Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PDCD5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9141 programmed cell death 5 chr19 + 33067093 - 33072593 33072093 Transcription Factor Binding Sites   Download all TFBS in the PDCD5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints DLX1_homeodomain_DBD_monomeric_10_1 SELEX + 33071823 33071832 2.0E-06 CATAATTATT 10 DLX1_homeodomain_DBD_monomeric_10_1 SELEX - 33071823 33071832 4.0E-06 AATAATTATG 10 RARA_nuclearreceptor_full_dimeric_18_1 SELEX - 33071606 33071623 0.0E+00 TAGGGTCATTTGAGGTCA 18 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 33071828 33071844 6.0E-06 ATCAACAAGTATAATAA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 33071768 33071779 0.0E+00 TCTATAAATAGA 12 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 33071768 33071779 2.0E-06 TCTATTTATAGA 12 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 33071825 33071839 2.0E-06 CAAGTATAATAATTA 15 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 33071606 33071622 3.0E-06 AGGGTCATTTGAGGTCA 17 TBP_MA0108.2 JASPAR + 33071769 33071783 5.0E-06 CTATAAATAGAGATA 15 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 33071606 33071622 0.0E+00 AGGGTCATTTGAGGTCA 17 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 33071606 33071623 0.0E+00 TAGGGTCATTTGAGGTCA 18 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 33071768 33071779 0.0E+00 TCTATAAATAGA 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 33071768 33071779 3.0E-06 TCTATTTATAGA 12 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX - 33071613 33071630 6.0E-06 GAGGCGGTAGGGTCATTT 18 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX - 33071823 33071832 9.0E-06 AATAATTATG 10 RUNX3_RUNX_full_monomeric_10_1 SELEX - 33072905 33072914 7.0E-06 AAACCACAAC 10 MEF2B_MADS_full_dimeric_12_1 SELEX + 33071768 33071779 0.0E+00 TCTATAAATAGA 12 MEF2B_MADS_full_dimeric_12_1 SELEX - 33071768 33071779 4.0E-06 TCTATTTATAGA 12 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 33072906 33072914 8.0E-06 AAACCACAA 9 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX - 33071606 33071622 0.0E+00 AGGGTCATTTGAGGTCA 17 MEF2A_MA0052.1 JASPAR + 33071769 33071778 6.0E-06 CTATAAATAG 10 MEF2A_MA0052.1 JASPAR - 33071769 33071778 0.0E+00 CTATTTATAG 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 33072950 33072963 7.0E-06 CAGAAATCAATGAA 14 SP4_C2H2_full_monomeric_17_1 SELEX + 33071960 33071976 4.0E-06 CAGGCCCCGCCCCTCCG 17 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX - 33071606 33071622 0.0E+00 AGGGTCATTTGAGGTCA 17 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 33072858 33072870 9.0E-06 AGGGGAATCCCTG 13 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 33071831 33071846 9.0E-06 GCATCAACAAGTATAA 16 HLF_MA0043.1 JASPAR + 33072846 33072857 3.0E-06 GGTTTCGTAATA 12 RUNX1_MA0002.2 JASPAR + 33072904 33072914 3.0E-06 GGTTGTGGTTT 11 NRF1_NRF_full_dimeric_12_1 SELEX - 33072085 33072096 1.0E-05 TGCGCAGGCGCT 12 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 33072950 33072963 5.0E-06 CAGAAATCAATGAA 14 DLX5_homeodomain_FL_monomeric_8_1 SELEX + 33071824 33071831 4.0E-06 ATAATTAT 8 DLX5_homeodomain_FL_monomeric_8_1 SELEX - 33071824 33071831 4.0E-06 ATAATTAT 8 V_AML_Q6_M00769 TRANSFAC + 33072902 33072916 6.0E-06 GAGGTTGTGGTTTTA 15 V_CDX2_Q5_01_M01659 TRANSFAC + 33071768 33071778 5.0E-06 TCTATAAATAG 11 V_GATA1_Q6_M02004 TRANSFAC + 33072731 33072745 2.0E-06 GTTTCTGATAAGGGA 15 V_SRY_07_M02813 TRANSFAC + 33071823 33071838 2.0E-06 CATAATTATTATACTT 16 V_SRY_07_M02813 TRANSFAC - 33071823 33071838 4.0E-06 AAGTATAATAATTATG 16 V_BCL6B_03_M02740 TRANSFAC + 33072813 33072828 7.0E-06 ATTTTCCAGAAATTAT 16 V_ZFX_01_M01593 TRANSFAC + 33071957 33071972 2.0E-06 CCCCAGGCCCCGCCCC 16 V_ACAAT_B_M00309 TRANSFAC + 33072061 33072069 8.0E-06 GATTGGTGG 9 V_BCL6_01_M01183 TRANSFAC - 33072822 33072837 3.0E-06 CATGTAGGAATAATTT 16 V_AML3_Q6_M01856 TRANSFAC - 33072906 33072913 1.0E-05 AACCACAA 8 V_HOXA13_02_M01297 TRANSFAC - 33072808 33072816 1.0E-06 AAATAAAAC 9 V_SATB1_Q3_M01723 TRANSFAC + 33071771 33071786 8.0E-06 ATAAATAGAGATAATA 16 V_SP1_Q6_01_M00931 TRANSFAC - 33071880 33071889 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 33071951 33071960 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 33071963 33071972 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC + 33071762 33071783 0.0E+00 TCCTCATCTATAAATAGAGATA 22 V_DR4_Q2_M00965 TRANSFAC + 33071606 33071622 1.0E-06 TGACCTCAAATGACCCT 17 V_NFAT3_Q3_M01734 TRANSFAC + 33072811 33072820 1.0E-05 TTATTTTCCA 10 V_SOX11_04_M02899 TRANSFAC + 33071824 33071837 1.0E-05 ATAATTATTATACT 14 V_AP2_Q6_01_M00915 TRANSFAC + 33071953 33071965 6.0E-06 CCCGCCCCAGGCC 13 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 33072860 33072871 7.0E-06 GGGATTCCCCTC 12 V_SOX21_03_M02803 TRANSFAC + 33071820 33071835 1.0E-05 ACCCATAATTATTATA 16 V_SOX21_03_M02803 TRANSFAC - 33071820 33071835 6.0E-06 TATAATAATTATGGGT 16 V_SOX21_03_M02803 TRANSFAC + 33071823 33071838 1.0E-06 CATAATTATTATACTT 16 V_SOX21_03_M02803 TRANSFAC - 33071823 33071838 0.0E+00 AAGTATAATAATTATG 16 V_SOX21_03_M02803 TRANSFAC + 33071826 33071841 5.0E-06 AATTATTATACTTGTT 16 V_SOX21_03_M02803 TRANSFAC - 33071826 33071841 6.0E-06 AACAAGTATAATAATT 16 V_TCFAP2E_04_M02926 TRANSFAC - 33072810 33072823 5.0E-06 TTCTGGAAAATAAA 14 V_NKX62_Q2_M00489 TRANSFAC - 33071823 33071834 0.0E+00 ATAATAATTATG 12 V_MEF2A_Q6_M02024 TRANSFAC - 33071768 33071777 1.0E-06 TATTTATAGA 10 V_HNF6_Q6_M00639 TRANSFAC - 33072951 33072962 2.0E-06 AGAAATCAATGA 12 V_GC_01_M00255 TRANSFAC - 33071961 33071974 2.0E-06 GAGGGGCGGGGCCT 14 V_RUNX1_01_M02257 TRANSFAC + 33072904 33072914 3.0E-06 GGTTGTGGTTT 11 V_SOX1_04_M02906 TRANSFAC + 33071822 33071836 9.0E-06 CCATAATTATTATAC 15 V_TATA_01_M00252 TRANSFAC + 33071769 33071783 5.0E-06 CTATAAATAGAGATA 15 V_AML2_01_M01759 TRANSFAC - 33072906 33072913 1.0E-05 AACCACAA 8 V_RSRFC4_Q2_M00407 TRANSFAC - 33071765 33071781 3.0E-06 TCTCTATTTATAGATGA 17 V_RSRFC4_Q2_M00407 TRANSFAC + 33071766 33071782 5.0E-06 CATCTATAAATAGAGAT 17 V_SP1_Q6_M00196 TRANSFAC - 33071962 33071974 1.0E-06 GAGGGGCGGGGCC 13 V_ARID3A_02_M02839 TRANSFAC - 33071826 33071840 6.0E-06 ACAAGTATAATAATT 15 V_LXR_DR4_Q3_M00766 TRANSFAC + 33071606 33071621 0.0E+00 TGACCTCAAATGACCC 16 V_MEF2_03_M00232 TRANSFAC + 33071762 33071783 1.0E-06 TCCTCATCTATAAATAGAGATA 22 V_MEF2_03_M00232 TRANSFAC - 33071764 33071785 8.0E-06 ATTATCTCTATTTATAGATGAG 22 V_SREBP_Q6_M01168 TRANSFAC + 33071727 33071741 9.0E-06 TCCATCACCCCACTC 15 V_ISRE_01_M00258 TRANSFAC + 33072971 33072985 1.0E-06 CAGTTTCTTATTTGG 15 V_OCT1_08_M01354 TRANSFAC - 33071821 33071836 1.0E-05 GTATAATAATTATGGG 16 V_HBP1_03_M02762 TRANSFAC - 33072946 33072961 6.0E-06 GAAATCAATGAACTAG 16 V_XFD2_01_M00268 TRANSFAC + 33071768 33071781 4.0E-06 TCTATAAATAGAGA 14 V_SRF_Q5_02_M01007 TRANSFAC + 33072971 33072989 2.0E-06 CAGTTTCTTATTTGGGGAG 19 V_ICSBP_Q6_M00699 TRANSFAC - 33071849 33071860 5.0E-06 AACCTGAAAGTG 12 V_SP4_Q5_M01273 TRANSFAC + 33071963 33071973 8.0E-06 GCCCCGCCCCT 11 V_HOXA7_02_M01336 TRANSFAC + 33071820 33071836 9.0E-06 ACCCATAATTATTATAC 17 V_TBP_01_M00471 TRANSFAC + 33071770 33071777 4.0E-06 TATAAATA 8 V_HOXB8_01_M01451 TRANSFAC + 33071820 33071835 8.0E-06 ACCCATAATTATTATA 16 V_GATA1_04_M00128 TRANSFAC + 33072733 33072745 4.0E-06 TTCTGATAAGGGA 13 V_GATA3_02_M00350 TRANSFAC + 33071777 33071786 0.0E+00 AGAGATAATA 10 V_ZFP206_01_M01742 TRANSFAC - 33072086 33072096 1.0E-06 TGCGCAGGCGC 11 V_RSRFC4_01_M00026 TRANSFAC + 33071766 33071781 4.0E-06 CATCTATAAATAGAGA 16 V_RSRFC4_01_M00026 TRANSFAC - 33071766 33071781 0.0E+00 TCTCTATTTATAGATG 16 V_T3RBETA_Q6_01_M02119 TRANSFAC - 33071605 33071621 0.0E+00 GGGTCATTTGAGGTCAG 17 V_SRF_Q5_01_M00922 TRANSFAC - 33072971 33072985 2.0E-06 CCAAATAAGAAACTG 15 V_SRF_Q4_M00810 TRANSFAC - 33072969 33072986 1.0E-06 CCCAAATAAGAAACTGGG 18 V_BBX_03_M02739 TRANSFAC + 33072947 33072961 5.0E-06 TAGTTCATTGATTTC 15 V_BBX_03_M02739 TRANSFAC - 33072947 33072961 1.0E-06 GAAATCAATGAACTA 15 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 33071601 33071615 8.0E-06 TTTGAGGTCAGGAGT 15 V_SREBP1_02_M00221 TRANSFAC + 33071729 33071739 1.0E-06 CATCACCCCAC 11 V_GATA2_03_M00349 TRANSFAC + 33071777 33071786 1.0E-06 AGAGATAATA 10 V_FOXJ2_01_M00422 TRANSFAC + 33071765 33071782 9.0E-06 TCATCTATAAATAGAGAT 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 33072907 33072914 1.0E-05 TGTGGTTT 8 V_SP1_Q2_01_M00933 TRANSFAC + 33071964 33071973 7.0E-06 CCCCGCCCCT 10 V_LHX4_01_M01421 TRANSFAC - 33071819 33071835 8.0E-06 TATAATAATTATGGGTG 17 V_SP1_Q4_01_M00932 TRANSFAC - 33071962 33071974 2.0E-06 GAGGGGCGGGGCC 13 V_STAT1_05_M01260 TRANSFAC - 33072805 33072826 1.0E-05 AATTTCTGGAAAATAAAACGGG 22 V_SOX14_03_M02798 TRANSFAC + 33071823 33071838 2.0E-06 CATAATTATTATACTT 16 V_SOX14_03_M02798 TRANSFAC - 33071823 33071838 2.0E-06 AAGTATAATAATTATG 16 V_SOX14_03_M02798 TRANSFAC - 33071826 33071841 5.0E-06 AACAAGTATAATAATT 16 V_T3RALPHA_Q6_M01724 TRANSFAC - 33071605 33071615 1.0E-06 TTTGAGGTCAG 11 V_HSF1_Q6_01_M02017 TRANSFAC - 33072815 33072828 4.0E-06 ATAATTTCTGGAAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.