Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

ISX


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSSMotifs
91464 intestine-specific homeobox chr22 +35457129 - 35462629 35462129 ISX_homeodomain_DBD_dimeric_13_1
ISX_homeodomain_full_monomeric_8_1
V_ISX_01_M01331

Transcription Factor Binding Sites

 
Download all TFBS in the ISX promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
Foxa2_MA0047.2 JASPAR - 35460734 35460745 6.0E-06 TGTTGACTTTTG 12
TBX1_TBX_DBD_dimeric_20_2 SELEX + 35460925 35460944 0.0E+00 TTCTCACTCATAGGTGGGAG 20
TBX1_TBX_DBD_dimeric_20_2 SELEX - 35460925 35460944 6.0E-06 CTCCCACCTATGAGTGAGAA 20
SOX10_HMG_full_dimeric_16_1 SELEX + 35466673 35466688 6.0E-06 AACAAGATGCAGTGAC 16
SOX9_HMG_full_dimeric_16_1 SELEX + 35466673 35466688 3.0E-06 AACAAGATGCAGTGAC 16
FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 35460736 35460747 1.0E-06 AAAGTCAACAAA 12
NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 35460735 35460743 2.0E-06 AAAAGTCAA 9
SOX8_HMG_DBD_dimeric_16_1 SELEX + 35466673 35466688 1.0E-06 AACAAGATGCAGTGAC 16
FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 35460736 35460746 8.0E-06 AAAGTCAACAA 11
Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX + 35460804 35460820 6.0E-06 AGGTCTAAGCAGGGTCA 17
TFEB_bHLH_full_dimeric_10_1 SELEX - 35460817 35460826 8.0E-06 GTCACATGAC 10
SOX15_HMG_full_dimeric_15_1 SELEX - 35466827 35466841 4.0E-06 CAGAAAAACATTGCT 15
TFCP2_CP2_full_dimeric_10_1 SELEX + 35460745 35460754 7.0E-06 AAACTGGTTC 10
MZF1_5-13_MA0057.1 JASPAR + 35460972 35460981 4.0E-06 GGAGGGGGAA 10
RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX + 35460801 35460820 1.0E-06 GATAGGTCTAAGCAGGGTCA 20
ETV6_ETS_full_dimeric_15_1 SELEX - 35460866 35460880 5.0E-06 TCAGAAGTGGAAGTG 15
FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 35460737 35460749 6.0E-06 AAGTCAACAAACT 13
V_SPI1_01_M01203 TRANSFAC - 35465706 35465722 5.0E-06 AAAACAGGGAAGTAGAG 17
V_FOXA2_04_M02749 TRANSFAC + 35460734 35460750 1.0E-06 CAAAAGTCAACAAACTG 17
V_SOX30_03_M02804 TRANSFAC + 35460944 35460959 3.0E-06 GTTGAACAATGAGAAC 16
V_AR_Q6_01_M01996 TRANSFAC + 35460915 35460929 8.0E-06 ATACTGAATGTTCTC 15
V_MAFB_03_M02879 TRANSFAC - 35466833 35466847 6.0E-06 CCTTTGCAGAAAAAC 15
V_HNF3_Q6_01_M01012 TRANSFAC - 35460733 35460750 8.0E-06 CAGTTTGTTGACTTTTGC 18
V_HNF3_Q6_01_M01012 TRANSFAC - 35460905 35460922 4.0E-06 TTCAGTATTTGGTTTTCT 18
V_FOXJ1_03_M02750 TRANSFAC + 35460736 35460751 2.0E-06 AAAGTCAACAAACTGG 16
V_FOXO1_02_M00474 TRANSFAC - 35460736 35460749 8.0E-06 AGTTTGTTGACTTT 14
V_XFD3_01_M00269 TRANSFAC + 35460736 35460749 1.0E-06 AAAGTCAACAAACT 14
V_JUNDM2_04_M02876 TRANSFAC - 35460874 35460889 9.0E-06 TTTGATGAGTCAGAAG 16
V_GR_01_M00955 TRANSFAC + 35460908 35460934 4.0E-06 AAACCAAATACTGAATGTTCTCACTCA 27
V_GR_Q6_M00192 TRANSFAC - 35460944 35460962 9.0E-06 TGTGTTCTCATTGTTCAAC 19
V_GRE_C_M00205 TRANSFAC - 35460954 35460969 6.0E-06 GTGTCCATGTGTTCTC 16
V_AP1_C_M00199 TRANSFAC - 35460877 35460885 3.0E-06 ATGAGTCAG 9
V_AP1_01_M00517 TRANSFAC - 35460875 35460887 3.0E-06 TGATGAGTCAGAA 13
V_SOX11_03_M02795 TRANSFAC + 35460943 35460959 8.0E-06 AGTTGAACAATGAGAAC 17
V_SOX9_B1_M00410 TRANSFAC + 35460944 35460957 9.0E-06 GTTGAACAATGAGA 14
V_ISGF4G_04_M02875 TRANSFAC - 35466826 35466839 1.0E-05 GAAAAACATTGCTG 14
V_MAF_Q6_01_M00983 TRANSFAC - 35460877 35460887 4.0E-06 TGATGAGTCAG 11
V_NEUROD_02_M01288 TRANSFAC + 35465687 35465698 6.0E-06 CTGCTGCTGGCT 12
V_TFEB_01_M01768 TRANSFAC + 35460817 35460826 8.0E-06 GTCATGTGAC 10
V_TFEB_01_M01768 TRANSFAC - 35460817 35460826 8.0E-06 GTCACATGAC 10
V_FOXL1_04_M02753 TRANSFAC + 35460734 35460750 4.0E-06 CAAAAGTCAACAAACTG 17
V_NRF2_Q4_M00821 TRANSFAC - 35460876 35460888 6.0E-06 TTGATGAGTCAGA 13
V_FOXO3_01_M00477 TRANSFAC - 35460736 35460749 5.0E-06 AGTTTGTTGACTTT 14
V_FOXA2_03_M02260 TRANSFAC - 35460734 35460745 6.0E-06 TGTTGACTTTTG 12
V_FOX_Q2_M00809 TRANSFAC - 35460736 35460748 3.0E-06 GTTTGTTGACTTT 13
V_FREAC4_01_M00292 TRANSFAC + 35460734 35460749 2.0E-06 CAAAAGTCAACAAACT 16
V_PBX1_04_M01357 TRANSFAC + 35460878 35460894 2.0E-06 TGACTCATCAAAATTTC 17
V_BRCA_01_M01082 TRANSFAC - 35460901 35460908 1.0E-05 TTCTGTTG 8
V_FOXK1_03_M02752 TRANSFAC + 35460734 35460750 2.0E-06 CAAAAGTCAACAAACTG 17
V_AR_Q2_M00447 TRANSFAC + 35460914 35460928 2.0E-06 AATACTGAATGTTCT 15
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL