Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TRIM15 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 89870 tripartite motif containing 15 chr6 + 30125982 - 30131482 30130982 Transcription Factor Binding Sites   Download all TFBS in the TRIM15 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 30130736 30130753 4.0E-06 TAAATAAATAAATAAATA 18 POU4F2_POU_full_monomeric_16_1 SELEX + 30130739 30130754 7.0E-06 ATAAATAAATAAATAA 16 NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 30135035 30135043 8.0E-06 GCACTTGAA 9 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 30130743 30130755 3.0E-06 ATAAATAAATAAA 13 Egr1_MA0162.1 JASPAR - 30130926 30130936 9.0E-06 TGTGTGGGCGG 11 SOX10_HMG_full_dimeric_16_1 SELEX + 30130753 30130768 7.0E-06 AAAATAGTCCAGTGTT 16 POU3F3_POU_DBD_monomeric_12_1 SELEX + 30130743 30130754 1.0E-06 ATAAATAAATAA 12 POU3F3_POU_DBD_monomeric_12_1 SELEX + 30130747 30130758 7.0E-06 ATAAATAAAATA 12 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 30130741 30130754 1.0E-05 AAATAAATAAATAA 14 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 30130743 30130755 4.0E-06 ATAAATAAATAAA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 30130744 30130755 0.0E+00 TAAATAAATAAA 12 POU3F2_POU_DBD_monomeric_13_1 SELEX + 30130742 30130754 3.0E-06 AATAAATAAATAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX + 30130742 30130754 0.0E+00 AATAAATAAATAA 13 SOX8_HMG_DBD_dimeric_16_1 SELEX + 30130753 30130768 4.0E-06 AAAATAGTCCAGTGTT 16 POU3F4_POU_DBD_monomeric_11_1 SELEX + 30130744 30130754 7.0E-06 TAAATAAATAA 11 ZNF435_C2H2_full_dimeric_18_1 SELEX + 30130763 30130780 3.0E-06 AGTGTTACCCGAACCCCA 18 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 30130744 30130754 1.0E-06 TAAATAAATAA 11 STAT1_MA0137.2 JASPAR - 30131090 30131104 6.0E-06 GGTTTCCTGGAATCT 15 STAT1_MA0137.2 JASPAR - 30131394 30131408 4.0E-06 CCTTTCCCTGAAATC 15 Pax4_MA0068.1 JASPAR + 30130733 30130762 2.0E-06 AAATAAATAAATAAATAAATAAAATAGTCC 30 POU4F3_POU_DBD_monomeric_16_1 SELEX + 30130739 30130754 3.0E-06 ATAAATAAATAAATAA 16 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 30130743 30130753 0.0E+00 ATAAATAAATA 11 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 30130742 30130756 3.0E-06 AATAAATAAATAAAA 15 EGR2_C2H2_full_monomeric_15_1 SELEX + 30130924 30130938 9.0E-06 TCCCGCCCACACACT 15 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 30130742 30130755 1.0E-05 AATAAATAAATAAA 14 FOXI1_MA0042.1 JASPAR - 30130745 30130756 0.0E+00 TTTTATTTATTT 12 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX - 30131222 30131237 3.0E-06 GGGTCCAAATTCCAGG 16 ELK1_ETS_full_dimeric_17_1 SELEX + 30130935 30130951 3.0E-06 CACTTCCGGCAGAATCT 17 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 30130743 30130755 5.0E-06 ATAAATAAATAAA 13 Egr3_C2H2_DBD_monomeric_15_1 SELEX + 30130925 30130939 8.0E-06 CCCGCCCACACACTT 15 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 30130743 30130753 0.0E+00 ATAAATAAATA 11 EGR4_C2H2_DBD_monomeric_16_2 SELEX + 30130924 30130939 3.0E-06 TCCCGCCCACACACTT 16 NKX2-3_homeodomain_full_monomeric_10_1 SELEX - 30135035 30135044 7.0E-06 AGCACTTGAA 10 Foxd3_MA0041.1 JASPAR - 30130745 30130756 3.0E-06 TTTTATTTATTT 12 Stat3_MA0144.1 JASPAR + 30131093 30131102 1.0E-06 TTCCAGGAAA 10 POU3F1_POU_DBD_monomeric_12_2 SELEX + 30130743 30130754 1.0E-06 ATAAATAAATAA 12 POU3F1_POU_DBD_monomeric_12_2 SELEX + 30130747 30130758 3.0E-06 ATAAATAAAATA 12 GABPA_ETS_full_monomeric_10_1 SELEX - 30130935 30130944 9.0E-06 GCCGGAAGTG 10 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX - 30131115 30131134 1.0E-05 CAGAGCACACCATGAGGTCA 20 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 30130742 30130756 4.0E-06 AATAAATAAATAAAA 15 POU3F3_POU_DBD_dimeric_12_1 SELEX + 30130743 30130754 4.0E-06 ATAAATAAATAA 12 Hic1_C2H2_DBD_dimeric_18_1 SELEX + 30131498 30131515 9.0E-06 CTGCCTGCCTGTACCCTC 18 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 30130741 30130753 0.0E+00 AAATAAATAAATA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 30130745 30130757 1.0E-06 AAATAAATAAAAT 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 30130743 30130755 7.0E-06 ATAAATAAATAAA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 30130744 30130754 3.0E-06 TAAATAAATAA 11 POU4F1_POU_DBD_monomeric_14_1 SELEX + 30130743 30130756 5.0E-06 ATAAATAAATAAAA 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 30130742 30130755 3.0E-06 AATAAATAAATAAA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 30130743 30130756 3.0E-06 ATAAATAAATAAAA 14 V_FOXP1_01_M00987 TRANSFAC - 30130735 30130754 0.0E+00 TTATTTATTTATTTATTTAT 20 V_HNF3B_01_M00131 TRANSFAC - 30130740 30130754 0.0E+00 TTATTTATTTATTTA 15 V_HNF3B_01_M00131 TRANSFAC - 30130744 30130758 2.0E-06 TATTTTATTTATTTA 15 V_HNF3B_01_M00131 TRANSFAC - 30130749 30130763 6.0E-06 TGGACTATTTTATTT 15 V_STAT3_01_M00225 TRANSFAC + 30131391 30131411 9.0E-06 CTCGATTTCAGGGAAAGGGAA 21 V_TST1_02_M01316 TRANSFAC + 30130737 30130753 3.0E-06 AAATAAATAAATAAATA 17 V_TST1_02_M01316 TRANSFAC + 30130738 30130754 1.0E-05 AATAAATAAATAAATAA 17 V_TST1_02_M01316 TRANSFAC + 30130741 30130757 7.0E-06 AAATAAATAAATAAAAT 17 V_DBX1_01_M01483 TRANSFAC + 30130737 30130753 0.0E+00 AAATAAATAAATAAATA 17 V_DBX1_01_M01483 TRANSFAC - 30130737 30130753 1.0E-06 TATTTATTTATTTATTT 17 V_DBX1_01_M01483 TRANSFAC + 30130740 30130756 1.0E-06 TAAATAAATAAATAAAA 17 V_DBX1_01_M01483 TRANSFAC + 30130741 30130757 0.0E+00 AAATAAATAAATAAAAT 17 V_DBX1_01_M01483 TRANSFAC - 30130741 30130757 6.0E-06 ATTTTATTTATTTATTT 17 V_FREAC7_01_M00293 TRANSFAC + 30130738 30130753 0.0E+00 AATAAATAAATAAATA 16 V_FREAC7_01_M00293 TRANSFAC + 30130742 30130757 0.0E+00 AATAAATAAATAAAAT 16 V_AR_02_M00953 TRANSFAC + 30135141 30135167 4.0E-06 AAAGAACTGACAAACTGTTCTCGTTCA 27 V_GATA1_Q6_M02004 TRANSFAC + 30129136 30129150 5.0E-06 GGCTCAGATAAGGTC 15 V_XFD1_01_M00267 TRANSFAC + 30130744 30130757 0.0E+00 TAAATAAATAAAAT 14 V_FOXA2_04_M02749 TRANSFAC + 30130738 30130754 0.0E+00 AATAAATAAATAAATAA 17 V_FOXA2_04_M02749 TRANSFAC + 30130742 30130758 0.0E+00 AATAAATAAATAAAATA 17 V_EVI1_04_M00081 TRANSFAC + 30130744 30130758 1.0E-05 TAAATAAATAAAATA 15 V_FOXD3_01_M00130 TRANSFAC - 30130745 30130756 1.0E-06 TTTTATTTATTT 12 V_BCL6_01_M01183 TRANSFAC - 30130741 30130756 1.0E-06 TTTTATTTATTTATTT 16 V_HOXA13_02_M01297 TRANSFAC + 30130749 30130757 4.0E-06 AAATAAAAT 9 V_SATB1_Q3_M01723 TRANSFAC + 30130739 30130754 8.0E-06 ATAAATAAATAAATAA 16 V_GABP_B_M00341 TRANSFAC - 30130933 30130944 7.0E-06 GCCGGAAGTGTG 12 V_HNF4_Q6_M00967 TRANSFAC - 30130979 30130987 1.0E-05 AAAGTCCAG 9 V_FOXO3A_Q1_M01137 TRANSFAC + 30130742 30130753 1.0E-06 AATAAATAAATA 12 V_FOXO3A_Q1_M01137 TRANSFAC + 30130746 30130757 2.0E-06 AATAAATAAAAT 12 V_HNF3_Q6_01_M01012 TRANSFAC - 30130737 30130754 0.0E+00 TTATTTATTTATTTATTT 18 V_HNF3_Q6_01_M01012 TRANSFAC - 30130741 30130758 0.0E+00 TATTTTATTTATTTATTT 18 V_STAT5B_01_M00459 TRANSFAC + 30131090 30131104 5.0E-06 AGATTCCAGGAAACC 15 V_STAT5B_01_M00459 TRANSFAC - 30131090 30131104 0.0E+00 GGTTTCCTGGAATCT 15 V_FOXJ1_03_M02750 TRANSFAC + 30130740 30130755 3.0E-06 TAAATAAATAAATAAA 16 V_FOXJ1_03_M02750 TRANSFAC + 30130744 30130759 3.0E-06 TAAATAAATAAAATAG 16 V_HFH4_01_M00742 TRANSFAC - 30130744 30130756 1.0E-06 TTTTATTTATTTA 13 V_HOXC6_01_M01406 TRANSFAC + 30130740 30130756 8.0E-06 TAAATAAATAAATAAAA 17 V_EGR1_02_M01972 TRANSFAC - 30130926 30130936 7.0E-06 TGTGTGGGCGG 11 V_HOXD13_01_M01404 TRANSFAC + 30130745 30130760 8.0E-06 AAATAAATAAAATAGT 16 V_CDX_Q5_M00991 TRANSFAC + 30130738 30130755 0.0E+00 AATAAATAAATAAATAAA 18 V_STAT4_Q4_M01666 TRANSFAC + 30131093 30131106 7.0E-06 TTCCAGGAAACCCA 14 V_HMGA2_01_M01300 TRANSFAC + 30131199 30131213 3.0E-06 AAATTCTGGGTAATT 15 V_ELF4_04_M02850 TRANSFAC + 30130738 30130754 1.0E-05 AATAAATAAATAAATAA 17 V_TCF3_04_M02816 TRANSFAC - 30135073 30135089 6.0E-06 AAACCTTCAAAGGAAAA 17 V_POU3F2_01_M00463 TRANSFAC + 30130747 30130760 9.0E-06 ATAAATAAAATAGT 14 V_ZFP105_03_M02827 TRANSFAC + 30130742 30130756 4.0E-06 AATAAATAAATAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 30130743 30130757 1.0E-05 ATAAATAAATAAAAT 15 V_ZFP105_03_M02827 TRANSFAC + 30130746 30130760 4.0E-06 AATAAATAAAATAGT 15 V_HNF1_Q6_M00790 TRANSFAC - 30130736 30130753 3.0E-06 TATTTATTTATTTATTTA 18 V_HNF1_Q6_M00790 TRANSFAC - 30130740 30130757 6.0E-06 ATTTTATTTATTTATTTA 18 V_ER81_02_M02065 TRANSFAC - 30130935 30130944 1.0E-05 GCCGGAAGTG 10 V_CDX2_01_M01449 TRANSFAC - 30131014 30131029 6.0E-06 GGGAGCCATAAACTTC 16 V_MAZ_Q6_01_M02023 TRANSFAC + 30130850 30130863 2.0E-06 GAGGGAGGAAAGGA 14 V_HNF3_Q6_M00791 TRANSFAC + 30130743 30130755 0.0E+00 ATAAATAAATAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 30130743 30130753 2.0E-06 TATTTATTTAT 11 V_CDX2_Q5_M00729 TRANSFAC + 30131013 30131026 8.0E-06 AGAAGTTTATGGCT 14 V_HNF1_Q6_01_M01011 TRANSFAC + 30130735 30130755 2.0E-06 ATAAATAAATAAATAAATAAA 21 V_HNF1_Q6_01_M01011 TRANSFAC + 30130739 30130759 5.0E-06 ATAAATAAATAAATAAAATAG 21 V_GADP_01_M01258 TRANSFAC + 30130935 30130946 7.0E-06 CACTTCCGGCAG 12 V_OCT1_04_M00138 TRANSFAC + 30130731 30130753 3.0E-06 ATAAATAAATAAATAAATAAATA 23 V_OCT1_04_M00138 TRANSFAC + 30130735 30130757 8.0E-06 ATAAATAAATAAATAAATAAAAT 23 V_GR_01_M00955 TRANSFAC + 30135141 30135167 8.0E-06 AAAGAACTGACAAACTGTTCTCGTTCA 27 V_PIT1_01_M01465 TRANSFAC + 30130737 30130753 3.0E-06 AAATAAATAAATAAATA 17 V_PIT1_01_M01465 TRANSFAC + 30130741 30130757 4.0E-06 AAATAAATAAATAAAAT 17 V_GRE_C_M00205 TRANSFAC + 30135147 30135162 3.0E-06 CTGACAAACTGTTCTC 16 V_TCF7_03_M02817 TRANSFAC - 30135073 30135089 4.0E-06 AAACCTTCAAAGGAAAA 17 V_ELK1_02_M00025 TRANSFAC - 30130934 30130947 9.0E-06 TCTGCCGGAAGTGT 14 V_XFD2_01_M00268 TRANSFAC + 30130740 30130753 2.0E-06 TAAATAAATAAATA 14 V_XFD2_01_M00268 TRANSFAC + 30130744 30130757 4.0E-06 TAAATAAATAAAAT 14 V_NCX_02_M01420 TRANSFAC + 30130737 30130753 0.0E+00 AAATAAATAAATAAATA 17 V_NCX_02_M01420 TRANSFAC - 30130737 30130753 1.0E-06 TATTTATTTATTTATTT 17 V_NCX_02_M01420 TRANSFAC + 30130740 30130756 3.0E-06 TAAATAAATAAATAAAA 17 V_NCX_02_M01420 TRANSFAC + 30130741 30130757 1.0E-06 AAATAAATAAATAAAAT 17 V_NCX_02_M01420 TRANSFAC - 30130741 30130757 8.0E-06 ATTTTATTTATTTATTT 17 V_HB24_01_M01399 TRANSFAC + 30130741 30130755 7.0E-06 AAATAAATAAATAAA 15 V_STAT4_Q5_M02117 TRANSFAC + 30131093 30131102 7.0E-06 TTCCAGGAAA 10 V_TBP_06_M02814 TRANSFAC + 30130738 30130753 1.0E-06 AATAAATAAATAAATA 16 V_TBP_06_M02814 TRANSFAC - 30130738 30130753 3.0E-06 TATTTATTTATTTATT 16 V_TBP_06_M02814 TRANSFAC - 30130740 30130755 2.0E-06 TTTATTTATTTATTTA 16 V_TBP_06_M02814 TRANSFAC + 30130742 30130757 7.0E-06 AATAAATAAATAAAAT 16 V_TBP_06_M02814 TRANSFAC - 30130742 30130757 1.0E-06 ATTTTATTTATTTATT 16 V_TBP_06_M02814 TRANSFAC - 30130744 30130759 4.0E-06 CTATTTTATTTATTTA 16 V_STAT3_03_M01595 TRANSFAC + 30131091 30131106 6.0E-06 GATTCCAGGAAACCCA 16 V_CETS1P54_03_M01078 TRANSFAC - 30130932 30130947 1.0E-06 TCTGCCGGAAGTGTGT 16 V_GR_Q6_02_M01836 TRANSFAC + 30135151 30135163 3.0E-06 CAAACTGTTCTCG 13 V_HFH8_01_M00294 TRANSFAC - 30130744 30130756 3.0E-06 TTTTATTTATTTA 13 V_MTF1_06_M02882 TRANSFAC + 30130742 30130755 7.0E-06 AATAAATAAATAAA 14 V_MTF1_06_M02882 TRANSFAC + 30130745 30130758 2.0E-06 AAATAAATAAAATA 14 V_LEF1_Q2_01_M01022 TRANSFAC - 30130982 30130991 8.0E-06 CATCAAAGTC 10 V_T3R_01_M00239 TRANSFAC - 30131110 30131125 9.0E-06 CCATGAGGTCACAGGG 16 V_BRN4_01_M01473 TRANSFAC + 30130737 30130753 4.0E-06 AAATAAATAAATAAATA 17 V_BRN4_01_M01473 TRANSFAC + 30130741 30130757 6.0E-06 AAATAAATAAATAAAAT 17 V_BRN4_01_M01473 TRANSFAC + 30130742 30130758 7.0E-06 AATAAATAAATAAAATA 17 V_FOXL1_04_M02753 TRANSFAC + 30130738 30130754 1.0E-06 AATAAATAAATAAATAA 17 V_FOXL1_04_M02753 TRANSFAC + 30130742 30130758 1.0E-06 AATAAATAAATAAAATA 17 V_TCF4_Q5_M00671 TRANSFAC + 30135077 30135084 1.0E-05 CCTTTGAA 8 V_FOX_Q2_M00809 TRANSFAC - 30130744 30130756 0.0E+00 TTTTATTTATTTA 13 V_LMO2COM_02_M00278 TRANSFAC + 30129140 30129148 3.0E-06 CAGATAAGG 9 V_LEF1TCF1_Q4_M00978 TRANSFAC + 30130983 30130993 2.0E-06 ACTTTGATGCT 11 V_STAT5A_01_M00457 TRANSFAC + 30131090 30131104 1.0E-06 AGATTCCAGGAAACC 15 V_STAT5A_01_M00457 TRANSFAC - 30131090 30131104 3.0E-06 GGTTTCCTGGAATCT 15 V_HFH3_01_M00289 TRANSFAC - 30130744 30130756 0.0E+00 TTTTATTTATTTA 13 V_FOXJ2_01_M00422 TRANSFAC + 30130737 30130754 0.0E+00 AAATAAATAAATAAATAA 18 V_FOXJ2_01_M00422 TRANSFAC + 30130741 30130758 0.0E+00 AAATAAATAAATAAAATA 18 V_HOXD8_01_M01432 TRANSFAC + 30130737 30130753 5.0E-06 AAATAAATAAATAAATA 17 V_HNF3B_Q6_M02014 TRANSFAC - 30130746 30130754 1.0E-05 TTATTTATT 9 V_STAT1_Q6_M01823 TRANSFAC + 30131093 30131102 2.0E-06 TTCCAGGAAA 10 V_STAT1_Q6_M01823 TRANSFAC + 30131397 30131406 8.0E-06 TTCAGGGAAA 10 V_STAT1_05_M01260 TRANSFAC + 30131394 30131415 6.0E-06 GATTTCAGGGAAAGGGAACTCG 22 V_FOXK1_03_M02752 TRANSFAC + 30130738 30130754 3.0E-06 AATAAATAAATAAATAA 17 V_FOXK1_03_M02752 TRANSFAC + 30130742 30130758 3.0E-06 AATAAATAAATAAAATA 17 V_PAX4_04_M00380 TRANSFAC + 30130738 30130767 7.0E-06 AATAAATAAATAAATAAAATAGTCCAGTGT 30 V_HSF1_Q6_01_M02017 TRANSFAC - 30135024 30135037 8.0E-06 GAAGCTTCTGGTCT 14 V_TCF4_01_M01705 TRANSFAC + 30130983 30130991 7.0E-06 ACTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.