Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CCDC64 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 92558 coiled-coil domain containing 64 chr12 + 120422647 - 120428147 120427647 Transcription Factor Binding Sites   Download all TFBS in the CCDC64 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX21_TBX_full_dimeric_16_1 SELEX + 120426648 120426663 4.0E-06 GGTGCGAGGCCACACC 16 SP8_C2H2_DBD_monomeric_12_1 SELEX - 120426750 120426761 3.0E-06 GCCACGCCCCCA 12 SP3_C2H2_DBD_monomeric_11_1 SELEX - 120426751 120426761 3.0E-06 GCCACGCCCCC 11 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 120428467 120428484 8.0E-06 GCAGTTAATCTCTAATCA 18 SPIC_ETS_full_monomeric_14_1 SELEX + 120428419 120428432 0.0E+00 GAAATGAGGAAGTC 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 120426571 120426581 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 120426751 120426761 1.0E-06 GCCACGCCCCC 11 NHLH1_MA0048.1 JASPAR - 120427453 120427464 1.0E-05 GCTCAGCTGCTC 12 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 120426749 120426762 5.0E-06 GGCCACGCCCCCAG 14 EWSR1-FLI1_MA0149.1 JASPAR + 120427033 120427050 4.0E-06 GGAAGGCAGGAAGGAGCT 18 EWSR1-FLI1_MA0149.1 JASPAR - 120427324 120427341 1.0E-06 GGGAGGAAGCGAGGAGGA 18 EWSR1-FLI1_MA0149.1 JASPAR - 120427328 120427345 1.0E-06 GGAGGGGAGGAAGCGAGG 18 SPIB_ETS_DBD_monomeric_14_1 SELEX + 120428419 120428432 0.0E+00 GAAATGAGGAAGTC 14 SP1_MA0079.2 JASPAR - 120426571 120426580 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 120427432 120427441 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR - 120427467 120427476 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 120427473 120427482 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 120427500 120427509 3.0E-06 CCCCTCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 120426677 120426693 9.0E-06 GTGGCCACGCCCTCAGC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 120426748 120426764 7.0E-06 GCGGCCACGCCCCCAGC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 120426956 120426972 1.0E-05 CTCGCCCCGCCCCTTGC 17 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 120426383 120426399 7.0E-06 TGCTCTCTAGGGCTCCC 17 NFATC1_NFAT_full_dimeric_15_1 SELEX + 120428631 120428645 4.0E-06 GTTCCATTGCAGAAA 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 120428631 120428645 2.0E-06 TTTCTGCAATGGAAC 15 SP1_C2H2_DBD_monomeric_11_1 SELEX - 120426607 120426617 1.0E-05 GCCCCGCCCAC 11 SP1_C2H2_DBD_monomeric_11_1 SELEX - 120426751 120426761 5.0E-06 GCCACGCCCCC 11 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 120426325 120426345 8.0E-06 ATGCTGATGACTCAGGGATAT 21 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 120426677 120426691 3.0E-06 GGCCACGCCCTCAGC 15 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 120426748 120426762 1.0E-05 GGCCACGCCCCCAGC 15 MGA_TBX_DBD_dimeric_18_1 SELEX - 120426647 120426664 6.0E-06 GGGTGTGGCCTCGCACCC 18 Stat3_MA0144.1 JASPAR - 120428545 120428554 6.0E-06 TGCCAGGAAG 10 GSC_homeodomain_full_monomeric_10_1 SELEX - 120428614 120428623 2.0E-06 CCTAATCCCT 10 MAFG_bZIP_full_dimeric_21_1 SELEX - 120426325 120426345 4.0E-06 ATGCTGATGACTCAGGGATAT 21 ZNF282_C2H2_DBD_monomeric_17_1 SELEX - 120428557 120428573 1.0E-06 GTTTCCCACAACTCTGA 17 Myf_MA0055.1 JASPAR + 120427098 120427109 4.0E-06 CAGCAGCAGCAG 12 Myf_MA0055.1 JASPAR + 120427185 120427196 7.0E-06 CGGCAACAGCAG 12 Myf_MA0055.1 JASPAR + 120427188 120427199 8.0E-06 CAACAGCAGCAG 12 Myf_MA0055.1 JASPAR + 120427191 120427202 4.0E-06 CAGCAGCAGCAG 12 Myf_MA0055.1 JASPAR + 120427194 120427205 4.0E-06 CAGCAGCAGCAG 12 Myf_MA0055.1 JASPAR + 120427265 120427276 8.0E-06 CGGCAGCAGCAG 12 Myf_MA0055.1 JASPAR + 120427268 120427279 4.0E-06 CAGCAGCAGCAG 12 Myf_MA0055.1 JASPAR + 120427271 120427282 4.0E-06 CAGCAGCAGCAG 12 VDR_nuclearreceptor_full_dimeric_16_1 SELEX + 120427151 120427166 5.0E-06 GGGGTCATGGAGTGCG 16 SPI1_ETS_full_monomeric_14_1 SELEX + 120428419 120428432 1.0E-06 GAAATGAGGAAGTC 14 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 120428469 120428483 9.0E-06 GATTAGAGATTAACT 15 OLIG3_bHLH_DBD_dimeric_10_1 SELEX + 120428444 120428453 8.0E-06 AAAATATGTT 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX - 120428444 120428453 6.0E-06 AACATATTTT 10 V_KLF15_Q2_M01714 TRANSFAC - 120426690 120426703 1.0E-06 GAGCTGGGGTGTGG 14 V_SPI1_01_M01203 TRANSFAC + 120428419 120428435 1.0E-06 GAAATGAGGAAGTCGGG 17 V_GEN_INI_B_M00315 TRANSFAC - 120428420 120428427 1.0E-05 CCTCATTT 8 V_OBOX5_05_M03066 TRANSFAC - 120428466 120428482 7.0E-06 ATTAGAGATTAACTGCT 17 V_BACH2_01_M00490 TRANSFAC + 120426330 120426340 7.0E-06 CCTGAGTCATC 11 V_NRSF_Q4_M01028 TRANSFAC + 120426284 120426302 6.0E-06 TTTCTCTCCGGGCTGCTGA 19 V_NRSF_Q4_M01028 TRANSFAC - 120427267 120427285 3.0E-06 CCGCTGCTGCTGCTGCTGC 19 V_NRSF_Q4_M01028 TRANSFAC - 120427273 120427291 1.0E-06 CCGCTGCCGCTGCTGCTGC 19 V_ZFX_01_M01593 TRANSFAC + 120427634 120427649 8.0E-06 GGCCGGGCCGCACCGC 16 V_MAFB_03_M02879 TRANSFAC + 120428634 120428648 7.0E-06 CCATTGCAGAAATCA 15 V_SP1_Q6_01_M00931 TRANSFAC + 120426572 120426581 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 120426960 120426969 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 120426992 120427001 4.0E-06 GGGGCGGGGC 10 V_GTF2IRD1_01_M01229 TRANSFAC + 120428615 120428623 7.0E-06 GGGATTAGG 9 V_SP1_03_M02281 TRANSFAC - 120426571 120426580 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 120427432 120427441 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC - 120427467 120427476 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 120427473 120427482 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 120427500 120427509 3.0E-06 CCCCTCCCCC 10 V_GKLF_02_M01588 TRANSFAC - 120426606 120426617 8.0E-06 GCCCCGCCCACC 12 V_NERF_Q2_M00531 TRANSFAC + 120427036 120427053 6.0E-06 AGGCAGGAAGGAGCTCGC 18 V_NERF_Q2_M00531 TRANSFAC + 120427200 120427217 3.0E-06 CAGCAGGAAGCGTCGCGG 18 V_PU1_Q4_M01172 TRANSFAC - 120428420 120428438 1.0E-06 CTTCCCGACTTCCTCATTT 19 V_CEBPB_01_M00109 TRANSFAC + 120428616 120428629 1.0E-06 GGATTAGGAAATGT 14 V_MEF2A_Q6_M02024 TRANSFAC - 120428440 120428449 7.0E-06 TATTTTAAAT 10 V_PPARGRXRA_01_M02262 TRANSFAC - 120426499 120426513 0.0E+00 CTGGGGCAAAGGGGA 15 RXRA_VDR_MA0074.1 JASPAR + 120427152 120427166 9.0E-06 GGGTCATGGAGTGCG 15 V_GC_01_M00255 TRANSFAC + 120426570 120426583 1.0E-06 TGGGGGCGGGGCCG 14 V_GC_01_M00255 TRANSFAC + 120426750 120426763 9.0E-06 TGGGGGCGTGGCCG 14 V_GC_01_M00255 TRANSFAC + 120426958 120426971 5.0E-06 AAGGGGCGGGGCGA 14 V_OBOX5_02_M01480 TRANSFAC - 120428466 120428482 7.0E-06 ATTAGAGATTAACTGCT 17 V_GEN_INI3_B_M00314 TRANSFAC - 120428420 120428427 1.0E-05 CCTCATTT 8 V_MYF_01_M01302 TRANSFAC + 120427098 120427109 4.0E-06 CAGCAGCAGCAG 12 V_MYF_01_M01302 TRANSFAC + 120427185 120427196 7.0E-06 CGGCAACAGCAG 12 V_MYF_01_M01302 TRANSFAC + 120427188 120427199 8.0E-06 CAACAGCAGCAG 12 V_MYF_01_M01302 TRANSFAC + 120427191 120427202 4.0E-06 CAGCAGCAGCAG 12 V_MYF_01_M01302 TRANSFAC + 120427194 120427205 4.0E-06 CAGCAGCAGCAG 12 V_MYF_01_M01302 TRANSFAC + 120427265 120427276 8.0E-06 CGGCAGCAGCAG 12 V_MYF_01_M01302 TRANSFAC + 120427268 120427279 4.0E-06 CAGCAGCAGCAG 12 V_MYF_01_M01302 TRANSFAC + 120427271 120427282 4.0E-06 CAGCAGCAGCAG 12 V_KROX_Q6_M00982 TRANSFAC - 120427468 120427481 4.0E-06 CCCTCCCCCGCCCC 14 V_KROX_Q6_M00982 TRANSFAC - 120427474 120427487 3.0E-06 CGCGCCCCCTCCCC 14 V_AMEF2_Q6_M00403 TRANSFAC - 120428587 120428604 2.0E-06 AAGGCTATATAAAGCTCC 18 V_AP1_Q6_01_M00925 TRANSFAC - 120426331 120426339 7.0E-06 ATGACTCAG 9 V_SP1_Q6_M00196 TRANSFAC + 120426570 120426582 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 120426606 120426618 3.0E-06 GGTGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 120426958 120426970 1.0E-06 AAGGGGCGGGGCG 13 V_MAZ_Q6_01_M02023 TRANSFAC + 120427500 120427513 3.0E-06 GGGGGAGGGGCGGG 14 V_MEF2_03_M00232 TRANSFAC + 120428584 120428605 1.0E-06 AAAGGAGCTTTATATAGCCTTC 22 V_NKX52_01_M01315 TRANSFAC + 120428434 120428450 1.0E-05 GGAAGCATTTAAAATAT 17 V_NFE4_Q5_M02105 TRANSFAC + 120426395 120426406 2.0E-06 CTCCCTCTCCTG 12 V_SP1SP3_Q4_M01219 TRANSFAC + 120427431 120427441 1.0E-05 CCCCCTCCTCC 11 V_PPARG_03_M00528 TRANSFAC - 120426499 120426515 9.0E-06 GTCTGGGGCAAAGGGGA 17 V_SPIB_01_M01204 TRANSFAC + 120428419 120428435 6.0E-06 GAAATGAGGAAGTCGGG 17 V_AP1_C_M00199 TRANSFAC - 120426331 120426339 6.0E-06 ATGACTCAG 9 V_MEF2_Q6_01_M00941 TRANSFAC - 120428591 120428602 6.0E-06 GGCTATATAAAG 12 V_CDC5_01_M00478 TRANSFAC + 120428439 120428450 1.0E-05 CATTTAAAATAT 12 V_STAT3_03_M01595 TRANSFAC - 120428541 120428556 5.0E-06 GCTGCCAGGAAGTTAA 16 V_ELF1_Q6_M00746 TRANSFAC + 120428420 120428431 3.0E-06 AAATGAGGAAGT 12 V_AP1_Q4_01_M00926 TRANSFAC + 120426332 120426339 1.0E-05 TGAGTCAT 8 V_TEF1_Q6_03_M01817 TRANSFAC + 120426484 120426492 3.0E-06 GAGGAATGT 9 V_GEN_INI2_B_M00313 TRANSFAC - 120428420 120428427 1.0E-05 CCTCATTT 8 V_FRA1_Q5_M01267 TRANSFAC + 120426332 120426339 1.0E-05 TGAGTCAT 8 V_SMAD_Q6_01_M00974 TRANSFAC - 120428404 120428414 7.0E-06 TATGCAGACAT 11 V_ZFP281_01_M01597 TRANSFAC + 120426570 120426580 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 120427426 120427436 5.0E-06 AGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 120427472 120427482 7.0E-06 CGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 120427499 120427509 7.0E-06 CGGGGGAGGGG 11 V_OCT1_06_M00162 TRANSFAC - 120428358 120428371 8.0E-06 CTATTTTAGATGCT 14 V_MYF6_03_M02781 TRANSFAC + 120426924 120426939 3.0E-06 GGCGAACAGGTGCCCG 16 V_ZFP281_04_M02831 TRANSFAC + 120427424 120427438 5.0E-06 ACCCCCACCCCCTCC 15 V_EWSR1FLI1_01_M02252 TRANSFAC + 120427033 120427050 4.0E-06 GGAAGGCAGGAAGGAGCT 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 120427324 120427341 1.0E-06 GGGAGGAAGCGAGGAGGA 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 120427328 120427345 1.0E-06 GGAGGGGAGGAAGCGAGG 18 V_GSC_01_M01428 TRANSFAC - 120428611 120428627 5.0E-06 ATTTCCTAATCCCTGAG 17 V_SP1_Q2_01_M00933 TRANSFAC - 120426571 120426580 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 120426959 120426968 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC - 120427467 120427476 4.0E-06 CCCCGCCCCC 10 V_MEF2A_05_M01301 TRANSFAC - 120428591 120428602 5.0E-06 GGCTATATAAAG 12 V_UF1H3BETA_Q6_M01068 TRANSFAC + 120427470 120427483 1.0E-06 GGCGGGGGAGGGGG 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 120427497 120427510 1.0E-06 CGCGGGGGAGGGGC 14 V_HMX3_02_M01413 TRANSFAC + 120428434 120428450 9.0E-06 GGAAGCATTTAAAATAT 17 V_SP1_Q4_01_M00932 TRANSFAC + 120426570 120426582 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 120426606 120426618 2.0E-06 GGTGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 120426958 120426970 1.0E-06 AAGGGGCGGGGCG 13 V_OBOX5_01_M01381 TRANSFAC - 120428466 120428482 6.0E-06 ATTAGAGATTAACTGCT 17 V_OTX1_01_M01366 TRANSFAC - 120428466 120428482 1.0E-05 ATTAGAGATTAACTGCT 17 V_BRCA_01_M01082 TRANSFAC - 120426532 120426539 1.0E-05 TTCTGTTG 8 V_CEBPG_Q6_01_M01869 TRANSFAC + 120428617 120428628 0.0E+00 GATTAGGAAATG 12 V_OBOX6_06_M03067 TRANSFAC + 120428466 120428482 6.0E-06 AGCAGTTAATCTCTAAT 17 V_VDRRXR_01_M01202 TRANSFAC + 120427152 120427166 9.0E-06 GGGTCATGGAGTGCG 15 PPARG_RXRA_MA0065.2 JASPAR - 120426499 120426513 0.0E+00 CTGGGGCAAAGGGGA 15 V_SPIB_03_M02076 TRANSFAC + 120428423 120428432 7.0E-06 TGAGGAAGTC 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.