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RSPH1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 89765 radial spoke head 1 homolog (Chlamydomonas) chr21 - 43915901 - 43921401 43916401 Transcription Factor Binding Sites   Download all TFBS in the RSPH1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 43911588 43911605 8.0E-06 AGTGTAGATGTTGATACA 18 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 43911591 43911603 6.0E-06 ATCAACATCTACA 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 43916999 43917011 9.0E-06 GTAAACAACTTCA 13 PAX6_PAX_DBD_monomeric_19_1 SELEX - 43921098 43921116 1.0E-06 TTTGATGCATCACTGAATA 19 ESRRA_nuclearreceptor_DBD_dimeric_19_1 SELEX + 43921022 43921040 9.0E-06 GTAGGTCAATGGAAGGCTA 19 HOXC13_homeodomain_DBD_monomeric_11_1 SELEX + 43920956 43920966 2.0E-06 TCTCATAAAAT 11 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX + 43920956 43920967 9.0E-06 TCTCATAAAATT 12 SOX9_HMG_full_dimeric_16_1 SELEX + 43921062 43921077 5.0E-06 AGAAATGTAAAGTATT 16 RFX4_RFX_DBD_dimeric_16_1 SELEX + 43916373 43916388 3.0E-06 CGTCGCCATGGAGACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 43916373 43916388 2.0E-06 CGTCTCCATGGCGACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX + 43920113 43920128 0.0E+00 AGTTGCCATGGCGACT 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 43920113 43920128 0.0E+00 AGTCGCCATGGCAACT 16 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX + 43920956 43920966 2.0E-06 TCTCATAAAAT 11 NFYA_MA0060.1 JASPAR + 43916506 43916521 3.0E-06 CTCGACCAATCACCGC 16 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 43921015 43921032 4.0E-06 GAGGTATGTAGGTCAATG 18 Pax4_MA0068.1 JASPAR + 43911584 43911613 7.0E-06 AAATTGTATCAACATCTACACTAAAATCAA 30 RARG_nuclearreceptor_full_dimeric_18_1 SELEX + 43921023 43921040 8.0E-06 TAGGTCAATGGAAGGCTA 18 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 43916627 43916642 6.0E-06 CCCCGCCCCCTCGCTT 16 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX + 43920957 43920966 9.0E-06 CTCATAAAAT 10 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 43916373 43916388 3.0E-06 CGTCGCCATGGAGACG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 43916373 43916388 3.0E-06 CGTCTCCATGGCGACG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 43920113 43920128 0.0E+00 AGTTGCCATGGCGACT 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 43920113 43920128 1.0E-06 AGTCGCCATGGCAACT 16 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 43920957 43920966 6.0E-06 CTCATAAAAT 10 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX + 43921024 43921040 7.0E-06 AGGTCAATGGAAGGCTA 17 SP1_MA0079.2 JASPAR - 43916633 43916642 7.0E-06 CCCCGCCCCC 10 Gfi_MA0038.1 JASPAR + 43916611 43916620 7.0E-06 CCAATCACTG 10 RARA_nuclearreceptor_full_dimeric_17_1 SELEX + 43921024 43921040 7.0E-06 AGGTCAATGGAAGGCTA 17 RFX2_RFX_DBD_dimeric_16_1 SELEX + 43916373 43916388 2.0E-06 CGTCGCCATGGAGACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 43916373 43916388 2.0E-06 CGTCTCCATGGCGACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 43920113 43920128 0.0E+00 AGTTGCCATGGCGACT 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 43920113 43920128 0.0E+00 AGTCGCCATGGCAACT 16 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 43911532 43911548 5.0E-06 AAATTCCTTAAATCCCT 17 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 43921062 43921078 2.0E-06 AAATACTTTACATTTCT 17 POU1F1_POU_DBD_monomeric_17_1 SELEX - 43915863 43915879 3.0E-06 CCCTTGAATAAGTCATT 17 RFX5_RFX_DBD_dimeric_16_3 SELEX - 43920113 43920128 0.0E+00 AGTCGCCATGGCAACT 16 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX + 43920956 43920967 6.0E-06 TCTCATAAAATT 12 HOXB13_homeodomain_DBD_monomeric_11_1 SELEX + 43920956 43920966 3.0E-06 TCTCATAAAAT 11 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 43920973 43920988 2.0E-06 CCAGCAAGGAGGAAAA 16 HOXA13_homeodomain_full_monomeric_11_1 SELEX + 43920956 43920966 2.0E-06 TCTCATAAAAT 11 TEAD1_TEA_full_dimeric_17_1 SELEX + 43911532 43911548 1.0E-06 AAATTCCTTAAATCCCT 17 TEAD1_TEA_full_dimeric_17_1 SELEX - 43921062 43921078 1.0E-06 AAATACTTTACATTTCT 17 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX + 43920957 43920966 6.0E-06 CTCATAAAAT 10 SRY_HMG_DBD_dimeric_13_1 SELEX + 43916244 43916256 5.0E-06 CCAATATCATTCT 13 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX + 43920957 43920965 1.0E-05 CTCATAAAA 9 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 43920166 43920177 6.0E-06 TTTCTCCACACT 12 RORA_1_MA0071.1 JASPAR + 43921020 43921029 1.0E-05 ATGTAGGTCA 10 POU4F1_POU_DBD_monomeric_14_1 SELEX - 43915863 43915876 8.0E-06 TTGAATAAGTCATT 14 RORA_2_MA0072.1 JASPAR + 43921017 43921030 1.0E-06 GGTATGTAGGTCAA 14 V_DMRT4_01_M01149 TRANSFAC + 43911586 43911598 4.0E-06 ATTGTATCAACAT 13 V_MEQ_01_M02049 TRANSFAC - 43911571 43911579 7.0E-06 AACACACAC 9 V_TGIF_01_M00418 TRANSFAC + 43921050 43921060 7.0E-06 AGTTGTCAAGA 11 V_DMRT3_01_M01148 TRANSFAC - 43911584 43911598 0.0E+00 ATGTTGATACAATTT 15 V_RORA1_01_M00156 TRANSFAC + 43921018 43921030 3.0E-06 GTATGTAGGTCAA 13 V_FOXO4_02_M00476 TRANSFAC - 43916996 43917009 6.0E-06 AAGTTGTTTACAGA 14 V_LMAF_Q2_M01139 TRANSFAC - 43916936 43916944 6.0E-06 GGTCAGCAG 9 V_RORA_Q4_M01138 TRANSFAC + 43921019 43921029 5.0E-06 TATGTAGGTCA 11 V_SP1_Q6_01_M00931 TRANSFAC + 43916535 43916544 4.0E-06 GGGGCGGGGC 10 V_ISL2_01_M01328 TRANSFAC + 43911530 43911545 0.0E+00 CAAAATTCCTTAAATC 16 V_FOXO3A_Q1_M01137 TRANSFAC + 43916998 43917009 0.0E+00 TGTAAACAACTT 12 V_RFX4_03_M02789 TRANSFAC + 43916483 43916497 5.0E-06 TGTCATAGCAACGGG 15 V_RFX4_03_M02789 TRANSFAC + 43916584 43916598 7.0E-06 CGTCATAGCAACGAG 15 V_SP1_03_M02281 TRANSFAC - 43916633 43916642 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC + 43916634 43916644 8.0E-06 GGGGCGGGGAC 11 V_GM497_04_M02864 TRANSFAC - 43911567 43911582 8.0E-06 AACAACACACACACAC 16 V_GM497_04_M02864 TRANSFAC + 43920993 43921008 7.0E-06 AGATACACACACGCCC 16 V_NFY_Q6_01_M00775 TRANSFAC + 43916505 43916517 1.0E-06 CCTCGACCAATCA 13 V_NFY_Q6_01_M00775 TRANSFAC + 43916605 43916617 5.0E-06 CTTCGGCCAATCA 13 V_NFAT2_01_M01748 TRANSFAC + 43912508 43912516 2.0E-06 ATGGAAAAT 9 V_TCFAP2E_04_M02926 TRANSFAC + 43918277 43918290 8.0E-06 CACTTAAAAGAATA 14 V_HOXA13_03_M01430 TRANSFAC + 43920953 43920968 0.0E+00 ATGTCTCATAAAATTG 16 V_LDSPOLYA_B_M00317 TRANSFAC + 43911568 43911583 4.0E-06 TGTGTGTGTGTTGTTC 16 V_HOXC13_01_M01317 TRANSFAC + 43920953 43920968 0.0E+00 ATGTCTCATAAAATTG 16 V_STAT4_Q4_M01666 TRANSFAC + 43918280 43918293 4.0E-06 TTAAAAGAATAAAC 14 V_NFY_C_M00209 TRANSFAC - 43916606 43916619 3.0E-06 AGTGATTGGCCGAA 14 V_GC_01_M00255 TRANSFAC + 43916533 43916546 9.0E-06 GAGGGGCGGGGCGG 14 V_CRX_Q4_M00623 TRANSFAC - 43921091 43921103 2.0E-06 TGAATAATCTCAC 13 V_HELIOSA_02_M01004 TRANSFAC + 43912506 43912516 5.0E-06 AAATGGAAAAT 11 V_FOXA2_02_M02853 TRANSFAC + 43912469 43912483 3.0E-06 AGAAATAACACATCC 15 V_GATA3_05_M02859 TRANSFAC + 43911578 43911599 2.0E-06 TTGTTCAAATTGTATCAACATC 22 V_NFAT_Q6_M00302 TRANSFAC + 43912506 43912517 5.0E-06 AAATGGAAAATG 12 V_XFD3_01_M00269 TRANSFAC + 43916996 43917009 2.0E-06 TCTGTAAACAACTT 14 V_SP4_03_M02810 TRANSFAC - 43916628 43916644 2.0E-06 GTCCCCGCCCCCTCGCT 17 Hand1_Tcfe2a_MA0092.1 JASPAR - 43920988 43920997 4.0E-06 TATCTGGCAT 10 V_AP1_Q6_01_M00925 TRANSFAC - 43918259 43918267 9.0E-06 ATGACTTAA 9 V_SP1_Q6_M00196 TRANSFAC + 43916533 43916545 2.0E-06 GAGGGGCGGGGCG 13 V_IRF_Q6_M00772 TRANSFAC - 43912505 43912519 8.0E-06 TGCATTTTCCATTTC 15 V_PAX2_01_M00098 TRANSFAC - 43911606 43911624 9.0E-06 TCTTGTCACTTTTGATTTT 19 V_HNF1_Q6_01_M01011 TRANSFAC + 43911645 43911665 3.0E-06 ATTTGGAAAGAATTAAATTAA 21 V_HNF1_Q6_01_M01011 TRANSFAC + 43918277 43918297 8.0E-06 CACTTAAAAGAATAAACTATA 21 V_TTF1_Q6_M00794 TRANSFAC + 43916784 43916795 8.0E-06 CCCTCAAGAGGA 12 V_RFXDC2_03_M02790 TRANSFAC + 43916483 43916497 2.0E-06 TGTCATAGCAACGGG 15 V_RFXDC2_03_M02790 TRANSFAC + 43916584 43916598 3.0E-06 CGTCATAGCAACGAG 15 V_ISGF3G_03_M02771 TRANSFAC + 43911605 43911619 7.0E-06 TAAAATCAAAAGTGA 15 V_BRACH_01_M00150 TRANSFAC + 43916950 43916973 4.0E-06 GGATTCGCGGCTAGCTGTGATGTG 24 V_IRF7_01_M00453 TRANSFAC + 43912502 43912519 7.0E-06 TCAGAAATGGAAAATGCA 18 V_SP4_Q5_M01273 TRANSFAC - 43916534 43916544 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC - 43916633 43916643 9.0E-06 TCCCCGCCCCC 11 V_CAAT_01_M00254 TRANSFAC + 43916606 43916617 6.0E-06 TTCGGCCAATCA 12 V_HAND1E47_01_M00222 TRANSFAC - 43920987 43921002 1.0E-06 GTGTGTATCTGGCATT 16 V_NFYC_Q5_M02107 TRANSFAC + 43916508 43916521 4.0E-06 CGACCAATCACCGC 14 V_NFYC_Q5_M02107 TRANSFAC + 43916608 43916621 4.0E-06 CGGCCAATCACTGC 14 V_POU5F1_01_M01307 TRANSFAC + 43912514 43912523 6.0E-06 AATGCAAAGA 10 V_SMAD4_04_M02898 TRANSFAC - 43916531 43916547 5.0E-06 TCCGCCCCGCCCCTCCG 17 V_OCT1_Q6_M00195 TRANSFAC + 43921062 43921076 3.0E-06 AGAAATGTAAAGTAT 15 V_GFI1B_01_M01058 TRANSFAC + 43916611 43916622 5.0E-06 CCAATCACTGCT 12 V_DMRT7_01_M01151 TRANSFAC - 43911582 43911595 3.0E-06 TTGATACAATTTGA 14 V_NFY_01_M00287 TRANSFAC + 43916506 43916521 3.0E-06 CTCGACCAATCACCGC 16 V_EGR1_06_M02744 TRANSFAC - 43916628 43916641 5.0E-06 CCCGCCCCCTCGCT 14 V_DMRT2_01_M01147 TRANSFAC - 43911584 43911599 4.0E-06 GATGTTGATACAATTT 16 V_SRF_06_M02916 TRANSFAC + 43918279 43918295 6.0E-06 CTTAAAAGAATAAACTA 17 V_FOXJ2_01_M00422 TRANSFAC - 43920936 43920953 7.0E-06 TAATCCACAAACAGTTCA 18 V_SP1_Q2_01_M00933 TRANSFAC - 43916534 43916543 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC - 43916633 43916642 4.0E-06 CCCCGCCCCC 10 V_FOXO4_01_M00472 TRANSFAC + 43916999 43917009 7.0E-06 GTAAACAACTT 11 V_NFYA_Q5_M02106 TRANSFAC + 43916508 43916521 5.0E-06 CGACCAATCACCGC 14 V_NFYA_Q5_M02106 TRANSFAC + 43916608 43916621 8.0E-06 CGGCCAATCACTGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 43916533 43916545 4.0E-06 GAGGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC + 43916632 43916644 2.0E-06 AGGGGGCGGGGAC 13 V_DMRT1_01_M01146 TRANSFAC - 43911581 43911595 6.0E-06 TTGATACAATTTGAA 15 V_PAX4_04_M00380 TRANSFAC - 43921051 43921080 7.0E-06 AAAAATACTTTACATTTCTCTCTTGACAAC 30 V_RFX1_02_M00281 TRANSFAC - 43920112 43920129 0.0E+00 CAGTCGCCATGGCAACTG 18 V_RORA2_01_M00157 TRANSFAC + 43921018 43921030 1.0E-06 GTATGTAGGTCAA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.