Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 89866 SEC16 homolog B (S. cerevisiae) chr1 - 177938550 - 177944050 177939050 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXO4_forkhead_DBD_dimeric_14_1 SELEX - 177938285 177938298 5.0E-06 GGAAACAAGTTAAC 14 POU2F1_POU_DBD_dimeric_14_1 SELEX + 177938321 177938334 1.0E-06 TATAAAAATTCATA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 177938321 177938334 3.0E-06 TATGAATTTTTATA 14 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 177938335 177938350 4.0E-06 TCAGAACAAAAGGTCA 16 SRY_HMG_DBD_dimeric_15_1 SELEX - 177942934 177942948 4.0E-06 TACTATTGCATTGTA 15 SOX2_HMG_full_dimeric_17_1 SELEX - 177942933 177942949 4.0E-06 TTACTATTGCATTGTAC 17 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 177938340 177938350 8.0E-06 ACAAAAGGTCA 11 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 177935571 177935579 2.0E-06 AAAAGTCAA 9 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 177938342 177938354 0.0E+00 AAAAGGTCAAAAG 13 TBX5_TBX_DBD_dimeric_20_1 SELEX + 177938358 177938377 7.0E-06 GGGTGTTGAAATTGAGACGT 20 Esrrb_MA0141.1 JASPAR + 177938479 177938490 1.0E-06 ACCTCAAGGTCA 12 Sox17_HMG_DBD_dimeric_15_1 SELEX - 177942934 177942948 5.0E-06 TACTATTGCATTGTA 15 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 177942956 177942969 1.0E-06 GTAATCATCATTCT 14 IRF1_MA0050.1 JASPAR + 177935571 177935582 5.0E-06 AAAAGTCAAACT 12 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 177938321 177938334 2.0E-06 TATAAAAATTCATA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 177938321 177938334 3.0E-06 TATGAATTTTTATA 14 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 177935563 177935578 1.0E-06 TGAGATTTAAAAGTCA 16 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 177935563 177935578 2.0E-06 TGACTTTTAAATCTCA 16 POU2F3_POU_DBD_dimeric_12_1 SELEX + 177938322 177938333 4.0E-06 ATAAAAATTCAT 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 177938322 177938333 8.0E-06 ATGAATTTTTAT 12 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 177938482 177938491 3.0E-06 TCAAGGTCAC 10 SOX14_HMG_DBD_dimeric_12_1 SELEX - 177942936 177942947 3.0E-06 ACTATTGCATTG 12 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX + 177938481 177938491 5.0E-06 CTCAAGGTCAC 11 JDP2_bZIP_full_dimeric_9_1 SELEX + 177942923 177942931 1.0E-05 ATGAGTCAC 9 DUXA_homeodomain_DBD_dimeric_13_1 SELEX + 177942951 177942963 3.0E-06 ACAATGTAATCAT 13 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 177938322 177938333 5.0E-06 ATAAAAATTCAT 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 177938322 177938333 9.0E-06 ATGAATTTTTAT 12 Pou5f1_MA0142.1 JASPAR + 177935392 177935406 5.0E-06 CTTTTTTATTTAAAA 15 Pou5f1_MA0142.1 JASPAR + 177942964 177942978 3.0E-06 CATTCTAATGGATAT 15 HNF4A_MA0114.1 JASPAR + 177939202 177939214 5.0E-06 AGGGCAAAGTACA 13 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 177938482 177938492 2.0E-06 TCAAGGTCACT 11 Sox11_HMG_DBD_dimeric_15_1 SELEX - 177942934 177942948 1.0E-05 TACTATTGCATTGTA 15 FOXO3_forkhead_full_dimeric_14_1 SELEX - 177938285 177938298 6.0E-06 GGAAACAAGTTAAC 14 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 177938336 177938350 7.0E-06 CAGAACAAAAGGTCA 15 POU3F3_POU_DBD_dimeric_12_1 SELEX + 177938322 177938333 7.0E-06 ATAAAAATTCAT 12 Sox3_HMG_DBD_dimeric_17_1 SELEX + 177942933 177942949 9.0E-06 GTACAATGCAATAGTAA 17 Sox1_HMG_DBD_dimeric_15_1 SELEX - 177942934 177942948 4.0E-06 TACTATTGCATTGTA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 177935394 177935406 6.0E-06 TTTTAAATAAAAA 13 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 177938336 177938350 3.0E-06 CAGAACAAAAGGTCA 15 V_CEBPG_Q6_M00622 TRANSFAC - 177935414 177935426 2.0E-06 TTTACTACAAAAT 13 V_HMGIY_Q3_M01010 TRANSFAC - 177938321 177938335 1.0E-05 ATATGAATTTTTATA 15 V_BCL6_01_M01183 TRANSFAC + 177935397 177935412 2.0E-06 TTATTTAAAACTCTTT 16 V_BCL6_01_M01183 TRANSFAC + 177935416 177935431 8.0E-06 TTTGTAGTAAAACTCT 16 V_ERR3_Q2_01_M02094 TRANSFAC + 177938480 177938492 0.0E+00 CCTCAAGGTCACT 13 V_COE1_Q6_M01871 TRANSFAC + 177938497 177938510 5.0E-06 ACTCAGGGGAACCT 14 V_LRH1_Q5_01_M02098 TRANSFAC + 177938480 177938490 9.0E-06 CCTCAAGGTCA 11 V_MMEF2_Q6_M00405 TRANSFAC - 177935393 177935408 7.0E-06 AGTTTTAAATAAAAAA 16 V_POU5F1_02_M02245 TRANSFAC + 177935392 177935406 5.0E-06 CTTTTTTATTTAAAA 15 V_POU5F1_02_M02245 TRANSFAC + 177942964 177942978 3.0E-06 CATTCTAATGGATAT 15 V_HOXA13_02_M01297 TRANSFAC - 177935409 177935417 9.0E-06 AAATAAAAG 9 V_SATB1_Q3_M01723 TRANSFAC + 177942988 177943003 4.0E-06 TTTTCTAATGGAAGAA 16 V_NR2F2_03_M02783 TRANSFAC + 177938339 177938354 0.0E+00 AACAAAAGGTCAAAAG 16 V_ISL2_01_M01328 TRANSFAC - 177942965 177942980 4.0E-06 ATATATCCATTAGAAT 16 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 177935420 177935433 0.0E+00 TGAGAGTTTTACTA 14 V_EAR2_Q2_M01728 TRANSFAC - 177939201 177939214 1.0E-06 TGTACTTTGCCCTA 14 V_HNF4A_03_M02220 TRANSFAC + 177939202 177939214 5.0E-06 AGGGCAAAGTACA 13 V_NERF_Q2_M00531 TRANSFAC - 177935487 177935504 4.0E-06 TCTCAGGAAGTGGTTTTC 18 V_PPAR_DR1_Q2_M00763 TRANSFAC - 177939202 177939214 7.0E-06 TGTACTTTGCCCT 13 V_CDX_Q5_M00991 TRANSFAC - 177935400 177935417 0.0E+00 AAATAAAAGAGTTTTAAA 18 V_MEF2A_Q6_M02024 TRANSFAC + 177935398 177935407 5.0E-06 TATTTAAAAC 10 V_CDP_04_M01344 TRANSFAC - 177942954 177942968 3.0E-06 GAATGATGATTACAT 15 V_ELF4_04_M02850 TRANSFAC - 177935391 177935407 2.0E-06 GTTTTAAATAAAAAAGA 17 V_BACH1_01_M00495 TRANSFAC + 177942920 177942934 3.0E-06 ACAATGAGTCACAGT 15 V_SOX7_03_M02807 TRANSFAC - 177935402 177935423 8.0E-06 ACTACAAAATAAAAGAGTTTTA 22 V_SOX7_03_M02807 TRANSFAC + 177938332 177938353 9.0E-06 ATATCAGAACAAAAGGTCAAAA 22 V_POU3F2_01_M00463 TRANSFAC - 177938320 177938333 2.0E-06 ATGAATTTTTATAT 14 V_LMX1_01_M01409 TRANSFAC - 177935392 177935408 2.0E-06 AGTTTTAAATAAAAAAG 17 V_FOXO1_02_M00474 TRANSFAC - 177942953 177942966 8.0E-06 ATGATGATTACATT 14 V_HNF4_01_B_M00411 TRANSFAC + 177939201 177939215 5.0E-06 TAGGGCAAAGTACAG 15 V_GATA3_05_M02859 TRANSFAC - 177938269 177938290 5.0E-06 GTTAACTGATTTGATCAGAATC 22 V_TEF_Q6_M00672 TRANSFAC + 177942943 177942954 5.0E-06 ATAGTAATACAA 12 V_SOX8_04_M02912 TRANSFAC + 177938326 177938339 3.0E-06 AAATTCATATCAGA 14 V_STAT5A_02_M00460 TRANSFAC + 177935481 177935504 9.0E-06 ATCTGAGAAAACCACTTCCTGAGA 24 V_CDX2_Q5_M00729 TRANSFAC - 177935418 177935431 5.0E-06 AGAGTTTTACTACA 14 V_MEF2_03_M00232 TRANSFAC - 177935392 177935413 3.0E-06 AAAAGAGTTTTAAATAAAAAAG 22 V_ISRE_01_M00258 TRANSFAC - 177935569 177935583 9.0E-06 CAGTTTGACTTTTAA 15 V_CUX1_04_M02959 TRANSFAC - 177942954 177942968 3.0E-06 GAATGATGATTACAT 15 V_JUNDM2_04_M02876 TRANSFAC + 177942919 177942934 7.0E-06 TACAATGAGTCACAGT 16 V_OCT1_04_M00138 TRANSFAC - 177935408 177935430 7.0E-06 GAGTTTTACTACAAAATAAAAGA 23 V_OCT1_04_M00138 TRANSFAC + 177938320 177938342 0.0E+00 ATATAAAAATTCATATCAGAACA 23 V_ERR1_Q3_M01841 TRANSFAC - 177938479 177938493 3.0E-06 GAGTGACCTTGAGGT 15 V_DAX1_01_M01248 TRANSFAC + 177938477 177938496 5.0E-06 CCACCTCAAGGTCACTCACA 20 V_PNR_01_M01650 TRANSFAC + 177935565 177935578 6.0E-06 AGATTTAAAAGTCA 14 V_HNF4_DR1_Q3_M00764 TRANSFAC - 177939202 177939214 4.0E-06 TGTACTTTGCCCT 13 V_ARID3A_04_M02735 TRANSFAC - 177935392 177935408 1.0E-06 AGTTTTAAATAAAAAAG 17 V_ARID3A_04_M02735 TRANSFAC + 177935393 177935409 1.0E-06 TTTTTTATTTAAAACTC 17 V_TBP_06_M02814 TRANSFAC + 177935392 177935407 1.0E-05 CTTTTTTATTTAAAAC 16 V_TBP_06_M02814 TRANSFAC + 177935394 177935409 1.0E-06 TTTTTATTTAAAACTC 16 V_OCT4_02_M01124 TRANSFAC - 177935566 177935580 3.0E-06 TTTGACTTTTAAATC 15 V_SOX11_03_M02795 TRANSFAC + 177938334 177938350 4.0E-06 ATCAGAACAAAAGGTCA 17 V_NR1B1_Q6_M02110 TRANSFAC + 177938343 177938352 0.0E+00 AAAGGTCAAA 10 V_AP1_Q2_01_M00924 TRANSFAC - 177942919 177942930 1.0E-06 TGACTCATTGTA 12 V_LIM1_01_M01418 TRANSFAC - 177935392 177935408 1.0E-06 AGTTTTAAATAAAAAAG 17 V_SF1_Q6_01_M01132 TRANSFAC - 177938482 177938490 3.0E-06 TGACCTTGA 9 V_DR1_Q3_M00762 TRANSFAC + 177939202 177939214 5.0E-06 AGGGCAAAGTACA 13 V_FOXL1_02_M02857 TRANSFAC - 177935393 177935408 1.0E-06 AGTTTTAAATAAAAAA 16 V_FOXL1_02_M02857 TRANSFAC - 177935408 177935423 2.0E-06 ACTACAAAATAAAAGA 16 V_HDX_01_M01333 TRANSFAC + 177939324 177939340 0.0E+00 CATGAGAAATCATCCAA 17 V_HNF4_Q6_01_M01031 TRANSFAC + 177939202 177939215 3.0E-06 AGGGCAAAGTACAG 14 V_ERR1_Q2_M00511 TRANSFAC + 177938339 177938352 3.0E-06 AACAAAAGGTCAAA 14 V_ERR1_Q2_M00511 TRANSFAC + 177938479 177938492 2.0E-06 ACCTCAAGGTCACT 14 V_CPHX_01_M01478 TRANSFAC - 177938272 177938285 9.0E-06 CTGATTTGATCAGA 14 V_CPHX_01_M01478 TRANSFAC + 177938273 177938286 1.0E-06 CTGATCAAATCAGT 14 V_ERR2_01_M01589 TRANSFAC + 177938482 177938493 2.0E-06 TCAAGGTCACTC 12 V_TCF1_06_M02815 TRANSFAC - 177938279 177938295 2.0E-06 AACAAGTTAACTGATTT 17 V_TCF1_06_M02815 TRANSFAC + 177938280 177938296 2.0E-06 AATCAGTTAACTTGTTT 17 V_LMX1B_01_M01363 TRANSFAC + 177935392 177935408 3.0E-06 CTTTTTTATTTAAAACT 17 V_LMX1B_01_M01363 TRANSFAC - 177935393 177935409 8.0E-06 GAGTTTTAAATAAAAAA 17 V_HNF1B_01_M01425 TRANSFAC + 177938281 177938297 5.0E-06 ATCAGTTAACTTGTTTC 17 V_PLZF_02_M01075 TRANSFAC + 177935390 177935418 0.0E+00 CTCTTTTTTATTTAAAACTCTTTTATTTT 29 V_PLZF_02_M01075 TRANSFAC + 177935558 177935586 8.0E-06 GGAGTTGAGATTTAAAAGTCAAACTGGAC 29 V_ESRRA_03_M02748 TRANSFAC + 177938479 177938495 6.0E-06 ACCTCAAGGTCACTCAC 17 V_RARA_03_M02787 TRANSFAC + 177938339 177938354 2.0E-06 AACAAAAGGTCAAAAG 16 V_DMRT2_01_M01147 TRANSFAC - 177942905 177942920 8.0E-06 TATTATGATTCAATGT 16 V_DMRT2_01_M01147 TRANSFAC + 177942942 177942957 1.0E-06 AATAGTAATACAATGT 16 V_DMRT2_01_M01147 TRANSFAC - 177942951 177942966 7.0E-06 ATGATGATTACATTGT 16 V_NUR77_Q5_M01217 TRANSFAC - 177938342 177938351 2.0E-06 TTGACCTTTT 10 V_SRF_06_M02916 TRANSFAC - 177935390 177935406 4.0E-06 TTTTAAATAAAAAAGAG 17 V_SRF_06_M02916 TRANSFAC - 177935391 177935407 3.0E-06 GTTTTAAATAAAAAAGA 17 V_ERR1_Q2_01_M02093 TRANSFAC + 177938483 177938493 2.0E-06 CAAGGTCACTC 11 V_SIX6_08_M02897 TRANSFAC - 177942969 177942985 2.0E-06 CAGTGATATATCCATTA 17 V_SOX2_Q6_M01272 TRANSFAC - 177938335 177938350 9.0E-06 TGACCTTTTGTTCTGA 16 V_SOX12_03_M02796 TRANSFAC - 177938333 177938346 8.0E-06 CTTTTGTTCTGATA 14 V_HOXA10_01_M01464 TRANSFAC + 177935416 177935431 7.0E-06 TTTGTAGTAAAACTCT 16 V_GLIS2_04_M02863 TRANSFAC + 177935393 177935406 7.0E-06 TTTTTTATTTAAAA 14 V_SMAD1_01_M01590 TRANSFAC + 177938336 177938347 5.0E-06 CAGAACAAAAGG 12 V_NANOG_02_M01247 TRANSFAC + 177938332 177938351 6.0E-06 ATATCAGAACAAAAGGTCAA 20 V_OCT4_01_M01125 TRANSFAC + 177935392 177935406 3.0E-06 CTTTTTTATTTAAAA 15 V_OCT4_01_M01125 TRANSFAC + 177942964 177942978 2.0E-06 CATTCTAATGGATAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.