M01882 TRANSFAC + 28943053 28943068 9.0E-06 AGAAAACAGAAATGAA 16 V_HNF3_Q6_01_M01012 TRANSFAC - 28943062 28943079 0.0E+00 GTGTTTATTTGTTCATTT 18 V_HNF3_Q6_01_M01012 TRANSFAC - 28943066 28943083 3.0E-06 TTGTGTGTTTATTTGTTC 18 V_GABPA_04_M02858 TRANSFAC + 28946914 28946929 3.0E-06 CCATCTTCCCCAGGAT 16 V_FOXJ1_03_M02750 TRANSFAC + 28943069 28943084 3.0E-06 CAAATAAACACACAAG 16 V_HFH4_01_M00742 TRANSFAC - 28943069 28943081 7.0E-06 GTGTGTTTATTTG 13 V_SP1_02_M01303 TRANSFAC + 28948042 28948052 3.0E-06 GGGGCGGGGAG 11 V_PU1_Q4_M01172 TRANSFAC + 28947806 28947824 0.0E+00 ACCGTGCACTTCCTCTTCT 19 V_LDSPOLYA_B_M00317 TRANSFAC + 28946836 28946851 1.0E-06 TGCCTGTGTTCCCTTG 16 V_PAX5_02_M00144 TRANSFAC + 28943173 28943200 0.0E+00 AGAATGGGGCCTGAGGCGTGACCACCGC 28 V_BACH1_01_M00495 TRANSFAC + 28946873 28946887 2.0E-06 GAGGTGAGTCATGTC 15 V_GC_01_M00255 TRANSFAC - 28948086 28948099 7.0E-06 TGGAGGCGGGGTCT 14 V_CRX_Q4_M00623 TRANSFAC - 28942052 28942064 4.0E-06 TCTCTAATCCCCT 13 V_SPI1_03_M02078 TRANSFAC - 28947812 28947821 1.0E-06 AGAGGAAGTG 10 V_NKX26_01_M01322 TRANSFAC - 28947765 28947780 4.0E-06 GGACCCACTCAAGATT 16 V_PAX9_B_M00329 TRANSFAC + 28943236 28943259 0.0E+00 GACACCCATGGTTGAGTGCCCTCC 24 V_EVI1_01_M00078 TRANSFAC - 28946818 28946833 5.0E-06 AGATCAGATAAGCCAA 16 V_EVI1_01_M00078 TRANSFAC - 28946823 28946838 7.0E-06 GCAGAAGATCAGATAA 16 V_HNF3_Q6_M00791 TRANSFAC + 28943064 28943076 0.0E+00 ATGAACAAATAAA 13 V_HNF3_Q6_M00791 TRANSFAC + 28943068 28943080 4.0E-06 ACAAATAAACACA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 28943064 28943074 3.0E-06 TATTTGTTCAT 11 V_EGR1_Q6_M01873 TRANSFAC - 28943225 28943234 4.0E-06 GCGGGGGCGG 10 V_PAX5_01_M00143 TRANSFAC + 28943234 28943261 8.0E-06 CAGACACCCATGGTTGAGTGCCCTCCAG 28 V_HBP1_03_M02762 TRANSFAC + 28942069 28942084 3.0E-06 TTGTTGAATGAAAGGC 16 V_SOX12_04_M02900 TRANSFAC - 28942297 28942312 1.0E-06 ACTCAGAAAAAGAATT 16 V_NFKAPPAB50_01_M00051 TRANSFAC + 28948047 28948056 8.0E-06 GGGGAGTCCC 10 V_SPIB_01_M01204 TRANSFAC + 28942222 28942238 2.0E-06 GCAAACAGGAAGTCACA 17 V_RREB1_01_M00257 TRANSFAC + 28947899 28947912 6.0E-06 CCCCACACCCACCT 14 V_TAXCREB_02_M00115 TRANSFAC + 28947843 28947857 2.0E-06 GTGACGCCTCCCCCA 15 V_CETS1P54_01_M00032 TRANSFAC + 28942226 28942235 9.0E-06 ACAGGAAGTC 10 V_SP1_01_M00008 TRANSFAC - 28948088 28948097 7.0E-06 GAGGCGGGGT 10 V_FOXM1_01_M00630 TRANSFAC + 28942085 28942093 4.0E-06 AGATTGAGT 9 V_ELK1_01_M00007 TRANSFAC + 28942223 28942238 1.0E-06 CAAACAGGAAGTCACA 16 V_ELK1_01_M00007 TRANSFAC - 28947809 28947824 2.0E-06 AGAAGAGGAAGTGCAC 16 V_GATA4_Q3_M00632 TRANSFAC + 28943053 28943064 7.0E-06 AGAAAACAGAAA 12 V_ELF1_Q6_M00746 TRANSFAC - 28947813 28947824 0.0E+00 AGAAGAGGAAGT 12 V_HFH8_01_M00294 TRANSFAC - 28943069 28943081 1.0E-06 GTGTGTTTATTTG 13 V_AP1_Q4_01_M00926 TRANSFAC + 28946877 28946884 1.0E-05 TGAGTCAT 8 V_LEF1_Q2_01_M01022 TRANSFAC + 28947836 28947845 8.0E-06 CTTCAAAGTG 10 V_GABPBETA_Q3_M01876 TRANSFAC - 28947811 28947821 2.0E-06 AGAGGAAGTGC 11 V_TAL1_01_M01591 TRANSFAC + 28947814 28947826 6.0E-06 CTTCCTCTTCTCC 13 V_PITX1_01_M01484 TRANSFAC + 28942049 28942065 3.0E-06 ATGAGGGGATTAGAGAG 17 V_FRA1_Q5_M01267 TRANSFAC + 28946877 28946884 1.0E-05 TGAGTCAT 8 V_SPIC_02_M02077 TRANSFAC - 28947812 28947821 3.0E-06 AGAGGAAGTG 10 V_FOX_Q2_M00809 TRANSFAC - 28943069 28943081 8.0E-06 GTGTGTTTATTTG 13 V_ETS1_B_M00339 TRANSFAC + 28942226 28942240 9.0E-06 ACAGGAAGTCACAGC 15 V_EGR1_06_M02744 TRANSFAC + 28943224 28943237 4.0E-06 GCCGCCCCCGCAGA 14 V_IRF1_Q6_01_M01881 TRANSFAC - 28943054 28943067 8.0E-06 TCATTTCTGTTTTC 14 V_HFH3_01_M00289 TRANSFAC - 28943069 28943081 2.0E-06 GTGTGTTTATTTG 13 V_FOXJ2_01_M00422 TRANSFAC + 28943062 28943079 6.0E-06 AAATGAACAAATAAACAC 18 V_FOXJ2_01_M00422 TRANSFAC + 28943066 28943083 1.0E-06 GAACAAATAAACACACAA 18 V_NFE2_Q6_M02104 TRANSFAC - 28946870 28946885 3.0E-06 CATGACTCACCTCTTT 16 V_EKLF_Q5_M01874 TRANSFAC + 28947901 28947910 9.0E-06 CCACACCCAC 10 V_GSC_01_M01428 TRANSFAC - 28942050 28942066 4.0E-06 TCTCTCTAATCCCCTCA 17 V_FOXO1_01_M00473 TRANSFAC + 28943071 28943080 7.0E-06 AATAAACACA 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 28947898 28947911 7.0E-06 GGTGGGTGTGGGGA 14 V_EVI1_03_M00080 TRANSFAC - 28946823 28946833 6.0E-06 AGATCAGATAA 11 V_PAX4_04_M00380 TRANSFAC + 28943060 28943089 9.0E-06 AGAAATGAACAAATAAACACACAAGATCAT 30 V_SPIB_03_M02076 TRANSFAC - 28947812 28947821 3.0E-06 AGAGGAAGTG 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.