Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CCNT1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 904 cyclin T1 chr12 - 49110281 - 49115781 49110781 Transcription Factor Binding Sites   Download all TFBS in the CCNT1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Egr1_MA0162.1 JASPAR - 49110852 49110862 4.0E-06 CGCGTGGGCGG 11 GABPA_MA0062.2 JASPAR - 49110626 49110636 9.0E-06 CCGGAAGTAGG 11 IRF7_IRF_DBD_dimeric_14_1 SELEX + 49111250 49111263 1.0E-05 TTGAAAGAGAAAGT 14 IRF7_IRF_DBD_dimeric_14_1 SELEX + 49111276 49111289 2.0E-06 CAGAAACTGAAAAA 14 SPIC_ETS_full_monomeric_14_1 SELEX + 49111251 49111264 2.0E-06 TGAAAGAGAAAGTA 14 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 49110613 49110621 2.0E-06 AAAAGTCAA 9 ELF4_ETS_full_monomeric_12_1 SELEX - 49110628 49110639 3.0E-06 ATTCCGGAAGTA 12 IRF8_IRF_full_dimeric_14_1 SELEX + 49111250 49111263 6.0E-06 TTGAAAGAGAAAGT 14 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 49110717 49110726 2.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 49110717 49110726 2.0E-06 GTCACGTGAC 10 ZNF238_C2H2_full_monomeric_13_1 SELEX + 49110398 49110410 6.0E-06 TTTCCAGCTGTTC 13 E2F7_E2F_DBD_dimeric_14_1 SELEX + 49110775 49110788 1.0E-05 TCTTCCCGCGAGAA 14 USF1_bHLH_DBD_dimeric_10_1 SELEX - 49110717 49110726 3.0E-06 GTCACGTGAC 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 49110717 49110726 1.0E-06 GTCACGTGAC 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 49110717 49110726 1.0E-06 GTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 49110717 49110726 3.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX + 49110717 49110726 3.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX - 49110717 49110726 3.0E-06 GTCACGTGAC 10 ETV4_ETS_DBD_monomeric_10_1 SELEX - 49110628 49110637 5.0E-06 TCCGGAAGTA 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 49110717 49110726 3.0E-06 GTCACGTGAC 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 49110717 49110726 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX + 49110717 49110726 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX - 49110717 49110726 3.0E-06 GTCACGTGAC 10 Foxd3_MA0041.1 JASPAR - 49111214 49111225 3.0E-06 TTTTATTTTTTT 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 49111251 49111265 0.0E+00 TGAAAGAGAAAGTAG 15 ELK1_ETS_full_monomeric_10_1 SELEX - 49110628 49110637 9.0E-06 TCCGGAAGTA 10 EHF_ETS_full_monomeric_12_1 SELEX - 49110628 49110639 6.0E-06 ATTCCGGAAGTA 12 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 49110717 49110726 4.0E-06 GTCACGTGAC 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 49110717 49110726 4.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 49110717 49110726 8.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 49110717 49110726 8.0E-06 GTCACGTGAC 10 ELF1_ETS_full_monomeric_12_1 SELEX - 49110628 49110639 5.0E-06 ATTCCGGAAGTA 12 ELF3_ETS_DBD_monomeric_12_1 SELEX - 49110628 49110639 1.0E-05 ATTCCGGAAGTA 12 Elk3_ETS_DBD_monomeric_10_1 SELEX - 49110628 49110637 9.0E-06 TCCGGAAGTA 10 EGR2_C2H2_DBD_monomeric_11_1 SELEX + 49110852 49110862 6.0E-06 CCGCCCACGCG 11 ZNF410_C2H2_DBD_monomeric_17_1 SELEX - 49110831 49110847 9.0E-06 CCCATCCCACTATAATT 17 ETV6_ETS_full_monomeric_10_1 SELEX - 49110560 49110569 6.0E-06 AGCGGAAGTT 10 REST_MA0138.2 JASPAR - 49110305 49110325 3.0E-06 TTCAGGACATGGGGCAGCGTC 21 IRF3_IRF_full_trimeric_21_1 SELEX + 49111244 49111264 6.0E-06 ATGAACTTGAAAGAGAAAGTA 21 MLX_bHLH_full_dimeric_10_1 SELEX + 49110717 49110726 5.0E-06 GTCACGTGAC 10 MLX_bHLH_full_dimeric_10_1 SELEX - 49110717 49110726 5.0E-06 GTCACGTGAC 10 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 49111214 49111226 3.0E-06 AAAAAAATAAAAT 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 49111223 49111235 1.0E-06 AAATAAGTAAAAA 13 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 49110717 49110726 1.0E-06 GTCACGTGAC 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 49110717 49110726 1.0E-06 GTCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 49110717 49110726 2.0E-06 GTCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 49110717 49110726 2.0E-06 GTCACGTGAC 10 GLIS2_C2H2_DBD_monomeric_14_1 SELEX + 49110216 49110229 9.0E-06 TCCCCCCCACAGAG 14 Zfx_MA0146.1 JASPAR - 49110276 49110289 7.0E-06 GTGGCCTAGGCCTT 14 V_HOXA9_01_M01351 TRANSFAC + 49111214 49111230 1.0E-05 AAAAAAATAAAATAAGT 17 V_FOXP1_01_M00987 TRANSFAC - 49111213 49111232 5.0E-06 TTACTTATTTTATTTTTTTG 20 V_FOXP1_01_M00987 TRANSFAC - 49111279 49111298 3.0E-06 TTGATTCTGTTTTTCAGTTT 20 V_HNF3B_01_M00131 TRANSFAC - 49111218 49111232 8.0E-06 TTACTTATTTTATTT 15 V_DBX1_01_M01483 TRANSFAC + 49111222 49111238 1.0E-05 AAAATAAGTAAAAATGT 17 V_USF_Q6_M00187 TRANSFAC + 49110717 49110726 4.0E-06 GTCACGTGAC 10 V_USF_Q6_M00187 TRANSFAC - 49110717 49110726 4.0E-06 GTCACGTGAC 10 V_TCF3_01_M01594 TRANSFAC - 49110043 49110055 6.0E-06 GCTTTGTGTTTTA 13 V_ARNT_02_M00539 TRANSFAC + 49110712 49110731 2.0E-06 GGCGCGTCACGTGACCGTTG 20 V_ARNT_02_M00539 TRANSFAC - 49110712 49110731 2.0E-06 CAACGGTCACGTGACGCGCC 20 V_HMGIY_Q3_M01010 TRANSFAC - 49111212 49111226 0.0E+00 ATTTTATTTTTTTGA 15 V_EVI1_04_M00081 TRANSFAC + 49111218 49111232 1.0E-06 AAATAAAATAAGTAA 15 V_FOXD3_01_M00130 TRANSFAC - 49111214 49111225 3.0E-06 TTTTATTTTTTT 12 V_BCL6_01_M01183 TRANSFAC - 49111217 49111232 0.0E+00 TTACTTATTTTATTTT 16 V_HOXA13_02_M01297 TRANSFAC + 49111218 49111226 4.0E-06 AAATAAAAT 9 V_IRF_Q6_01_M00972 TRANSFAC + 49111252 49111262 3.0E-06 GAAAGAGAAAG 11 V_IRF_Q6_01_M00972 TRANSFAC + 49111278 49111288 2.0E-06 GAAACTGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC + 49111250 49111265 1.0E-06 TTGAAAGAGAAAGTAG 16 V_IRF2_Q6_M01882 TRANSFAC + 49111276 49111291 8.0E-06 CAGAAACTGAAAAACA 16 V_FOXO3A_Q1_M01137 TRANSFAC + 49111215 49111226 5.0E-06 AAAAAATAAAAT 12 V_EGR1_02_M01972 TRANSFAC - 49110852 49110862 6.0E-06 CGCGTGGGCGG 11 V_PU1_Q4_M01172 TRANSFAC + 49110433 49110451 8.0E-06 TTGTTGTTCTTCCTCTCTC 19 V_TCFAP2E_04_M02926 TRANSFAC + 49111209 49111222 3.0E-06 GTCTCAAAAAAATA 14 V_CDX_Q5_M00991 TRANSFAC + 49111216 49111233 1.0E-06 AAAAATAAAATAAGTAAA 18 V_SPIC_01_M02042 TRANSFAC - 49110560 49110569 9.0E-06 AGCGGAAGTT 10 V_ELF4_04_M02850 TRANSFAC + 49111209 49111225 5.0E-06 GTCTCAAAAAAATAAAA 17 V_ELF4_04_M02850 TRANSFAC + 49111210 49111226 0.0E+00 TCTCAAAAAAATAAAAT 17 V_ELF4_04_M02850 TRANSFAC + 49111212 49111228 4.0E-06 TCAAAAAAATAAAATAA 17 V_TAL1_Q6_M00993 TRANSFAC + 49110400 49110409 7.0E-06 TCCAGCTGTT 10 V_FOXA2_02_M02853 TRANSFAC + 49111216 49111230 6.0E-06 AAAAATAAAATAAGT 15 V_ZFP105_03_M02827 TRANSFAC + 49111215 49111229 1.0E-06 AAAAAATAAAATAAG 15 V_SREBP1_01_M00220 TRANSFAC + 49110716 49110726 5.0E-06 CGTCACGTGAC 11 V_SREBP1_01_M00220 TRANSFAC - 49110717 49110727 5.0E-06 GGTCACGTGAC 11 V_STAF_01_M00262 TRANSFAC + 49110628 49110649 4.0E-06 TACTTCCGGAATGCACCTCGCT 22 V_KROX_Q6_M00982 TRANSFAC + 49110851 49110864 5.0E-06 GCCGCCCACGCGCC 14 V_FOXK1_04_M02856 TRANSFAC + 49107822 49107836 3.0E-06 CATACCACAACACCC 15 V_FOXK1_04_M02856 TRANSFAC - 49110428 49110442 1.0E-06 AGAACAACAACAAAC 15 V_IRF3_Q3_M01279 TRANSFAC - 49110608 49110620 9.0E-06 TGACTTTTGCTTC 13 V_EGR1_Q6_M01873 TRANSFAC - 49110852 49110861 7.0E-06 GCGTGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC - 49111252 49111266 1.0E-06 CCTACTTTCTCTTTC 15 V_IRF_Q6_M00772 TRANSFAC - 49111278 49111292 6.0E-06 CTGTTTTTCAGTTTC 15 V_ASCL2_03_M02737 TRANSFAC + 49107787 49107803 1.0E-05 CTTGCCAGCTGCTGGAG 17 V_SOX12_04_M02900 TRANSFAC - 49110355 49110370 3.0E-06 ACCCAGATAAAGAACT 16 V_GRE_C_M00205 TRANSFAC + 49110397 49110412 4.0E-06 TTTTCCAGCTGTTCTC 16 V_TEL2_Q6_M00678 TRANSFAC + 49110627 49110636 6.0E-06 CTACTTCCGG 10 V_NKX3A_01_M00451 TRANSFAC + 49111223 49111234 2.0E-06 AAATAAGTAAAA 12 V_CETS1P54_01_M00032 TRANSFAC - 49110628 49110637 1.0E-05 TCCGGAAGTA 10 V_OCT4_02_M01124 TRANSFAC - 49111247 49111261 5.0E-06 TTTCTCTTTCAAGTT 15 V_ISGF4G_04_M02875 TRANSFAC + 49111284 49111297 7.0E-06 GAAAAACAGAATCA 14 V_ICSBP_Q6_M00699 TRANSFAC + 49111253 49111264 3.0E-06 AAAGAGAAAGTA 12 V_FOXO1_Q5_M01216 TRANSFAC + 49111285 49111293 1.0E-05 AAAAACAGA 9 V_CETS1P54_03_M01078 TRANSFAC - 49110625 49110640 2.0E-06 CATTCCGGAAGTAGGT 16 V_HOXD9_Q2_M01834 TRANSFAC - 49111398 49111407 3.0E-06 ACACATTAAA 10 V_NEUROD_02_M01288 TRANSFAC + 49110399 49110410 6.0E-06 TTCCAGCTGTTC 12 V_MTF1_06_M02882 TRANSFAC + 49111216 49111229 6.0E-06 AAAAATAAAATAAG 14 V_MTF1_06_M02882 TRANSFAC + 49111223 49111236 8.0E-06 AAATAAGTAAAAAT 14 V_STRA13_01_M00985 TRANSFAC + 49110715 49110728 1.0E-06 GCGTCACGTGACCG 14 V_STRA13_01_M00985 TRANSFAC - 49110715 49110728 1.0E-05 CGGTCACGTGACGC 14 V_TFEB_01_M01768 TRANSFAC + 49110717 49110726 3.0E-06 GTCACGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 49110717 49110726 3.0E-06 GTCACGTGAC 10 V_FOXL1_02_M02857 TRANSFAC + 49111217 49111232 1.0E-05 AAAATAAAATAAGTAA 16 V_FOXL1_04_M02753 TRANSFAC + 49111220 49111236 7.0E-06 ATAAAATAAGTAAAAAT 17 V_MYOGNF1_01_M00056 TRANSFAC - 49110363 49110391 1.0E-05 CATCCCGTCGTTTTGGCGTGGACCCAGAT 29 V_PADS_C_M00211 TRANSFAC - 49107809 49107817 4.0E-06 TGTGGTCTC 9 V_TBX15_02_M01264 TRANSFAC + 49110403 49110420 8.0E-06 AGCTGTTCTCGAGTGAAA 18 V_REST_02_M02256 TRANSFAC - 49110305 49110325 3.0E-06 TTCAGGACATGGGGCAGCGTC 21 V_IRF1_Q6_01_M01881 TRANSFAC - 49111251 49111264 1.0E-06 TACTTTCTCTTTCA 14 V_IRF1_Q6_01_M01881 TRANSFAC - 49111277 49111290 5.0E-06 GTTTTTCAGTTTCT 14 V_SRF_06_M02916 TRANSFAC + 49111210 49111226 5.0E-06 TCTCAAAAAAATAAAAT 17 V_SRF_06_M02916 TRANSFAC + 49111211 49111227 6.0E-06 CTCAAAAAAATAAAATA 17 V_SRF_06_M02916 TRANSFAC + 49111212 49111228 2.0E-06 TCAAAAAAATAAAATAA 17 V_HOXD10_01_M01375 TRANSFAC + 49111214 49111230 1.0E-05 AAAAAAATAAAATAAGT 17 V_ARID5A_04_M02840 TRANSFAC + 49111219 49111235 8.0E-06 AATAAAATAAGTAAAAA 17 V_NR2F2_04_M02887 TRANSFAC + 49110805 49110820 3.0E-06 CGCCCCGGGTCAGGCT 16 V_PAX4_04_M00380 TRANSFAC - 49110733 49110762 8.0E-06 AAGAAAGAACTTCTAACCCCACTCCACCGC 30 V_DMRT5_01_M01150 TRANSFAC - 49111286 49111300 5.0E-06 ATTTGATTCTGTTTT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.