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TMEM41A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 90407 transmembrane protein 41A chr3 - 185216345 - 185221845 185216845 Transcription Factor Binding Sites   Download all TFBS in the TMEM41A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 185216114 185216131 4.0E-06 TAAATTATTCACGAATTA 18 DLX1_homeodomain_DBD_monomeric_10_1 SELEX - 185216108 185216117 8.0E-06 ATTAATTATC 10 NFIA_NFI_full_dimeric_15_1 SELEX + 185220960 185220974 6.0E-06 ATGGCAATTGGCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 185220960 185220974 6.0E-06 TTGGCCAATTGCCAT 15 Pax6_MA0069.1 JASPAR - 185216111 185216124 8.0E-06 TTCACGAATTAATT 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 185216114 185216130 8.0E-06 AAATTATTCACGAATTA 17 POU3F3_POU_DBD_monomeric_12_1 SELEX + 185216120 185216131 2.0E-06 GTGAATAATTTA 12 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 185221003 185221014 3.0E-06 ACCAAAAATAGC 12 POU3F2_POU_DBD_monomeric_13_1 SELEX + 185216119 185216131 2.0E-06 CGTGAATAATTTA 13 Dlx1_homeodomain_DBD_monomeric_8_1 SELEX + 185216109 185216116 4.0E-06 ATAATTAA 8 HNF1B_MA0153.1 JASPAR + 185215482 185215493 6.0E-06 TCACTGATTAAT 12 HNF1B_MA0153.1 JASPAR - 185215488 185215499 7.0E-06 CTCATGATTAAT 12 CUX1_CUT_DBD_dimeric_17_1 SELEX + 185215477 185215493 3.0E-06 ATCCATCACTGATTAAT 17 CUX1_CUT_DBD_dimeric_17_1 SELEX - 185215477 185215493 4.0E-06 ATTAATCAGTGATGGAT 17 NFIX_NFI_full_dimeric_15_2 SELEX + 185220960 185220974 2.0E-06 ATGGCAATTGGCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX - 185220960 185220974 1.0E-06 TTGGCCAATTGCCAT 15 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 185221003 185221014 9.0E-06 ACCAAAAATAGC 12 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX + 185216108 185216117 5.0E-06 GATAATTAAT 10 POU4F3_POU_DBD_monomeric_16_1 SELEX - 185216117 185216132 4.0E-06 TTAAATTATTCACGAA 16 MEF2B_MADS_full_dimeric_12_1 SELEX - 185221003 185221014 2.0E-06 ACCAAAAATAGC 12 MEF2A_MA0052.1 JASPAR + 185221004 185221013 8.0E-06 CTATTTTTGG 10 PAX3_PAX_DBD_dimeric_10_1 SELEX + 185216110 185216119 9.0E-06 TAATTAATTC 10 PAX3_PAX_DBD_dimeric_10_1 SELEX - 185216110 185216119 6.0E-06 GAATTAATTA 10 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 185216104 185216118 5.0E-06 AATTAATTATCGACT 15 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX + 185216108 185216117 7.0E-06 GATAATTAAT 10 SP1_MA0079.2 JASPAR + 185216912 185216921 7.0E-06 CCCCGCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 185215594 185215603 5.0E-06 AACAGCTGCC 10 DLX6_homeodomain_DBD_monomeric_8_1 SELEX + 185216109 185216116 9.0E-06 ATAATTAA 8 VAX1_homeodomain_DBD_monomeric_8_1 SELEX - 185216109 185216116 9.0E-06 TTAATTAT 8 SOX9_HMG_full_dimeric_16_3 SELEX - 185215481 185215496 2.0E-06 ATGATTAATCAGTGAT 16 Lhx3_MA0135.1 JASPAR - 185216107 185216119 1.0E-06 GAATTAATTATCG 13 Lhx3_MA0135.1 JASPAR + 185216110 185216122 4.0E-06 TAATTAATTCGTG 13 DLX3_homeodomain_DBD_monomeric_8_1 SELEX + 185216109 185216116 9.0E-06 ATAATTAA 8 HESX1_homeodomain_DBD_monomeric_10_1 SELEX + 185216108 185216117 6.0E-06 GATAATTAAT 10 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 185216114 185216131 3.0E-06 TAAATTATTCACGAATTA 18 POU1F1_POU_DBD_monomeric_17_1 SELEX - 185215483 185215499 7.0E-06 CTCATGATTAATCAGTG 17 POU1F1_POU_DBD_monomeric_17_1 SELEX + 185216117 185216133 2.0E-06 TTCGTGAATAATTTAAA 17 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 185216105 185216117 8.0E-06 GTCGATAATTAAT 13 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 185215604 185215618 7.0E-06 TTAATAGTCAAATAT 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 185215605 185215617 7.0E-06 TATTTGACTATTA 13 POU3F1_POU_DBD_monomeric_12_2 SELEX + 185216120 185216131 1.0E-06 GTGAATAATTTA 12 NFIB_NFI_full_dimeric_15_1 SELEX + 185220960 185220974 7.0E-06 ATGGCAATTGGCCAA 15 NFIB_NFI_full_dimeric_15_1 SELEX - 185220960 185220974 5.0E-06 TTGGCCAATTGCCAT 15 NR3C1_MA0113.1 JASPAR + 185220860 185220877 3.0E-06 AAAAAAGAAATGTCCTGA 18 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 185221507 185221517 8.0E-06 CTTCCCCACCC 11 IRF5_IRF_full_dimeric_14_1 SELEX + 185216532 185216545 6.0E-06 CCGATACCGGAACC 14 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 185216104 185216118 4.0E-06 AATTAATTATCGACT 15 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 185216114 185216131 4.0E-06 TAAATTATTCACGAATTA 18 POU4F1_POU_DBD_monomeric_14_1 SELEX - 185216119 185216132 9.0E-06 TTAAATTATTCACG 14 POU4F1_POU_DBD_monomeric_14_1 SELEX + 185216120 185216133 2.0E-06 GTGAATAATTTAAA 14 RREB1_MA0073.1 JASPAR + 185221510 185221529 5.0E-06 CCCCACCCCCACCCCAACCA 20 HNF1A_MA0046.1 JASPAR - 185216105 185216118 1.0E-05 AATTAATTATCGAC 14 DLX5_homeodomain_FL_monomeric_8_1 SELEX + 185216109 185216116 8.0E-06 ATAATTAA 8 IRF2_MA0051.1 JASPAR - 185217022 185217039 2.0E-06 GGAAAGCGACAGGGATAA 18 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 185220851 185220864 6.0E-06 AGAAACAGAAAAAA 14 V_CDP_03_M01342 TRANSFAC + 185215484 185215500 4.0E-06 ACTGATTAATCATGAGC 17 V_TST1_02_M01316 TRANSFAC - 185216106 185216122 4.0E-06 CACGAATTAATTATCGA 17 V_TST1_02_M01316 TRANSFAC + 185216107 185216123 4.0E-06 CGATAATTAATTCGTGA 17 V_DBX1_01_M01483 TRANSFAC + 185215608 185215624 1.0E-05 TAGTCAAATATCAGTAA 17 V_NF1_Q6_01_M00806 TRANSFAC - 185220958 185220974 7.0E-06 TTGGCCAATTGCCATGA 17 V_NF1A_Q6_M02103 TRANSFAC - 185220959 185220974 2.0E-06 TTGGCCAATTGCCATG 16 V_DLX3_01_M01400 TRANSFAC - 185216105 185216121 3.0E-06 ACGAATTAATTATCGAC 17 V_CREB_Q4_01_M00917 TRANSFAC + 185216188 185216198 9.0E-06 ACCTGACGTAA 11 V_MEF2_02_M00231 TRANSFAC - 185220999 185221020 1.0E-05 AGCACCACCAAAAATAGCTCCA 22 V_IRF_Q6_01_M00972 TRANSFAC + 185220852 185220862 6.0E-06 GAAACAGAAAA 11 V_IRF_Q6_01_M00972 TRANSFAC + 185220860 185220870 7.0E-06 AAAAAAGAAAT 11 V_ZFP740_03_M02834 TRANSFAC + 185221509 185221524 1.0E-05 TCCCCACCCCCACCCC 16 V_IRF2_Q6_M01882 TRANSFAC + 185220850 185220865 8.0E-06 GAGAAACAGAAAAAAA 16 V_HOXA4_01_M01370 TRANSFAC + 185216104 185216120 0.0E+00 AGTCGATAATTAATTCG 17 V_PLAG1_02_M01973 TRANSFAC - 185216248 185216263 3.0E-06 CCCCCGTGCGGGCCCC 16 V_CART1_02_M01362 TRANSFAC - 185216104 185216120 2.0E-06 CGAATTAATTATCGACT 17 V_HOXC4_01_M01369 TRANSFAC - 185216104 185216120 0.0E+00 CGAATTAATTATCGACT 17 V_CUX1_03_M02958 TRANSFAC + 185215484 185215500 4.0E-06 ACTGATTAATCATGAGC 17 V_SP1_03_M02281 TRANSFAC + 185216912 185216921 7.0E-06 CCCCGCCCCC 10 V_CREB_01_M00039 TRANSFAC + 185216191 185216198 1.0E-05 TGACGTAA 8 V_SPZ1_01_M00446 TRANSFAC - 185215498 185215512 8.0E-06 GTAGGAGGGTTTGCT 15 V_NKX61_03_M01489 TRANSFAC - 185216105 185216121 3.0E-06 ACGAATTAATTATCGAC 17 V_HOXC6_01_M01406 TRANSFAC - 185216104 185216120 2.0E-06 CGAATTAATTATCGACT 17 V_OCTAMER_02_M01477 TRANSFAC - 185216105 185216121 9.0E-06 ACGAATTAATTATCGAC 17 V_OCTAMER_02_M01477 TRANSFAC + 185216108 185216124 1.0E-06 GATAATTAATTCGTGAA 17 V_LHX3_01_M01471 TRANSFAC - 185216104 185216120 8.0E-06 CGAATTAATTATCGACT 17 V_LHX3_01_M01471 TRANSFAC + 185216105 185216121 9.0E-06 GTCGATAATTAATTCGT 17 V_SP1_02_M01303 TRANSFAC + 185216201 185216211 5.0E-06 GGGGTGGGGAG 11 V_SP1_02_M01303 TRANSFAC - 185216910 185216920 8.0E-06 GGGGCGGGGGC 11 V_COUPTF_Q6_M01036 TRANSFAC - 185220911 185220933 1.0E-05 CTCCATGGACTCTGACACTTGCC 23 V_LHX3A_01_M00510 TRANSFAC - 185216109 185216118 1.0E-06 AATTAATTAT 10 V_AP4_Q6_01_M00927 TRANSFAC + 185215594 185215602 1.0E-05 AACAGCTGC 9 V_K2B_01_M01348 TRANSFAC - 185216104 185216120 2.0E-06 CGAATTAATTATCGACT 17 V_K2B_01_M01348 TRANSFAC + 185216105 185216121 5.0E-06 GTCGATAATTAATTCGT 17 V_BRN2_01_M00145 TRANSFAC - 185215484 185215499 8.0E-06 CTCATGATTAATCAGT 16 V_NR3C1_01_M02219 TRANSFAC + 185220860 185220877 3.0E-06 AAAAAAGAAATGTCCTGA 18 V_TCFAP2E_04_M02926 TRANSFAC + 185220853 185220866 6.0E-06 AAACAGAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC + 185220854 185220867 2.0E-06 AACAGAAAAAAAGA 14 V_VSX1_01_M01335 TRANSFAC - 185216104 185216120 0.0E+00 CGAATTAATTATCGACT 17 V_NKX62_Q2_M00489 TRANSFAC - 185216108 185216119 1.0E-06 GAATTAATTATC 12 V_BCL6_02_M01185 TRANSFAC - 185220879 185220892 3.0E-06 GTCTTTCTTGGGCT 14 V_HMGA2_01_M01300 TRANSFAC + 185216114 185216128 7.0E-06 TAATTCGTGAATAAT 15 V_ZNF219_01_M01122 TRANSFAC + 185221513 185221524 8.0E-06 CACCCCCACCCC 12 V_GC_01_M00255 TRANSFAC - 185216889 185216902 9.0E-06 AGGAGGTGGGGCCT 14 V_EN1_02_M01365 TRANSFAC - 185216106 185216121 3.0E-06 ACGAATTAATTATCGA 16 V_PR_Q2_M00960 TRANSFAC + 185221362 185221371 9.0E-06 AAAAGAACAG 10 V_DBX2_01_M01360 TRANSFAC + 185216104 185216119 9.0E-06 AGTCGATAATTAATTC 16 V_LMX1_01_M01409 TRANSFAC - 185216104 185216120 7.0E-06 CGAATTAATTATCGACT 17 V_HNF1_Q6_M00790 TRANSFAC + 185215486 185215503 8.0E-06 TGATTAATCATGAGCAAA 18 V_IRF2_01_M00063 TRANSFAC + 185216504 185216516 7.0E-06 GATAAGTGAACCT 13 V_KROX_Q6_M00982 TRANSFAC + 185221511 185221524 3.0E-06 CCCACCCCCACCCC 14 V_SP1_Q6_M00196 TRANSFAC - 185216910 185216922 9.0E-06 CGGGGGCGGGGGC 13 V_HNF1B_04_M02266 TRANSFAC + 185215482 185215493 6.0E-06 TCACTGATTAAT 12 V_HNF1B_04_M02266 TRANSFAC - 185215488 185215499 7.0E-06 CTCATGATTAAT 12 V_MAZ_Q6_01_M02023 TRANSFAC + 185216200 185216213 1.0E-06 TGGGGTGGGGAGGA 14 V_PMX2A_01_M01444 TRANSFAC - 185216106 185216121 6.0E-06 ACGAATTAATTATCGA 16 V_IRF_Q6_M00772 TRANSFAC - 185220852 185220866 9.0E-06 CTTTTTTTCTGTTTC 15 V_NKX22_02_M01372 TRANSFAC + 185221464 185221480 1.0E-06 TAGAGCACTTGAAAAGA 17 V_PBX1_01_M00096 TRANSFAC + 185215488 185215496 1.0E-05 ATTAATCAT 9 V_PIT1_01_M01465 TRANSFAC - 185216106 185216122 2.0E-06 CACGAATTAATTATCGA 17 V_PIT1_01_M01465 TRANSFAC + 185216107 185216123 5.0E-06 CGATAATTAATTCGTGA 17 V_ZBRK1_01_M01105 TRANSFAC - 185216965 185216979 2.0E-06 GGGAGGCAGGTTTTT 15 V_OTP_01_M01323 TRANSFAC + 185216104 185216120 6.0E-06 AGTCGATAATTAATTCG 17 V_RREB1_01_M00257 TRANSFAC + 185221510 185221523 5.0E-06 CCCCACCCCCACCC 14 V_RREB1_01_M00257 TRANSFAC + 185221516 185221529 5.0E-06 CCCCACCCCAACCA 14 V_PAX8_01_M00717 TRANSFAC + 185216111 185216125 9.0E-06 AATTAATTCGTGAAT 15 V_MEF2_Q6_01_M00941 TRANSFAC + 185221002 185221013 2.0E-06 AGCTATTTTTGG 12 V_HB24_01_M01399 TRANSFAC + 185216107 185216121 7.0E-06 CGATAATTAATTCGT 15 V_HB24_01_M01399 TRANSFAC - 185216108 185216122 3.0E-06 CACGAATTAATTATC 15 V_POU6F1_01_M00465 TRANSFAC - 185216109 185216119 3.0E-06 GAATTAATTAT 11 V_PMX2B_01_M01356 TRANSFAC + 185216104 185216120 6.0E-06 AGTCGATAATTAATTCG 17 V_PMX2B_01_M01356 TRANSFAC - 185216105 185216121 3.0E-06 ACGAATTAATTATCGAC 17 V_LHX3b_01_M01971 TRANSFAC - 185216109 185216118 1.0E-06 AATTAATTAT 10 V_NKX63_01_M01470 TRANSFAC - 185216105 185216121 7.0E-06 ACGAATTAATTATCGAC 17 V_NKX23_01_M01457 TRANSFAC + 185221462 185221477 9.0E-06 CCTAGAGCACTTGAAA 16 V_LIM1_01_M01418 TRANSFAC - 185216104 185216120 3.0E-06 CGAATTAATTATCGACT 17 V_PAX8_B_M00328 TRANSFAC + 185216110 185216127 5.0E-06 TAATTAATTCGTGAATAA 18 V_FOXO1_Q5_M01216 TRANSFAC - 185217007 185217015 8.0E-06 AAAAACAAG 9 V_HOXB4_01_M01424 TRANSFAC - 185216104 185216120 2.0E-06 CGAATTAATTATCGACT 17 V_SP4_Q5_M01273 TRANSFAC + 185216911 185216921 5.0E-06 CCCCCGCCCCC 11 V_DLX7_01_M01486 TRANSFAC - 185216105 185216121 1.0E-06 ACGAATTAATTATCGAC 17 V_HOXA7_02_M01336 TRANSFAC - 185216104 185216120 5.0E-06 CGAATTAATTATCGACT 17 V_S8_01_M00099 TRANSFAC - 185216106 185216121 1.0E-06 ACGAATTAATTATCGA 16 V_ZIC2_05_M02940 TRANSFAC + 185220934 185220948 3.0E-06 AAACCCAGCAGGGAA 15 V_GABPBETA_Q3_M01876 TRANSFAC - 185216592 185216602 1.0E-05 AGAGGAAGGGA 11 V_CREBP1_Q2_M00179 TRANSFAC + 185216189 185216200 3.0E-06 CCTGACGTAAGT 12 V_BRN4_01_M01473 TRANSFAC - 185216106 185216122 3.0E-06 CACGAATTAATTATCGA 17 V_BRN4_01_M01473 TRANSFAC + 185216107 185216123 8.0E-06 CGATAATTAATTCGTGA 17 V_ATF2_Q5_M01862 TRANSFAC + 185216188 185216199 8.0E-06 ACCTGACGTAAG 12 V_MSX1_02_M01412 TRANSFAC + 185216104 185216119 8.0E-06 AGTCGATAATTAATTC 16 V_CREB_Q2_M00177 TRANSFAC + 185216189 185216200 6.0E-06 CCTGACGTAAGT 12 V_FPM315_01_M01587 TRANSFAC + 185216205 185216216 6.0E-06 TGGGGAGGAGGA 12 V_MYB_Q3_M00773 TRANSFAC + 185216216 185216226 7.0E-06 AGAGACAGTTG 11 V_ASCL2_04_M02841 TRANSFAC - 185216198 185216213 6.0E-06 TCCTCCCCACCCCACT 16 V_IRF6_04_M02874 TRANSFAC + 185215524 185215538 8.0E-06 GTTTCTCTCGGTATG 15 V_BARX2_01_M01431 TRANSFAC - 185216104 185216119 8.0E-06 GAATTAATTATCGACT 16 V_SMAD_Q6_01_M00974 TRANSFAC - 185221112 185221122 0.0E+00 TAGGCAGACAG 11 V_ZFP281_01_M01597 TRANSFAC - 185221510 185221520 1.0E-06 TGGGGGTGGGG 11 V_HOXC5_01_M01454 TRANSFAC - 185216104 185216120 0.0E+00 CGAATTAATTATCGACT 17 V_IRF1_Q6_01_M01881 TRANSFAC - 185215584 185215597 8.0E-06 TGTTTTCAGTTACT 14 V_IRF1_Q6_01_M01881 TRANSFAC - 185220851 185220864 5.0E-06 TTTTTTCTGTTTCT 14 V_ZFP281_04_M02831 TRANSFAC + 185221508 185221522 1.0E-06 TTCCCCACCCCCACC 15 V_EFC_Q6_M00626 TRANSFAC - 185221396 185221409 8.0E-06 AAATGCCAGGCTAA 14 V_HOXD8_01_M01432 TRANSFAC - 185216103 185216119 2.0E-06 GAATTAATTATCGACTC 17 V_SMAD3_Q6_M00701 TRANSFAC + 185221113 185221121 1.0E-05 TGTCTGCCT 9 V_LHX9_01_M01367 TRANSFAC - 185216104 185216120 2.0E-06 CGAATTAATTATCGACT 17 V_LHX9_01_M01367 TRANSFAC + 185216105 185216121 9.0E-06 GTCGATAATTAATTCGT 17 V_CTF1_01_M01196 TRANSFAC - 185220960 185220973 9.0E-06 TGGCCAATTGCCAT 14 V_CTF1_01_M01196 TRANSFAC + 185220961 185220974 2.0E-06 TGGCAATTGGCCAA 14 V_MEF2_01_M00006 TRANSFAC - 185221000 185221015 7.0E-06 CACCAAAAATAGCTCC 16 V_SP1_Q2_01_M00933 TRANSFAC + 185216912 185216921 4.0E-06 CCCCGCCCCC 10 V_FOXO4_01_M00472 TRANSFAC - 185217005 185217015 5.0E-06 AAAAACAAGCA 11 V_UF1H3BETA_Q6_M01068 TRANSFAC - 185221509 185221522 0.0E+00 GGTGGGGGTGGGGA 14 V_LHX5_01_M01353 TRANSFAC - 185216104 185216120 6.0E-06 CGAATTAATTATCGACT 17 V_DLX1_01_M01439 TRANSFAC - 185216108 185216121 3.0E-06 ACGAATTAATTATC 14 V_HNF1A_01_M02162 TRANSFAC - 185216105 185216118 1.0E-05 AATTAATTATCGAC 14 TLX1_NFIC_MA0119.1 JASPAR - 185220960 185220973 9.0E-06 TGGCCAATTGCCAT 14 TLX1_NFIC_MA0119.1 JASPAR + 185220961 185220974 2.0E-06 TGGCAATTGGCCAA 14 V_PAX6_01_M00097 TRANSFAC - 185216108 185216128 1.0E-06 ATTATTCACGAATTAATTATC 21 V_AP2_Q3_M00800 TRANSFAC - 185216659 185216674 5.0E-06 CCCCGCGGGCGGAGAC 16 V_NANOG_02_M01247 TRANSFAC + 185220849 185220868 2.0E-06 TGAGAAACAGAAAAAAAGAA 20 V_HOXC8_01_M01321 TRANSFAC - 185216106 185216121 9.0E-06 ACGAATTAATTATCGA 16 V_TCF4_01_M01705 TRANSFAC + 185220992 185221000 5.0E-06 CCTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.