Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CLDN9 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 9080 claudin 9 chr16 + 3057456 - 3062956 3062456 Transcription Factor Binding Sites   Download all TFBS in the CLDN9 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX + 3058485 3058495 8.0E-06 GAGGTGTTAAA 11 LBX2_homeodomain_DBD_dimeric_13_1 SELEX - 3057715 3057727 1.0E-05 TTGGATCTGATTA 13 SP3_C2H2_DBD_monomeric_11_1 SELEX + 3058155 3058165 6.0E-06 CCCACACCCAC 11 ESRRA_nuclearreceptor_DBD_dimeric_19_1 SELEX + 3066338 3066356 5.0E-06 CAATGACAGTCCAAGGCCA 19 TBR1_TBX_DBD_monomeric_10_1 SELEX + 3058486 3058495 2.0E-06 AGGTGTTAAA 10 Zfp652_C2H2_DBD_monomeric_13_1 SELEX - 3058577 3058589 2.0E-06 AGGAAGGGTTAAG 13 RFX4_RFX_DBD_dimeric_16_1 SELEX - 3062338 3062353 9.0E-06 CATCGCCCTGGCAACG 16 SOX8_HMG_full_dimeric_17_1 SELEX + 3058541 3058557 5.0E-06 TATCAATGGCATTCCAG 17 EWSR1-FLI1_MA0149.1 JASPAR - 3058198 3058215 9.0E-06 GAAAGGAAGGAAGTTACC 18 EWSR1-FLI1_MA0149.1 JASPAR - 3058202 3058219 3.0E-06 AAAGGAAAGGAAGGAAGT 18 EWSR1-FLI1_MA0149.1 JASPAR - 3058389 3058406 3.0E-06 GGAGGAAAGGAAGCCGGC 18 NFIX_NFI_full_dimeric_15_2 SELEX - 3060181 3060195 1.0E-05 CTGGAAAATGGCCAT 15 POU1F1_POU_DBD_monomeric_14_1 SELEX + 3066302 3066315 6.0E-06 TGAATGCAAATGAA 14 POU3F4_POU_DBD_monomeric_9_1 SELEX + 3066304 3066312 7.0E-06 AATGCAAAT 9 Sox1_HMG_DBD_dimeric_13_1 SELEX + 3058543 3058555 7.0E-06 TCAATGGCATTCC 13 Pax4_MA0068.1 JASPAR - 3062303 3062332 1.0E-06 GAAAACTACCCCCCACTTCAACCTCAGCTC 30 SOX8_HMG_full_dimeric_13_1 SELEX + 3058542 3058554 7.0E-06 ATCAATGGCATTC 13 SP1_MA0079.2 JASPAR + 3058431 3058440 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 3058466 3058475 3.0E-06 CCCCTCCCCC 10 TBR1_TBX_full_monomeric_11_1 SELEX + 3058485 3058495 4.0E-06 GAGGTGTTAAA 11 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX - 3060124 3060136 6.0E-06 AGCCCCTGGGGCT 13 TBX20_TBX_full_dimeric_16_1 SELEX + 3058486 3058501 0.0E+00 AGGTGTTAAAGTGCCA 16 TBX2_TBX_full_monomeric_11_1 SELEX + 3058485 3058495 2.0E-06 GAGGTGTTAAA 11 Pou5f1_MA0142.1 JASPAR - 3058534 3058548 0.0E+00 CATTGATATGGAAAA 15 Myf_MA0055.1 JASPAR + 3065009 3065020 4.0E-06 CAGCAGCAGCAG 12 PPARG_MA0066.1 JASPAR - 3058116 3058135 0.0E+00 CAAGGGCAGAGTCACCCACT 20 TBX20_TBX_DBD_monomeric_15_1 SELEX + 3058482 3058496 7.0E-06 CTGGAGGTGTTAAAG 15 Sox3_HMG_DBD_dimeric_17_3 SELEX + 3058541 3058557 7.0E-06 TATCAATGGCATTCCAG 17 Zfp740_C2H2_DBD_monomeric_10_1 SELEX + 3060206 3060215 7.0E-06 ACCCCCCCAT 10 POU3F2_POU_DBD_monomeric_12_1 SELEX + 3066303 3066314 7.0E-06 GAATGCAAATGA 12 ELF5_MA0136.1 JASPAR + 3058201 3058209 9.0E-06 AACTTCCTT 9 Sox2_MA0143.1 JASPAR + 3058499 3058513 6.0E-06 CCATTGAGATGGTAA 15 Sox2_MA0143.1 JASPAR - 3058535 3058549 0.0E+00 CCATTGATATGGAAA 15 V_TGIF_01_M00418 TRANSFAC - 3059996 3060006 2.0E-06 AGCTGTCAGGA 11 V_TCF3_01_M01594 TRANSFAC - 3066306 3066318 3.0E-06 TCTTTCATTTGCA 13 V_APOLYA_B_M00310 TRANSFAC + 3058490 3058504 8.0E-06 GTTAAAGTGCCATTG 15 V_TBX15_01_M01263 TRANSFAC + 3062284 3062302 4.0E-06 GGGTGGCAAGAGCGCACCT 19 V_OSF2_Q6_M00731 TRANSFAC - 3058217 3058224 1.0E-05 ACCACAAA 8 V_BACH2_01_M00490 TRANSFAC + 3059774 3059784 5.0E-06 GGTGAGTCACC 11 V_GATA2_02_M00348 TRANSFAC + 3066314 3066323 3.0E-06 AAAGATAACA 10 V_LRH1_Q5_01_M02098 TRANSFAC + 3066346 3066356 5.0E-06 GTCCAAGGCCA 11 V_POU5F1_02_M02245 TRANSFAC - 3058534 3058548 0.0E+00 CATTGATATGGAAAA 15 V_IK_Q5_M01169 TRANSFAC - 3058643 3058652 8.0E-06 GTTGGGAGGT 10 V_OCT1_Q5_01_M00930 TRANSFAC - 3066304 3066314 1.0E-06 TCATTTGCATT 11 V_EGR_Q6_M00807 TRANSFAC - 3058149 3058159 6.0E-06 GTGGGGGCAGC 11 V_POU2F3_01_M01476 TRANSFAC + 3066301 3066316 0.0E+00 CTGAATGCAAATGAAA 16 V_P50P50_Q3_M01223 TRANSFAC - 3059851 3059863 6.0E-06 GAGGGACATTCCC 13 V_P50P50_Q3_M01223 TRANSFAC + 3059962 3059974 6.0E-06 GGGGGACTTCCAG 13 V_PLAG1_02_M01973 TRANSFAC + 3058558 3058573 9.0E-06 TCCCTGATTAGGCCCC 16 V_P53_DECAMER_Q2_M00761 TRANSFAC + 3058872 3058881 7.0E-06 AGGCAAGTCC 10 V_MAF_Q6_M00648 TRANSFAC - 3058197 3058212 4.0E-06 AGGAAGGAAGTTACCA 16 V_MAF_Q6_M00648 TRANSFAC + 3062318 3062333 3.0E-06 TGGGGGGTAGTTTTCT 16 V_SP1_03_M02281 TRANSFAC + 3058431 3058440 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 3058466 3058475 3.0E-06 CCCCTCCCCC 10 V_OCT_C_M00210 TRANSFAC - 3066303 3066315 1.0E-06 TTCATTTGCATTC 13 V_NERF_Q2_M00531 TRANSFAC + 3058366 3058383 3.0E-06 CTCCAGGAAGGGACTGGT 18 V_SP1_02_M01303 TRANSFAC - 3060097 3060107 5.0E-06 GGGGTGGGGAG 11 V_LDSPOLYA_B_M00317 TRANSFAC + 3058808 3058823 5.0E-06 ATACTGTGTTTTATCT 16 V_TAL1_GATA1_01_M02243 TRANSFAC + 3066305 3066322 8.0E-06 ATGCAAATGAAAGATAAC 18 V_TRF1_01_M01237 TRANSFAC - 3058573 3058587 4.0E-06 GAAGGGTTAAGGTTG 15 V_MYF_01_M01302 TRANSFAC + 3065009 3065020 4.0E-06 CAGCAGCAGCAG 12 V_FKLF_Q5_M01837 TRANSFAC + 3058833 3058842 2.0E-06 GGGGTGGGAG 10 V_TBX18_01_M01262 TRANSFAC + 3062284 3062302 9.0E-06 GGGTGGCAAGAGCGCACCT 19 V_STAF_01_M00262 TRANSFAC + 3058588 3058609 1.0E-05 CTTTCCCAAGATCCAACTGAAT 22 V_ZBP89_Q4_M01816 TRANSFAC + 3058432 3058441 4.0E-06 CCCTCCCCCA 10 V_ZBP89_Q4_M01816 TRANSFAC - 3058465 3058474 4.0E-06 CCCTCCCCCA 10 V_OLF1_01_M00261 TRANSFAC + 3058944 3058965 1.0E-06 GGCTAGTCCCTGGAGTGTGGGC 22 V_MAZ_Q6_01_M02023 TRANSFAC - 3058396 3058409 4.0E-06 CTGGGAGGAAAGGA 14 V_YY1_Q6_02_M01035 TRANSFAC + 3060181 3060191 9.0E-06 ATGGCCATTTT 11 Tal1_Gata1_MA0140.1 JASPAR + 3066305 3066322 8.0E-06 ATGCAAATGAAAGATAAC 18 V_MUSCLE_INI_B_M00321 TRANSFAC - 3059950 3059970 8.0E-06 AAGTCCCCCCACCCAGCAGCC 21 V_PEBP_Q6_M00984 TRANSFAC - 3058214 3058228 7.0E-06 CCTGACCACAAAGGA 15 V_ZIC3_05_M02941 TRANSFAC - 3057933 3057947 1.0E-05 GTGCACAGCGGGAAG 15 V_RREB1_01_M00257 TRANSFAC + 3058154 3058167 2.0E-06 CCCCACACCCACCC 14 V_RREB1_01_M00257 TRANSFAC + 3060099 3060112 2.0E-06 CCCCACCCCAACCC 14 V_OCT4_02_M01124 TRANSFAC - 3058533 3058547 2.0E-06 ATTGATATGGAAAAG 15 V_TBX5_01_M01019 TRANSFAC + 3058484 3058495 3.0E-06 GGAGGTGTTAAA 12 V_OCT1_B_M00342 TRANSFAC + 3066304 3066313 5.0E-06 AATGCAAATG 10 V_OCT_Q6_M00795 TRANSFAC - 3066304 3066314 1.0E-06 TCATTTGCATT 11 V_NEUROD_02_M01288 TRANSFAC + 3059985 3059996 7.0E-06 TTGCTGCTGCCT 12 V_ZNF515_01_M01231 TRANSFAC + 3062317 3062326 2.0E-06 GTGGGGGGTA 10 V_LRH1_Q5_M01142 TRANSFAC - 3066346 3066357 1.0E-06 CTGGCCTTGGAC 12 V_GATA1_05_M00346 TRANSFAC + 3066314 3066323 5.0E-06 AAAGATAACA 10 V_MYOD_Q6_02_M02100 TRANSFAC - 3059999 3060007 4.0E-06 CAGCTGTCA 9 V_OCT2_01_M01368 TRANSFAC + 3066301 3066316 0.0E+00 CTGAATGCAAATGAAA 16 V_OCT1_Q6_M00195 TRANSFAC + 3066301 3066315 7.0E-06 CTGAATGCAAATGAA 15 V_GATA3_02_M00350 TRANSFAC + 3066314 3066323 3.0E-06 AAAGATAACA 10 V_PLAG1_01_M01778 TRANSFAC + 3058621 3058636 1.0E-06 GGGGCCTAGGAGAGGG 16 V_CDP_01_M00095 TRANSFAC + 3059837 3059848 6.0E-06 CCAATATTCAAG 12 V_GATA6_01_M00462 TRANSFAC + 3066314 3066323 6.0E-06 AAAGATAACA 10 V_TBX15_02_M01264 TRANSFAC + 3058486 3058503 8.0E-06 AGGTGTTAAAGTGCCATT 18 V_ASCL2_04_M02841 TRANSFAC + 3060095 3060110 6.0E-06 CTCTCCCCACCCCAAC 16 V_ETS1_B_M00339 TRANSFAC + 3058368 3058382 8.0E-06 CCAGGAAGGGACTGG 15 V_ZFP281_01_M01597 TRANSFAC - 3058431 3058441 1.0E-06 TGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 3058465 3058475 1.0E-06 TGGGGGAGGGG 11 V_MEF3_B_M00319 TRANSFAC - 3060115 3060127 5.0E-06 GGCTCAGATTTCA 13 V_EGR1_06_M02744 TRANSFAC + 3058161 3058174 2.0E-06 CCCACCCCCGCACT 14 V_TBX22_01_M01195 TRANSFAC + 3058486 3058504 1.0E-06 AGGTGTTAAAGTGCCATTG 19 V_TBX22_01_M01195 TRANSFAC - 3062284 3062302 8.0E-06 AGGTGCGCTCTTGCCACCC 19 V_MYF6_03_M02781 TRANSFAC - 3062371 3062386 9.0E-06 AGACGACAGGTGCCTG 16 V_SOX2_01_M02246 TRANSFAC + 3058499 3058513 6.0E-06 CCATTGAGATGGTAA 15 V_SOX2_01_M02246 TRANSFAC - 3058535 3058549 0.0E+00 CCATTGATATGGAAA 15 V_ZFP281_04_M02831 TRANSFAC + 3058429 3058443 0.0E+00 TTCCCCTCCCCCACC 15 V_ZFP281_04_M02831 TRANSFAC - 3058463 3058477 2.0E-06 GTCCCCTCCCCCATC 15 V_GATA2_03_M00349 TRANSFAC + 3066314 3066323 7.0E-06 AAAGATAACA 10 V_EWSR1FLI1_01_M02252 TRANSFAC - 3058198 3058215 9.0E-06 GAAAGGAAGGAAGTTACC 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 3058202 3058219 3.0E-06 AAAGGAAAGGAAGGAAGT 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 3058389 3058406 3.0E-06 GGAGGAAAGGAAGCCGGC 18 V_EFC_Q6_M00626 TRANSFAC - 3058535 3058548 6.0E-06 CATTGATATGGAAA 14 V_EKLF_Q5_M01874 TRANSFAC + 3058156 3058165 9.0E-06 CCACACCCAC 10 V_PPARG_02_M00515 TRANSFAC + 3058115 3058137 8.0E-06 CAGTGGGTGACTCTGCCCTTGGG 23 V_PPARG_02_M00515 TRANSFAC + 3058245 3058267 8.0E-06 AAGAGGCGCGGGTTAACCCACTT 23 V_UF1H3BETA_Q6_M01068 TRANSFAC - 3058430 3058443 0.0E+00 GGTGGGGGAGGGGA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 3058463 3058476 2.0E-06 GATGGGGGAGGGGA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 3060098 3060111 7.0E-06 GGTTGGGGTGGGGA 14 V_ELF5_04_M02241 TRANSFAC + 3058201 3058209 9.0E-06 AACTTCCTT 9 V_GFI1_Q6_01_M02010 TRANSFAC - 3060116 3060125 8.0E-06 CTCAGATTTC 10 V_PAX4_04_M00380 TRANSFAC - 3062303 3062332 3.0E-06 GAAAACTACCCCCCACTTCAACCTCAGCTC 30 V_GATA1_06_M00347 TRANSFAC + 3066314 3066323 1.0E-05 AAAGATAACA 10 V_OCT4_01_M01125 TRANSFAC - 3058534 3058548 1.0E-06 CATTGATATGGAAAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.