Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SLC39A13 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 91252 solute carrier family 39 (zinc transporter), member 13 chr11 + 47425045 - 47430545 47430045 Transcription Factor Binding Sites   Download all TFBS in the SLC39A13 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 47433882 47433900 2.0E-06 CCACCTGCAGGGGGCGGCA 19 SOX10_HMG_full_dimeric_16_1 SELEX + 47431432 47431447 5.0E-06 AAAAATACGCAGTGCT 16 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 47430019 47430029 6.0E-06 GCCACTCCCCC 11 SOX9_HMG_full_dimeric_16_1 SELEX + 47431432 47431447 7.0E-06 AAAAATACGCAGTGCT 16 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 47428658 47428666 2.0E-06 TATGCAAAT 9 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 47428697 47428705 8.0E-06 TATGCAAAA 9 SOX8_HMG_DBD_dimeric_16_1 SELEX + 47431432 47431447 5.0E-06 AAAAATACGCAGTGCT 16 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 47430716 47430726 1.0E-06 AGCCTGAGGCA 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 47430716 47430726 4.0E-06 TGCCTCAGGCT 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 47431386 47431396 3.0E-06 AGCCTCAGGCG 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 47431386 47431396 7.0E-06 CGCCTGAGGCT 11 POU2F3_POU_DBD_monomeric_9_1 SELEX - 47428658 47428666 2.0E-06 TATGCAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX - 47428697 47428705 8.0E-06 TATGCAAAA 9 SOX8_HMG_full_dimeric_17_1 SELEX - 47430568 47430584 7.0E-06 AATCAGGGGCACTGATG 17 POU1F1_POU_DBD_monomeric_14_1 SELEX - 47428655 47428668 0.0E+00 AATATGCAAATGAT 14 Esrrb_MA0141.1 JASPAR + 47430699 47430710 0.0E+00 AGCTCAAGGTCA 12 SOX7_HMG_full_dimeric_17_2 SELEX - 47429599 47429615 8.0E-06 AGGGAATTTTATTCTTA 17 POU2F2_POU_DBD_monomeric_11_1 SELEX - 47428657 47428667 0.0E+00 ATATGCAAATG 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 47430716 47430726 3.0E-06 AGCCTGAGGCA 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 47430716 47430726 2.0E-06 TGCCTCAGGCT 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 47431386 47431396 3.0E-06 AGCCTCAGGCG 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 47431386 47431396 8.0E-06 CGCCTGAGGCT 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 47428658 47428666 2.0E-06 TATGCAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 47428658 47428666 2.0E-06 TATGCAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 47428697 47428705 7.0E-06 TATGCAAAA 9 SPIB_ETS_DBD_monomeric_14_1 SELEX - 47429656 47429669 1.0E-06 GGAAAGGGGAAGTG 14 RARG_nuclearreceptor_full_dimeric_18_1 SELEX - 47430499 47430516 8.0E-06 GCGGTCACGCAGAGGTGA 18 POU3F3_POU_DBD_monomeric_13_1 SELEX - 47428656 47428668 0.0E+00 AATATGCAAATGA 13 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX - 47430499 47430515 1.0E-05 CGGTCACGCAGAGGTGA 17 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX - 47430072 47430084 7.0E-06 GGCCACGTCACAA 13 RARA_nuclearreceptor_full_dimeric_17_1 SELEX - 47430499 47430515 8.0E-06 CGGTCACGCAGAGGTGA 17 RFX3_RFX_DBD_dimeric_15_1 SELEX + 47428758 47428772 6.0E-06 CTTTGCCAAGAAACT 15 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 47430702 47430711 3.0E-06 TCAAGGTCAC 10 SOX7_HMG_full_dimeric_16_1 SELEX + 47431432 47431447 5.0E-06 AAAAATACGCAGTGCT 16 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 47429502 47429517 4.0E-06 CAGCCACCATGCATTG 16 POU3F1_POU_DBD_monomeric_12_1 SELEX - 47428656 47428667 0.0E+00 ATATGCAAATGA 12 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX + 47430701 47430711 5.0E-06 CTCAAGGTCAC 11 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 47429661 47429675 8.0E-06 AGCAAGGGAAAGGGG 15 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 47430716 47430726 1.0E-06 AGCCTGAGGCA 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 47430716 47430726 2.0E-06 TGCCTCAGGCT 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 47431386 47431396 4.0E-06 AGCCTCAGGCG 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 47431386 47431396 9.0E-06 CGCCTGAGGCT 11 CREB3L1_bZIP_full_dimeric_14_1 SELEX - 47430072 47430085 7.0E-06 CGGCCACGTCACAA 14 Myf_MA0055.1 JASPAR + 47433923 47433934 1.0E-06 CAGCAACAGCTG 12 PPARG_MA0066.1 JASPAR + 47428543 47428562 9.0E-06 GTAGTGCATTGGCACCAAGT 20 SOX21_HMG_DBD_dimeric_16_1 SELEX + 47431432 47431447 1.0E-05 AAAAATACGCAGTGCT 16 POU2F1_POU_DBD_monomeric_12_1 SELEX - 47428657 47428668 0.0E+00 AATATGCAAATG 12 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 47430702 47430712 1.0E-06 TCAAGGTCACA 11 SPI1_ETS_full_monomeric_14_1 SELEX - 47429656 47429669 1.0E-06 GGAAAGGGGAAGTG 14 POU3F2_POU_DBD_monomeric_12_1 SELEX - 47428656 47428667 0.0E+00 ATATGCAAATGA 12 HMBOX1_homeodomain_DBD_monomeric_10_1 SELEX + 47430582 47430591 2.0E-06 ATTAGTTAAG 10 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 47430716 47430726 2.0E-06 AGCCTGAGGCA 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 47430716 47430726 3.0E-06 TGCCTCAGGCT 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 47431386 47431396 4.0E-06 AGCCTCAGGCG 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 47431386 47431396 4.0E-06 CGCCTGAGGCT 11 TEAD1_MA0090.1 JASPAR + 47430820 47430831 3.0E-06 CACATTCCTGCT 12 IRF2_MA0051.1 JASPAR + 47429567 47429584 3.0E-06 GAAAAACCAAAGCATAAA 18 V_FOXP1_01_M00987 TRANSFAC - 47429568 47429587 1.0E-06 ATTTTTATGCTTTGGTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 47429570 47429589 1.0E-06 TTATTTTTATGCTTTGGTTT 20 V_CEBPG_Q6_M00622 TRANSFAC - 47428647 47428659 3.0E-06 ATGATTTCACAAT 13 V_SPI1_01_M01203 TRANSFAC - 47429653 47429669 3.0E-06 GGAAAGGGGAAGTGCCT 17 V_AP1_Q2_M00173 TRANSFAC + 47429695 47429705 3.0E-06 GCTGACTCAGA 11 V_IPF1_02_M01234 TRANSFAC - 47430579 47430588 6.0E-06 AACTAATCAG 10 V_POU3F3_01_M03090 TRANSFAC + 47428655 47428671 8.0E-06 ATCATTTGCATATTGTG 17 V_BACH2_01_M00490 TRANSFAC - 47430782 47430792 6.0E-06 CGTGAGTCAAC 11 V_NRSF_Q4_M01028 TRANSFAC - 47433916 47433934 3.0E-06 CAGCTGTTGCTGCTGCTGC 19 V_ERR3_Q2_01_M02094 TRANSFAC + 47430700 47430712 3.0E-06 GCTCAAGGTCACA 13 V_LRH1_Q5_01_M02098 TRANSFAC + 47430700 47430710 2.0E-06 GCTCAAGGTCA 11 V_MMEF2_Q6_M00405 TRANSFAC + 47429600 47429615 1.0E-05 AAGAATAAAATTCCCT 16 V_OCT1_Q5_01_M00930 TRANSFAC + 47428656 47428666 1.0E-06 TCATTTGCATA 11 V_OCT1_Q5_01_M00930 TRANSFAC + 47428675 47428685 4.0E-06 TGCTTTGCATA 11 V_ZTA_Q2_M00711 TRANSFAC - 47429595 47429607 5.0E-06 TTATTCTTACTCA 13 V_OCTAMER_01_M01324 TRANSFAC + 47428655 47428671 8.0E-06 ATCATTTGCATATTGTG 17 V_NFAT3_Q3_M01734 TRANSFAC - 47431428 47431437 6.0E-06 ATTTTTTCCT 10 V_OCT1_01_M00135 TRANSFAC - 47428653 47428671 1.0E-06 CACAATATGCAAATGATTT 19 V_CEBP_01_M00159 TRANSFAC - 47429411 47429423 9.0E-06 TCTTTGGTTAGAC 13 V_POU2F3_01_M01476 TRANSFAC - 47428654 47428669 0.0E+00 CAATATGCAAATGATT 16 V_PLAG1_02_M01973 TRANSFAC + 47433835 47433850 7.0E-06 CCCCCTCCTATGGCCC 16 V_OCT_C_M00210 TRANSFAC + 47428655 47428667 0.0E+00 ATCATTTGCATAT 13 V_OCT_C_M00210 TRANSFAC + 47428674 47428686 7.0E-06 GTGCTTTGCATAA 13 V_NKX24_01_M01350 TRANSFAC - 47428666 47428681 3.0E-06 CAAAGCACTTCACAAT 16 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC + 47431448 47431463 2.0E-06 CAGGAGTAGGGTGTGG 16 V_PU1_Q4_M01172 TRANSFAC + 47429650 47429668 6.0E-06 GGCAGGCACTTCCCCTTTC 19 V_SOX21_03_M02803 TRANSFAC - 47429579 47429594 6.0E-06 TCGAATTATTTTTATG 16 V_ZFP691_03_M02833 TRANSFAC + 47431437 47431453 9.0E-06 TACGCAGTGCTCAGGAG 17 V_TCFAP2E_04_M02926 TRANSFAC + 47431425 47431438 3.0E-06 AGAAGGAAAAAATA 14 V_CEBPB_01_M00109 TRANSFAC + 47428645 47428658 8.0E-06 TTATTGTGAAATCA 14 V_HELIOSA_02_M01004 TRANSFAC + 47431425 47431435 6.0E-06 AGAAGGAAAAA 11 V_MYF_01_M01302 TRANSFAC + 47433923 47433934 1.0E-06 CAGCAACAGCTG 12 V_SPI1_03_M02078 TRANSFAC - 47429656 47429665 1.0E-05 AGGGGAAGTG 10 V_OCT1_02_M00136 TRANSFAC - 47428657 47428671 1.0E-05 CACAATATGCAAATG 15 V_TCFAP2C_03_M02821 TRANSFAC - 47431384 47431398 8.0E-06 TCCGCCTGAGGCTAA 15 V_ZBED6_01_M01598 TRANSFAC + 47430330 47430341 2.0E-06 CAGGCTCGCCCG 12 V_RFX1_01_M00280 TRANSFAC + 47428551 47428567 5.0E-06 TTGGCACCAAGTAACGT 17 V_AMEF2_Q6_M00403 TRANSFAC + 47429600 47429617 4.0E-06 AAGAATAAAATTCCCTCT 18 V_FOXK1_04_M02856 TRANSFAC - 47428640 47428654 3.0E-06 TTCACAATAACACAG 15 V_MAZ_Q6_01_M02023 TRANSFAC - 47430380 47430393 6.0E-06 GAGGGAGGGATGGG 14 V_AP2BETA_Q3_M01858 TRANSFAC - 47429934 47429949 6.0E-06 GCTGCGGGCCGGAGGG 16 V_AP2BETA_Q3_M01858 TRANSFAC + 47430099 47430114 3.0E-06 GCCCCGGGCCGGGGGC 16 V_OCT1_05_M00161 TRANSFAC + 47428655 47428668 0.0E+00 ATCATTTGCATATT 14 V_OCT1_05_M00161 TRANSFAC + 47428674 47428687 6.0E-06 GTGCTTTGCATAAG 14 V_TTF1_Q6_M00794 TRANSFAC + 47428969 47428980 7.0E-06 CTCTCAAGAGCC 12 V_NKX22_02_M01372 TRANSFAC - 47428665 47428681 7.0E-06 CAAAGCACTTCACAATA 17 V_NFE4_Q5_M02105 TRANSFAC - 47433672 47433683 7.0E-06 ATCCCTCTCCTG 12 V_OCT1_04_M00138 TRANSFAC - 47428651 47428673 5.0E-06 TTCACAATATGCAAATGATTTCA 23 V_SP1SP3_Q4_M01219 TRANSFAC + 47433884 47433894 8.0E-06 CCGCCCCCTGC 11 V_SPIB_01_M01204 TRANSFAC - 47429653 47429669 1.0E-06 GGAAAGGGGAAGTGCCT 17 V_DAX1_01_M01248 TRANSFAC + 47430697 47430716 1.0E-06 CCAGCTCAAGGTCACAGCCA 20 V_TEF_01_M01305 TRANSFAC + 47430820 47430831 3.0E-06 CACATTCCTGCT 12 V_OCAB_Q6_M02113 TRANSFAC - 47428676 47428686 6.0E-06 TTATGCAAAGC 11 V_ELK1_02_M00025 TRANSFAC + 47429955 47429968 3.0E-06 CCAAACGGAAGTGC 14 V_TAXCREB_02_M00115 TRANSFAC - 47433934 47433948 7.0E-06 ATGACCCACAGCCCC 15 V_CTCF_02_M01259 TRANSFAC - 47433884 47433903 7.0E-06 TCACCACCTGCAGGGGGCGG 20 V_CTCF_01_M01200 TRANSFAC - 47433882 47433901 1.0E-06 ACCACCTGCAGGGGGCGGCA 20 V_BLIMP1_Q6_M01066 TRANSFAC - 47429661 47429676 2.0E-06 GAGCAAGGGAAAGGGG 16 V_OCT1_B_M00342 TRANSFAC - 47428657 47428666 2.0E-06 TATGCAAATG 10 V_OCT1_B_M00342 TRANSFAC - 47428676 47428685 7.0E-06 TATGCAAAGC 10 V_OCT1_B_M00342 TRANSFAC - 47428696 47428705 8.0E-06 TATGCAAAAG 10 V_OCT_Q6_M00795 TRANSFAC + 47428656 47428666 0.0E+00 TCATTTGCATA 11 V_OCT_Q6_M00795 TRANSFAC + 47428675 47428685 6.0E-06 TGCTTTGCATA 11 V_HOXD9_Q2_M01834 TRANSFAC + 47429576 47429585 4.0E-06 AAGCATAAAA 10 V_SF1_Q6_01_M01132 TRANSFAC - 47430702 47430710 3.0E-06 TGACCTTGA 9 V_ELF1_Q6_M00746 TRANSFAC - 47429657 47429668 1.0E-05 GAAAGGGGAAGT 12 V_GCNF_01_M00526 TRANSFAC + 47430695 47430712 2.0E-06 CACCAGCTCAAGGTCACA 18 V_CIZ_01_M00734 TRANSFAC + 47431430 47431438 3.0E-06 GAAAAAATA 9 V_TTF1_Q5_M02034 TRANSFAC - 47428968 47428981 4.0E-06 GGGCTCTTGAGAGC 14 V_OCT2_01_M01368 TRANSFAC - 47428654 47428669 0.0E+00 CAATATGCAAATGATT 16 V_AP1FJ_Q2_M00172 TRANSFAC + 47429695 47429705 7.0E-06 GCTGACTCAGA 11 V_FOXL1_02_M02857 TRANSFAC - 47428641 47428656 2.0E-06 ATTTCACAATAACACA 16 V_OCT1_Q6_M00195 TRANSFAC - 47428655 47428669 0.0E+00 CAATATGCAAATGAT 15 V_HDX_01_M01333 TRANSFAC + 47428647 47428663 8.0E-06 ATTGTGAAATCATTTGC 17 V_ERR1_Q2_M00511 TRANSFAC + 47430699 47430712 0.0E+00 AGCTCAAGGTCACA 14 V_TEF1_Q6_03_M01817 TRANSFAC - 47430821 47430829 9.0E-06 CAGGAATGT 9 V_ERR2_01_M01589 TRANSFAC + 47430702 47430713 1.0E-06 TCAAGGTCACAG 12 V_NRSF_01_M00256 TRANSFAC - 47431387 47431407 7.0E-06 GTCAGCACCTCCGCCTGAGGC 21 V_ASCL2_04_M02841 TRANSFAC - 47431452 47431467 5.0E-06 GTCTCCACACCCTACT 16 V_CEBPB_Q6_M01896 TRANSFAC + 47428648 47428657 7.0E-06 TTGTGAAATC 10 V_TCFAP2B_04_M02924 TRANSFAC + 47431384 47431398 8.0E-06 TTAGCCTCAGGCGGA 15 V_PIT1_Q6_M00802 TRANSFAC - 47429589 47429606 1.0E-05 TATTCTTACTCATCGAAT 18 V_CEBP_Q2_01_M00912 TRANSFAC - 47428645 47428656 3.0E-06 ATTTCACAATAA 12 V_AP2ALPHA_03_M01047 TRANSFAC + 47431384 47431398 1.0E-05 TTAGCCTCAGGCGGA 15 V_AP2ALPHA_03_M01047 TRANSFAC - 47431384 47431398 1.0E-05 TCCGCCTGAGGCTAA 15 V_TCFAP2E_03_M02822 TRANSFAC + 47431384 47431398 6.0E-06 TTAGCCTCAGGCGGA 15 V_TCFAP2E_03_M02822 TRANSFAC - 47431384 47431398 1.0E-06 TCCGCCTGAGGCTAA 15 V_ELK1_03_M01163 TRANSFAC + 47429957 47429967 1.0E-05 AAACGGAAGTG 11 V_RNF96_01_M01199 TRANSFAC + 47429941 47429950 7.0E-06 GCCCGCAGCC 10 V_TCF3_05_M02920 TRANSFAC + 47429576 47429590 8.0E-06 AAGCATAAAAATAAT 15 V_PAX6_01_M00097 TRANSFAC - 47429568 47429588 4.0E-06 TATTTTTATGCTTTGGTTTTT 21 V_SOX14_03_M02798 TRANSFAC - 47429579 47429594 6.0E-06 TCGAATTATTTTTATG 16 V_ETV3_02_M02068 TRANSFAC + 47429958 47429967 9.0E-06 AACGGAAGTG 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.