Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KLHL13 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 90293 kelch-like family member 13 chrX - 117250328 - 117256303 117250828 Transcription Factor Binding Sites   Download all TFBS in the KLHL13 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 117251944 117251956 4.0E-06 GAAAACATAAAGA 13 Pax4_MA0068.1 JASPAR - 117251927 117251956 2.0E-06 GAAAACATAAAGATTCCACACTCACCGCAT 30 Spz1_MA0111.1 JASPAR + 117251754 117251764 8.0E-06 ACGGTTACAGC 11 TCF7L1_HMG_full_monomeric_12_1 SELEX - 117251790 117251801 6.0E-06 AAAGGGCAAAGG 12 ZNF740_C2H2_full_monomeric_10_1 SELEX - 117250827 117250836 3.0E-06 CCCCCCCCAC 10 FOXI1_MA0042.1 JASPAR - 117251284 117251295 6.0E-06 TGATATTTGTGT 12 ZIC3_C2H2_full_monomeric_15_1 SELEX + 117250561 117250575 8.0E-06 TCCCTCCTGCTGCGA 15 YY2_C2H2_full_monomeric_11_1 SELEX - 117250855 117250865 8.0E-06 GCCGCCATGTT 11 SOX7_HMG_full_dimeric_16_1 SELEX + 117251077 117251092 1.0E-05 AAAAGTGAAAAGTGTC 16 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 117247538 117247554 9.0E-06 ACATTCCCGAGATAACA 17 Zfp740_C2H2_DBD_monomeric_10_1 SELEX - 117250772 117250781 1.0E-05 GCCCCCCCAC 10 Zfp740_C2H2_DBD_monomeric_10_1 SELEX - 117250827 117250836 5.0E-06 CCCCCCCCAC 10 HMBOX1_homeodomain_DBD_monomeric_10_1 SELEX + 117249525 117249534 7.0E-06 CTTAGTTACC 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 117251944 117251956 5.0E-06 GAAAACATAAAGA 13 IRX5_homeodomain_DBD_dimeric_12_1 SELEX + 117251342 117251353 9.0E-06 GTACACAACATT 12 V_FOXP1_01_M00987 TRANSFAC + 117251870 117251889 7.0E-06 CTATTGTGATTTTTTTTCTT 20 V_FOXP1_01_M00987 TRANSFAC + 117251879 117251898 7.0E-06 TTTTTTTTCTTTGGCTGTTT 20 V_FOXP1_01_M00987 TRANSFAC + 117251943 117251962 0.0E+00 ATCTTTATGTTTTCTAGGAT 20 V_HSF2_01_M00147 TRANSFAC + 117247548 117247557 1.0E-05 GGAATGTTCT 10 V_HSF2_01_M00147 TRANSFAC + 117250039 117250048 8.0E-06 AGAAGATTCT 10 V_HSF2_01_M00147 TRANSFAC - 117250039 117250048 4.0E-06 AGAATCTTCT 10 V_XVENT1_01_M00445 TRANSFAC - 117251284 117251296 8.0E-06 GTGATATTTGTGT 13 V_APOLYA_B_M00310 TRANSFAC + 117251833 117251847 5.0E-06 AATAAAGGGAGTTTG 15 V_FLI1_Q6_M01208 TRANSFAC + 117251918 117251928 5.0E-06 AAGGAAGTGAT 11 V_FOXJ2_02_M00423 TRANSFAC - 117246014 117246027 7.0E-06 GACTTAATAGTTGT 14 V_FOXJ2_02_M00423 TRANSFAC - 117251866 117251879 3.0E-06 ATCACAATAGTGAT 14 V_IRF_Q6_01_M00972 TRANSFAC + 117251077 117251087 0.0E+00 AAAAGTGAAAA 11 V_ZFP740_03_M02834 TRANSFAC - 117250824 117250839 6.0E-06 CTCCCCCCCCCACTGC 16 V_ZFP740_03_M02834 TRANSFAC - 117250825 117250840 6.0E-06 GCTCCCCCCCCCACTG 16 V_IRF2_Q6_M01882 TRANSFAC + 117251075 117251090 7.0E-06 GAAAAAGTGAAAAGTG 16 V_PU1_Q4_M01172 TRANSFAC + 117251895 117251913 2.0E-06 GTTTTTTTCTTCTTCTTCT 19 V_PU1_Q4_M01172 TRANSFAC + 117251898 117251916 2.0E-06 TTTTTCTTCTTCTTCTTCT 19 V_PU1_Q4_M01172 TRANSFAC + 117251901 117251919 5.0E-06 TTCTTCTTCTTCTTCTTAA 19 V_TCFAP2E_04_M02926 TRANSFAC - 117251878 117251891 6.0E-06 CAAAGAAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC - 117251879 117251892 9.0E-06 CCAAAGAAAAAAAA 14 V_ZNF219_01_M01122 TRANSFAC - 117250788 117250799 0.0E+00 CGCCCCCCTCCC 12 V_SOX7_03_M02807 TRANSFAC - 117251863 117251884 2.0E-06 AAAAAATCACAATAGTGATTAA 22 V_GFI1_01_M00250 TRANSFAC - 117251865 117251888 2.0E-06 AGAAAAAAAATCACAATAGTGATT 24 V_MRF2_01_M00454 TRANSFAC - 117251867 117251880 7.0E-06 AATCACAATAGTGA 14 V_SP4_03_M02810 TRANSFAC - 117250788 117250804 1.0E-06 GTTCCCGCCCCCCTCCC 17 V_KROX_Q6_M00982 TRANSFAC - 117250788 117250801 1.0E-05 CCCGCCCCCCTCCC 14 V_MAZ_Q6_01_M02023 TRANSFAC + 117250810 117250823 2.0E-06 TGGGGAGGGAGGGG 14 V_RFXDC2_03_M02790 TRANSFAC + 117251847 117251861 7.0E-06 GCTCTTAGCAACCAG 15 V_ELF5_01_M01197 TRANSFAC + 117251916 117251926 1.0E-05 TTAAGGAAGTG 11 V_REX1_03_M01744 TRANSFAC + 117250855 117250866 2.0E-06 AACATGGCGGCG 12 V_SOX12_04_M02900 TRANSFAC - 117251883 117251898 7.0E-06 AAACAGCCAAAGAAAA 16 V_YY1_03_M02044 TRANSFAC - 117250854 117250865 5.0E-06 GCCGCCATGTTT 12 V_ZIC2_05_M02940 TRANSFAC - 117250563 117250577 2.0E-06 CCTCGCAGCAGGAGG 15 V_MTF1_06_M02882 TRANSFAC - 117251877 117251890 2.0E-06 AAAGAAAAAAAATC 14 V_MTF1_06_M02882 TRANSFAC - 117251896 117251909 4.0E-06 GAAGAAGAAAAAAA 14 V_HAND1E47_01_M00222 TRANSFAC - 117251810 117251825 6.0E-06 GGAGGAGTCTGGAATT 16 V_PLAG1_01_M01778 TRANSFAC + 117250821 117250836 2.0E-06 GGGGCAGTGGGGGGGG 16 V_ZFP206_01_M01742 TRANSFAC - 117250882 117250892 4.0E-06 CGCGCAGGCGC 11 V_IRF1_Q6_01_M01881 TRANSFAC - 117251076 117251089 1.0E-06 ACTTTTCACTTTTT 14 V_SRF_06_M02916 TRANSFAC - 117251875 117251891 1.0E-05 CAAAGAAAAAAAATCAC 17 V_SRF_06_M02916 TRANSFAC - 117251876 117251892 2.0E-06 CCAAAGAAAAAAAATCA 17 V_EKLF_Q5_M01874 TRANSFAC - 117250766 117250775 2.0E-06 CCACACCCTG 10 V_SOX2_Q6_M01272 TRANSFAC + 117251866 117251881 8.0E-06 ATCACTATTGTGATTT 16 V_RFX3_04_M02788 TRANSFAC + 117251843 117251865 0.0E+00 GTTTGCTCTTAGCAACCAGTTTA 23 V_MEF2_01_M00006 TRANSFAC + 117251255 117251270 1.0E-06 GTCTCAAAATAAGCCT 16 V_HMEF2_Q6_M00406 TRANSFAC + 117251255 117251270 6.0E-06 GTCTCAAAATAAGCCT 16 V_MAFK_04_M02880 TRANSFAC - 117251871 117251885 6.0E-06 AAAAAAATCACAATA 15 V_TCF3_05_M02920 TRANSFAC - 117251880 117251894 5.0E-06 AGCCAAAGAAAAAAA 15 V_PAX4_04_M00380 TRANSFAC - 117251872 117251901 0.0E+00 AAAAAACAGCCAAAGAAAAAAAATCACAAT 30 V_SMAD1_01_M01590 TRANSFAC - 117251897 117251908 7.0E-06 AAGAAGAAAAAA 12 V_ZIC1_05_M02939 TRANSFAC - 117250563 117250577 1.0E-06 CCTCGCAGCAGGAGG 15 V_AP2_Q3_M00800 TRANSFAC - 117251757 117251772 1.0E-06 GGCCCCAGGCTGTAAC 16 V_NANOG_02_M01247 TRANSFAC - 117251893 117251912 2.0E-06 GAAGAAGAAGAAAAAAACAG 20 V_T3RALPHA_Q6_M01724 TRANSFAC - 117250756 117250766 8.0E-06 GGTGAGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.