Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

CXorf40A


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
91966 chromosome X open reading frame 40A chrX +148621065 - 148626565 148626065

Transcription Factor Binding Sites

 
Download all TFBS in the CXorf40A promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
PAX6_PAX_DBD_monomeric_19_1 SELEX + 148622443 148622461 2.0E-06 CTATATGCATGGCTGAGTA 19
SOX10_HMG_full_dimeric_16_1 SELEX + 148629876 148629891 2.0E-06 ACGAATTTGCAGTGTT 16
PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 148622575 148622586 3.0E-06 TGACAGGTGTTA 12
PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 148622832 148622843 1.0E-06 TGACAGGTGCCA 12
KLF16_C2H2_DBD_monomeric_11_1 SELEX + 148621759 148621769 1.0E-05 GCCCCGCCCCC 11
NHLH1_MA0048.1 JASPAR + 148621511 148621522 4.0E-06 CCGCAGCTGCTC 12
NHLH1_MA0048.1 JASPAR - 148621511 148621522 5.0E-06 GAGCAGCTGCGG 12
NHLH1_MA0048.1 JASPAR + 148621834 148621845 1.0E-06 ACGCAGCTGCTT 12
NHLH1_MA0048.1 JASPAR - 148621834 148621845 2.0E-06 AAGCAGCTGCGT 12
SOX9_HMG_full_dimeric_16_1 SELEX + 148629876 148629891 1.0E-06 ACGAATTTGCAGTGTT 16
TBX5_TBX_DBD_dimeric_20_1 SELEX + 148623253 148623272 8.0E-06 AAGTGTCATTTTTCTCCCTT 20
TBX5_TBX_DBD_dimeric_20_1 SELEX - 148623253 148623272 2.0E-06 AAGGGAGAAAAATGACACTT 20
SOX8_HMG_DBD_dimeric_16_1 SELEX + 148629876 148629891 1.0E-06 ACGAATTTGCAGTGTT 16
ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 148621107 148621118 3.0E-06 TCGTTTCCCACA 12
EWSR1-FLI1_MA0149.1 JASPAR - 148622240 148622257 3.0E-06 GAACGGGAGGGAGGAAGA 18
GATA5_GATA_DBD_monomeric_8_1 SELEX - 148622041 148622048 7.0E-06 AGATAAGA 8
Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 148622575 148622586 1.0E-06 TGACAGGTGTTA 12
Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 148622832 148622843 1.0E-06 TGACAGGTGCCA 12
TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 148622575 148622586 3.0E-06 TGACAGGTGTTA 12
TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 148622832 148622843 1.0E-06 TGACAGGTGCCA 12
GATA4_GATA_DBD_monomeric_8_1 SELEX - 148622041 148622048 7.0E-06 AGATAAGA 8
SPIB_ETS_DBD_monomeric_14_1 SELEX + 148622550 148622563 8.0E-06 TGAAAGCGGAAGAG 14
Klf4_MA0039.2 JASPAR - 148621119 148621128 1.0E-05 AGGGTGGGGC 10
IRF1_MA0050.1 JASPAR - 148623254 148623265 1.0E-05 AAAAATGACACT 12
Meis3_MEIS_DBD_dimeric_12_1 SELEX - 148622575 148622586 2.0E-06 TGACAGGTGTTA 12
Meis3_MEIS_DBD_dimeric_12_1 SELEX + 148622832 148622843 1.0E-06 TGACAGGTGCCA 12
FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 148622427 148622440 6.0E-06 TCATAATGTTTGCT 14
SP1_MA0079.2 JASPAR + 148621611 148621620 3.0E-06 CCCCTCCCCC 10
SP1_MA0079.2 JASPAR + 148621760 148621769 7.0E-06 CCCCGCCCCC 10
SP1_MA0079.2 JASPAR + 148621852 148621861 7.0E-06 CCCCGCCCCC 10
SP1_MA0079.2 JASPAR + 148622099 148622108 3.0E-06 CCCCTCCCCC 10
Gfi_MA0038.1 JASPAR - 148621871 148621880 7.0E-06 GAAATCACTG 10
SOX14_HMG_DBD_dimeric_13_1 SELEX - 148623204 148623216 1.0E-05 TAAATCCCATTGT 13
znf143_MA0088.1 JASPAR + 148621773 148621792 9.0E-06 CCTTCCCCAGCATTCTCAGC 20
SP4_C2H2_full_monomeric_17_1 SELEX + 148621602 148621618 7.0E-06 TCAGCCCCGCCCCTCCC 17
SP4_C2H2_full_monomeric_17_1 SELEX + 148621756 148621772 1.0E-06 AAAGCCCCGCCCCCAAA 17
SP4_C2H2_full_monomeric_17_1 SELEX + 148621848 148621864 4.0E-06 AAAACCCCGCCCCCAGC 17
MGA_TBX_DBD_dimeric_18_2 SELEX - 148623254 148623271 9.0E-06 AGGGAGAAAAATGACACT 18
TBX4_TBX_DBD_dimeric_20_1 SELEX - 148623253 148623272 2.0E-06 AAGGGAGAAAAATGACACTT 20
SP1_C2H2_DBD_monomeric_11_1 SELEX + 148621851 148621861 4.0E-06 ACCCCGCCCCC 11
SOX7_HMG_full_dimeric_16_1 SELEX + 148629876 148629891 7.0E-06 ACGAATTTGCAGTGTT 16
Gata1_MA0035.2 JASPAR - 148622040 148622050 8.0E-06 TGAGATAAGAG 11
GATA3_GATA_full_monomeric_8_1 SELEX - 148622041 148622048 7.0E-06 AGATAAGA 8
ELK1_MA0028.1 JASPAR - 148622267 148622276 5.0E-06 GAACCGGAAG 10
ID4_bHLH_DBD_dimeric_10_1 SELEX + 148622576 148622585 5.0E-06 AACACCTGTC 10
TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 148622575 148622586 2.0E-06 TGACAGGTGTTA 12
TGIF2LX_MEIS_full_dimeric_12_1 SELEX + 148622832 148622843 3.0E-06 TGACAGGTGCCA 12
SPDEF_ETS_full_putative-multimer_16_1 SELEX - 148622259 148622274 5.0E-06 ACCGGAAGGAGGAAAA 16
SOX21_HMG_DBD_dimeric_16_1 SELEX + 148629876 148629891 2.0E-06 ACGAATTTGCAGTGTT 16
FOXI1_forkhead_full_dimeric_17_1 SELEX - 148622432 148622448 3.0E-06 ATATAGACAGCAAACAT 17
Meis2_MEIS_DBD_dimeric_12_1 SELEX - 148622575 148622586 1.0E-06 TGACAGGTGTTA 12
Meis2_MEIS_DBD_dimeric_12_1 SELEX + 148622832 148622843 1.0E-06 TGACAGGTGCCA 12
NR3C1_MA0113.1 JASPAR - 148623478 148623495 5.0E-06 AAGAAGGTCATGTACTTA 18
SPI1_ETS_full_monomeric_14_1 SELEX + 148622550 148622563 8.0E-06 TGAAAGCGGAAGAG 14
THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX + 148623485 148623503 5.0E-06 ATGACCTTCTTAGGGCCAT 19
THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX - 148623485 148623503 1.0E-06 ATGGCCCTAAGAAGGTCAT 19
PLAG1_MA0163.1 JASPAR - 148621793 148621806 3.0E-06 GGGGCTCTGGGGGG 14
NHLH1_bHLH_full_dimeric_10_1 SELEX + 148621512 148621521 4.0E-06 CGCAGCTGCT 10
NHLH1_bHLH_full_dimeric_10_1 SELEX - 148621512 148621521 5.0E-06 AGCAGCTGCG 10
NHLH1_bHLH_full_dimeric_10_1 SELEX + 148621835 148621844 4.0E-06 CGCAGCTGCT 10
NHLH1_bHLH_full_dimeric_10_1 SELEX - 148621835 148621844 5.0E-06 AGCAGCTGCG 10
TBX1_TBX_DBD_dimeric_20_1 SELEX + 148622483 148622502 1.0E-06 TGGTGTGCATACATGCGTGA 20
TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 148622575 148622586 2.0E-06 TGACAGGTGTTA 12
TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 148622832 148622843 3.0E-06 TGACAGGTGCCA 12
V_KLF15_Q2_M01714 TRANSFAC - 148622029 148622042 2.0E-06 GAGGCGGGGTGTGG 14
V_E2A_Q6_01_M02088 TRANSFAC + 148621908 148621920 5.0E-06 GGACACCTGCCTC 13
V_STAT3_01_M00225 TRANSFAC - 148622593 148622613 8.0E-06 CGCTAACTCCGGGAAACCAGT 21
V_ELK1_04_M01165 TRANSFAC - 148622265 148622275 1.0E-05 AACCGGAAGGA 11
V_PREP1_01_M01459 TRANSFAC + 148622575 148622590 4.0E-06 TAACACCTGTCACTGG 16
V_MYOD_Q6_M00184 TRANSFAC + 148622576 148622585 3.0E-06 AACACCTGTC 10
V_GATA2_02_M00348 TRANSFAC - 148622041 148622050 8.0E-06 TGAGATAAGA 10
V_RORA1_01_M00156 TRANSFAC - 148623485 148623497 1.0E-05 CTAAGAAGGTCAT 13
V_SP1_Q6_01_M00931 TRANSFAC - 148621311 148621320 4.0E-06 GGGGCGGGGC 10
V_SP1_Q6_01_M00931 TRANSFAC - 148621605 148621614 4.0E-06 GGGGCGGGGC 10
V_SP1_Q6_01_M00931 TRANSFAC - 148621625 148621634 4.0E-06 GGGGCGGGGC 10
V_SP1_Q6_01_M00931 TRANSFAC - 148621696 148621705 4.0E-06 GGGGCGGGGC 10
V_SP1_Q6_01_M00931 TRANSFAC - 148621759 148621768 4.0E-06 GGGGCGGGGC 10
V_SP1_Q6_01_M00931 TRANSFAC - 148621851 148621860 7.0E-06 GGGGCGGGGT 10
V_GABPA_04_M02858 TRANSFAC - 148622526 148622541 5.0E-06 CCGTCATCCCTTTCAC 16
V_SP1_03_M02281 TRANSFAC + 148621611 148621620 3.0E-06 CCCCTCCCCC 10
V_SP1_03_M02281 TRANSFAC + 148621760 148621769 7.0E-06 CCCCGCCCCC 10
V_SP1_03_M02281 TRANSFAC + 148621852 148621861 7.0E-06 CCCCGCCCCC 10
V_SP1_03_M02281 TRANSFAC + 148622099 148622108 3.0E-06 CCCCTCCCCC 10
V_GKLF_02_M01588 TRANSFAC + 148621119 148621130 3.0E-06 GCCCCACCCTGC 12
V_GKLF_02_M01588 TRANSFAC + 148621347 148621358 8.0E-06 GCCCCGCCCTGC 12
V_GKLF_02_M01588 TRANSFAC + 148621542 148621553 8.0E-06 GCCCCGCCCTGC 12
V_NERF_Q2_M00531 TRANSFAC - 148621072 148621089 5.0E-06 CAGCAGGAACTGGGTTAG 18
V_E2A_Q2_M00804 TRANSFAC + 148622577 148622590 8.0E-06 ACACCTGTCACTGG 14
V_PU1_Q4_M01172 TRANSFAC + 148622252 148622270 9.0E-06 CCGTTCCTTTTCCTCCTTC 19
V_NR3C1_01_M02219 TRANSFAC - 148623478 148623495 5.0E-06 AAGAAGGTCATGTACTTA 18
V_LDSPOLYA_B_M00317 TRANSFAC + 148622860 148622875 4.0E-06 AGCCTGTGTGCTCAGC 16
V_HMBOX1_01_M01456 TRANSFAC - 148623499 148623515 3.0E-06 CAAAGCTGGTTAATGGC 17
V_GC_01_M00255 TRANSFAC - 148621090 148621103 4.0E-06 TGGGGGTGGAGCTG 14
V_GC_01_M00255 TRANSFAC - 148621151 148621164 2.0E-06 AGGAGGCGGAGCTG 14
V_GC_01_M00255 TRANSFAC - 148621309 148621322 1.0E-06 ATGGGGCGGGGCTG 14
V_GC_01_M00255 TRANSFAC - 148621603 148621616 1.0E-06 GAGGGGCGGGGCTG 14
V_GC_01_M00255 TRANSFAC - 148621657 148621670 8.0E-06 CGAGGGCGGGGCTT 14
V_GC_01_M00255 TRANSFAC - 148621694 148621707 9.0E-06 GTGGGGCGGGGCTG 14
V_GC_01_M00255 TRANSFAC - 148621757 148621770 0.0E+00 TGGGGGCGGGGCTT 14
V_GC_01_M00255 TRANSFAC - 148621849 148621862 0.0E+00 TGGGGGCGGGGTTT 14
V_GC_01_M00255 TRANSFAC - 148622031 148622044 8.0E-06 AAGAGGCGGGGTGT 14
V_GC_01_M00255 TRANSFAC - 148622049 148622062 2.0E-06 TGAGGGCGGGGCTG 14
V_GC_01_M00255 TRANSFAC - 148622096 148622109 5.0E-06 TGGGGGAGGGGCCG 14
V_GC_01_M00255 TRANSFAC - 148622128 148622141 1.0E-06 TGGAGGCGGGGCTG 14
V_MEIS2_01_M01488 TRANSFAC + 148622575 148622590 6.0E-06 TAACACCTGTCACTGG 16
V_PR_Q2_M00960 TRANSFAC - 148622739 148622748 1.0E-06 GAAAGAACAG 10
V_E12_Q6_M00693 TRANSFAC + 148622833 148622843 7.0E-06 GACAGGTGCCA 11
V_KROX_Q6_M00982 TRANSFAC + 148621761 148621774 4.0E-06 CCCGCCCCCAAACC 14
V_KROX_Q6_M00982 TRANSFAC + 148621853 148621866 1.0E-05 CCCGCCCCCAGCCC 14
V_KROX_Q6_M00982 TRANSFAC + 148622132 148622145 3.0E-06 CCCGCCTCCACCCC 14
V_ZBP89_Q4_M01816 TRANSFAC + 148621241 148621250 2.0E-06 TCCTCCCCCA 10
V_ZBP89_Q4_M01816 TRANSFAC + 148622100 148622109 4.0E-06 CCCTCCCCCA 10
V_SP1_Q6_M00196 TRANSFAC - 148621310 148621322 9.0E-06 ATGGGGCGGGGCT 13
V_SP1_Q6_M00196 TRANSFAC - 148621604 148621616 2.0E-06 GAGGGGCGGGGCT 13
V_SP1_Q6_M00196 TRANSFAC - 148621609 148621621 7.0E-06 GGGGGGAGGGGCG 13
V_SP1_Q6_M00196 TRANSFAC - 148621758 148621770 1.0E-06 TGGGGGCGGGGCT 13
V_SP1_Q6_M00196 TRANSFAC - 148621850 148621862 2.0E-06 TGGGGGCGGGGTT 13
V_SP1_Q6_M00196 TRANSFAC - 148622097 148622109 7.0E-06 TGGGGGAGGGGCC 13
V_E47_02_M00071 TRANSFAC - 148622573 148622588 4.0E-06 AGTGACAGGTGTTAGC 16
V_MAZ_Q6_01_M02023 TRANSFAC - 148621607 148621620 3.0E-06 GGGGGAGGGGCGGG 14
V_MAZ_Q6_01_M02023 TRANSFAC - 148621887 148621900 7.0E-06 GAAGGAGGGAGGGG 14
V_IRC900814_04_M02870 TRANSFAC - 148629872 148629887 3.0E-06 CTGCAAATTCGTGAAG 16
V_ASCL2_03_M02737 TRANSFAC + 148621509 148621525 4.0E-06 TCCCGCAGCTGCTCCTC 17
V_NFE4_Q5_M02105 TRANSFAC + 148621672 148621683 7.0E-06 CCCCCTCCCCAG 12
V_NFE4_Q5_M02105 TRANSFAC + 148622142 148622153 7.0E-06 CCCCCTCCCCAG 12
V_GATA1_09_M02254 TRANSFAC - 148622040 148622050 8.0E-06 TGAGATAAGAG 11
V_PAX8_01_M00717 TRANSFAC + 148622490 148622504 3.0E-06 CATACATGCGTGATT 15
V_KLF7_03_M02773 TRANSFAC + 148621602 148621617 6.0E-06 TCAGCCCCGCCCCTCC 16
V_KLF7_03_M02773 TRANSFAC + 148621848 148621863 6.0E-06 AAAACCCCGCCCCCAG 16
V_KLF7_03_M02773 TRANSFAC + 148622048 148622063 2.0E-06 TCAGCCCCGCCCTCAA 16
V_STAF_02_M00264 TRANSFAC - 148622526 148622546 4.0E-06 AGCTCCCGTCATCCCTTTCAC 21
V_POU6F1_01_M00465 TRANSFAC - 148622429 148622439 1.0E-05 GCAAACATTAT 11
V_SP1_01_M00008 TRANSFAC - 148621851 148621860 3.0E-06 GGGGCGGGGT 10
V_SP1_01_M00008 TRANSFAC - 148622033 148622042 7.0E-06 GAGGCGGGGT 10
V_SP4_Q5_M01273 TRANSFAC + 148621759 148621769 1.0E-06 GCCCCGCCCCC 11
V_SP4_Q5_M01273 TRANSFAC + 148622098 148622108 5.0E-06 GCCCCTCCCCC 11
V_HBP1_04_M02866 TRANSFAC - 148623199 148623215 2.0E-06 AAATCCCATTGTCCTCA 17
V_ZIC2_05_M02940 TRANSFAC - 148627260 148627274 5.0E-06 CTGCTCAGCAGGGGA 15
V_HIF1_Q3_M00797 TRANSFAC + 148622472 148622485 2.0E-06 GCGTACGTGCGTGG 14
V_PKNOX2_01_M01411 TRANSFAC + 148622575 148622590 2.0E-06 TAACACCTGTCACTGG 16
V_SIRT6_01_M01797 TRANSFAC - 148622041 148622048 7.0E-06 AGATAAGA 8
V_GATA3_02_M00350 TRANSFAC - 148622041 148622050 5.0E-06 TGAGATAAGA 10
V_MEIS1_01_M00419 TRANSFAC - 148622578 148622589 2.0E-06 CAGTGACAGGTG 12
V_E47_01_M00002 TRANSFAC - 148621906 148621920 1.0E-06 GAGGCAGGTGTCCGC 15
V_HSF_Q6_M00641 TRANSFAC + 148621952 148621964 1.0E-05 TTCCTGCAGCTTC 13
V_ZFP281_04_M02831 TRANSFAC + 148621609 148621623 3.0E-06 CGCCCCTCCCCCCCC 15
V_GATA2_03_M00349 TRANSFAC - 148622041 148622050 3.0E-06 TGAGATAAGA 10
V_EWSR1FLI1_01_M02252 TRANSFAC - 148622240 148622257 3.0E-06 GAACGGGAGGGAGGAAGA 18
V_FOXJ2_01_M00422 TRANSFAC - 148622428 148622445 1.0E-05 TAGACAGCAAACATTATG 18
V_IPF1_Q4_01_M01013 TRANSFAC + 148629851 148629865 4.0E-06 TGGGCCATTAGTGGC 15
V_EKLF_Q5_M01874 TRANSFAC + 148621120 148621129 9.0E-06 CCCCACCCTG 10
V_IRF1_01_M00062 TRANSFAC - 148623254 148623266 2.0E-06 GAAAAATGACACT 13
V_SP1_Q2_01_M00933 TRANSFAC + 148621606 148621615 7.0E-06 CCCCGCCCCT 10
V_SP1_Q2_01_M00933 TRANSFAC + 148621760 148621769 4.0E-06 CCCCGCCCCC 10
V_SP1_Q2_01_M00933 TRANSFAC + 148621852 148621861 4.0E-06 CCCCGCCCCC 10
V_HIF1_Q5_M00466 TRANSFAC + 148622473 148622484 4.0E-06 CGTACGTGCGTG 12
V_UF1H3BETA_Q6_M01068 TRANSFAC - 148621239 148621252 1.0E-06 GGTGGGGGAGGAGC 14
V_UF1H3BETA_Q6_M01068 TRANSFAC - 148621610 148621623 1.0E-06 GGGGGGGGAGGGGC 14
V_UF1H3BETA_Q6_M01068 TRANSFAC - 148621759 148621772 8.0E-06 TTTGGGGGCGGGGC 14
V_UF1H3BETA_Q6_M01068 TRANSFAC - 148622098 148622111 1.0E-06 GCTGGGGGAGGGGC 14
V_SP1_Q4_01_M00932 TRANSFAC - 148621604 148621616 3.0E-06 GAGGGGCGGGGCT 13
V_SP1_Q4_01_M00932 TRANSFAC - 148621609 148621621 9.0E-06 GGGGGGAGGGGCG 13
V_SP1_Q4_01_M00932 TRANSFAC - 148621758 148621770 2.0E-06 TGGGGGCGGGGCT 13
V_SP1_Q4_01_M00932 TRANSFAC - 148621850 148621862 6.0E-06 TGGGGGCGGGGTT 13
V_SP1_Q4_01_M00932 TRANSFAC - 148622097 148622109 8.0E-06 TGGGGGAGGGGCC 13
V_GFI1_Q6_01_M02010 TRANSFAC + 148621871 148621880 5.0E-06 CAGTGATTTC 10
V_ELK1_03_M01163 TRANSFAC - 148622265 148622275 1.0E-05 AACCGGAAGGA 11
V_RNF96_01_M01199 TRANSFAC + 148621718 148621727 7.0E-06 GCCCGCAGCC 10
V_AR_Q2_M00447 TRANSFAC - 148623480 148623494 1.0E-06 AGAAGGTCATGTACT 15
V_ZIC1_05_M02939 TRANSFAC - 148627260 148627274 9.0E-06 CTGCTCAGCAGGGGA 15
V_TCF11_01_M00285 TRANSFAC + 148623257 148623269 8.0E-06 GTCATTTTTCTCC 13
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL