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BSN Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8927 bassoon presynaptic cytomatrix protein chr3 + 49586921 - 49592421 49591921 Transcription Factor Binding Sites   Download all TFBS in the BSN promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Uncx_homeodomain_DBD_monomeric_8_1 SELEX + 49589719 49589726 9.0E-06 CTAATTAA 8 LBX2_homeodomain_DBD_dimeric_13_1 SELEX + 49589713 49589725 2.0E-06 GTAGAGCTAATTA 13 EVX2_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 1.0E-05 GCTAATTAAC 10 VSX1_homeodomain_full_monomeric_11_1 SELEX + 49589717 49589727 0.0E+00 AGCTAATTAAC 11 VSX1_homeodomain_full_monomeric_11_1 SELEX - 49589718 49589728 7.0E-06 GGTTAATTAGC 11 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX + 49589719 49589726 9.0E-06 CTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX + 49589719 49589726 5.0E-06 CTAATTAA 8 TBR1_TBX_DBD_monomeric_10_1 SELEX - 49591300 49591309 9.0E-06 AGGTGTGACA 10 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 49591863 49591873 1.0E-05 CACACGCCCCC 11 Shox2_homeodomain_DBD_monomeric_8_1 SELEX + 49589719 49589726 5.0E-06 CTAATTAA 8 ESX1_homeodomain_full_monomeric_10_1 SELEX + 49589718 49589727 3.0E-06 GCTAATTAAC 10 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 49589746 49589756 5.0E-06 TAAATCAACAT 11 NKX6-2_homeodomain_full_monomeric_8_1 SELEX + 49589719 49589726 5.0E-06 CTAATTAA 8 XBP1_bZIP_DBD_dimeric_12_1 SELEX + 49591003 49591014 9.0E-06 TATGACGTCAGA 12 XBP1_bZIP_DBD_dimeric_12_1 SELEX - 49591003 49591014 1.0E-05 TCTGACGTCATA 12 PRRX2_homeodomain_full_monomeric_8_1 SELEX + 49589719 49589726 5.0E-06 CTAATTAA 8 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX - 49591565 49591582 9.0E-06 GGCGTCATAAGGACAGGC 18 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 49591003 49591014 1.0E-05 TATGACGTCAGA 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 49591003 49591014 7.0E-06 TCTGACGTCATA 12 LMX1B_homeodomain_full_monomeric_8_1 SELEX + 49589719 49589726 9.0E-06 CTAATTAA 8 HOXA1_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 3.0E-06 GCTAATTAAC 10 JDP2_bZIP_full_dimeric_12_1 SELEX - 49591003 49591014 8.0E-06 TCTGACGTCATA 12 EOMES_TBX_DBD_monomeric_13_1 SELEX - 49591298 49591310 8.0E-06 AAGGTGTGACAGG 13 REL_MA0101.1 JASPAR - 49591643 49591652 6.0E-06 GGGGCTTTCC 10 Hoxa2_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 6.0E-06 GCTAATTAAC 10 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 1.0E-05 GCTAATTAAC 10 RAX_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 4.0E-06 GCTAATTAAC 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 2.0E-06 GCTAATTAAC 10 SHOX_homeodomain_DBD_monomeric_8_1 SELEX + 49589719 49589726 9.0E-06 CTAATTAA 8 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 49591002 49591015 5.0E-06 TTATGACGTCAGAG 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 49591002 49591015 5.0E-06 CTCTGACGTCATAA 14 EMX1_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 3.0E-06 GCTAATTAAC 10 EMX1_homeodomain_DBD_monomeric_10_1 SELEX - 49589718 49589727 3.0E-06 GTTAATTAGC 10 PRRX1_homeodomain_full_monomeric_8_1 SELEX + 49589719 49589726 5.0E-06 CTAATTAA 8 TBR1_TBX_full_monomeric_11_1 SELEX - 49591300 49591310 4.0E-06 AAGGTGTGACA 11 CREB3_bZIP_full_dimeric_14_1 SELEX + 49591002 49591015 8.0E-06 TTATGACGTCAGAG 14 CREB3_bZIP_full_dimeric_14_1 SELEX - 49591002 49591015 4.0E-06 CTCTGACGTCATAA 14 DLX6_homeodomain_DBD_monomeric_8_1 SELEX + 49589719 49589726 5.0E-06 CTAATTAA 8 NOTO_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 1.0E-06 GCTAATTAAC 10 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX + 49589719 49589726 5.0E-06 CTAATTAA 8 DLX3_homeodomain_DBD_monomeric_8_1 SELEX + 49589719 49589726 9.0E-06 CTAATTAA 8 EN1_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 5.0E-06 GCTAATTAAC 10 GBX1_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 8.0E-06 GCTAATTAAC 10 HESX1_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 5.0E-06 GCTAATTAAC 10 HESX1_homeodomain_DBD_monomeric_10_1 SELEX - 49589718 49589727 1.0E-06 GTTAATTAGC 10 RFX4_RFX_DBD_dimeric_15_1 SELEX - 49591817 49591831 3.0E-06 GGTCGCTGGGAAACA 15 LHX2_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 1.0E-06 GCTAATTAAC 10 TBX21_TBX_full_monomeric_10_1 SELEX - 49591301 49591310 8.0E-06 AAGGTGTGAC 10 TBX2_TBX_full_monomeric_11_1 SELEX - 49591300 49591310 4.0E-06 AAGGTGTGACA 11 Hoxd3_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 6.0E-06 GCTAATTAAC 10 LHX9_homeodomain_DBD_monomeric_8_1 SELEX + 49589719 49589726 5.0E-06 CTAATTAA 8 POU6F2_POU_full_monomeric_10_1 SELEX + 49589718 49589727 6.0E-06 GCTAATTAAC 10 TBX21_TBX_full_dimeric_19_1 SELEX - 49591302 49591320 5.0E-06 GCACAGATGGAAGGTGTGA 19 MEOX1_homeodomain_full_monomeric_10_1 SELEX + 49589718 49589727 1.0E-06 GCTAATTAAC 10 TBX20_TBX_DBD_monomeric_15_1 SELEX - 49591299 49591313 9.0E-06 TGGAAGGTGTGACAG 15 LBX2_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 6.0E-06 GCTAATTAAC 10 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX + 49589719 49589726 5.0E-06 CTAATTAA 8 NRF1_NRF_full_dimeric_12_1 SELEX + 49591893 49591904 0.0E+00 CGCGCATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 49591893 49591904 1.0E-06 TGCGCATGCGCG 12 EMX2_homeodomain_DBD_monomeric_10_1 SELEX + 49589718 49589727 6.0E-06 GCTAATTAAC 10 EMX2_homeodomain_DBD_monomeric_10_1 SELEX - 49589718 49589727 5.0E-06 GTTAATTAGC 10 BATF3_bZIP_DBD_dimeric_14_1 SELEX + 49591002 49591015 4.0E-06 TTATGACGTCAGAG 14 BATF3_bZIP_DBD_dimeric_14_1 SELEX - 49591002 49591015 7.0E-06 CTCTGACGTCATAA 14 TP63_p53l_DBD_dimeric_18_1 SELEX - 49594201 49594218 7.0E-06 AGCATCTTAGAACATGCT 18 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX + 49589719 49589726 9.0E-06 CTAATTAA 8 LHX6_homeodomain_full_monomeric_10_1 SELEX + 49589718 49589727 4.0E-06 GCTAATTAAC 10 LHX6_homeodomain_full_monomeric_10_1 SELEX - 49589718 49589727 6.0E-06 GTTAATTAGC 10 V_DMRT4_01_M01149 TRANSFAC - 49590925 49590937 4.0E-06 AATGTTGCGAAAT 13 V_KLF15_Q2_M01714 TRANSFAC - 49591396 49591409 8.0E-06 CAGCTGGGGAGTGG 14 V_MSX3_01_M01341 TRANSFAC + 49589714 49589729 9.0E-06 TAGAGCTAATTAACCA 16 V_CREB_Q4_M00178 TRANSFAC - 49591003 49591014 9.0E-06 TCTGACGTCATA 12 V_CBF_02_M01080 TRANSFAC - 49589721 49589736 8.0E-06 TCCTGTGTGGTTAATT 16 V_RELBP52_01_M01239 TRANSFAC - 49591643 49591652 4.0E-06 GGGGCTTTCC 10 V_CREB_Q4_01_M00917 TRANSFAC - 49591005 49591015 9.0E-06 CTCTGACGTCA 11 V_GBX2_01_M01382 TRANSFAC + 49589715 49589731 6.0E-06 AGAGCTAATTAACCACA 17 V_HOXA4_01_M01370 TRANSFAC - 49589715 49589731 4.0E-06 TGTGGTTAATTAGCTCT 17 V_CEBP_01_M00159 TRANSFAC - 49589721 49589733 2.0E-06 TGTGTGGTTAATT 13 V_HOXD1_01_M01448 TRANSFAC - 49589714 49589730 8.0E-06 GTGGTTAATTAGCTCTA 17 V_HOXD1_01_M01448 TRANSFAC + 49589715 49589731 4.0E-06 AGAGCTAATTAACCACA 17 V_ATF3_Q6_01_M01863 TRANSFAC + 49591004 49591014 6.0E-06 ATGACGTCAGA 11 V_CEBP_Q2_M00190 TRANSFAC - 49590923 49590936 7.0E-06 ATGTTGCGAAATAT 14 V_CART1_02_M01362 TRANSFAC + 49589715 49589731 1.0E-06 AGAGCTAATTAACCACA 17 V_HOXC4_01_M01369 TRANSFAC + 49589715 49589731 5.0E-06 AGAGCTAATTAACCACA 17 V_HOXA2_01_M01402 TRANSFAC - 49589714 49589729 3.0E-06 TGGTTAATTAGCTCTA 16 V_JUNDM2_03_M02772 TRANSFAC - 49591001 49591016 2.0E-06 TCTCTGACGTCATAAA 16 V_VAX2_01_M01327 TRANSFAC + 49589714 49589729 6.0E-06 TAGAGCTAATTAACCA 16 V_EVX1_01_M01475 TRANSFAC + 49589715 49589731 8.0E-06 AGAGCTAATTAACCACA 17 V_K2B_01_M01348 TRANSFAC + 49589715 49589731 6.0E-06 AGAGCTAATTAACCACA 17 V_ALX4_02_M01417 TRANSFAC + 49589715 49589731 6.0E-06 AGAGCTAATTAACCACA 17 V_PAX6_02_M01391 TRANSFAC - 49589714 49589729 6.0E-06 TGGTTAATTAGCTCTA 16 V_DLX5_01_M01388 TRANSFAC - 49589714 49589729 2.0E-06 TGGTTAATTAGCTCTA 16 V_PAX7_01_M01339 TRANSFAC + 49589715 49589731 3.0E-06 AGAGCTAATTAACCACA 17 V_CEBPB_01_M00109 TRANSFAC - 49590923 49590936 7.0E-06 ATGTTGCGAAATAT 14 V_CART1_03_M01453 TRANSFAC + 49589715 49589731 8.0E-06 AGAGCTAATTAACCACA 17 V_VSX1_01_M01335 TRANSFAC + 49589715 49589731 1.0E-06 AGAGCTAATTAACCACA 17 V_FKLF_Q5_M01837 TRANSFAC + 49593221 49593230 2.0E-06 GGGGTGGGAG 10 V_HOXA3_02_M01337 TRANSFAC + 49589714 49589727 0.0E+00 TAGAGCTAATTAAC 14 V_HOXA3_02_M01337 TRANSFAC - 49589718 49589731 1.0E-05 TGTGGTTAATTAGC 14 V_CREL_01_M00053 TRANSFAC - 49591643 49591652 6.0E-06 GGGGCTTTCC 10 V_SP4_03_M02810 TRANSFAC - 49591858 49591874 7.0E-06 GCACACGCCCCCCTTCC 17 V_CEBPB_02_M00117 TRANSFAC - 49590923 49590936 6.0E-06 ATGTTGCGAAATAT 14 V_HOXD12_01_M01380 TRANSFAC - 49590996 49591012 8.0E-06 TGACGTCATAAATCATG 17 V_TBX5_02_M01020 TRANSFAC - 49590907 49590916 8.0E-06 TAGGGTGTTA 10 V_HOXA1_01_M01487 TRANSFAC + 49589714 49589729 4.0E-06 TAGAGCTAATTAACCA 16 V_RXRA_04_M02895 TRANSFAC - 49590906 49590921 5.0E-06 TCACATAGGGTGTTAG 16 V_MAZ_Q6_01_M02023 TRANSFAC + 49593220 49593233 4.0E-06 GGGGGTGGGAGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 49593224 49593237 6.0E-06 GTGGGAGGGAGGTG 14 V_LHX2_01_M01325 TRANSFAC + 49589715 49589731 1.0E-05 AGAGCTAATTAACCACA 17 V_PAX4_05_M01385 TRANSFAC - 49589714 49589730 9.0E-06 GTGGTTAATTAGCTCTA 17 V_PAX4_05_M01385 TRANSFAC + 49589715 49589731 2.0E-06 AGAGCTAATTAACCACA 17 V_HOXC11_01_M01329 TRANSFAC - 49590997 49591012 2.0E-06 TGACGTCATAAATCAT 16 V_GSH2_01_M01326 TRANSFAC - 49589714 49589729 4.0E-06 TGGTTAATTAGCTCTA 16 V_OCT1_04_M00138 TRANSFAC + 49589744 49589766 1.0E-05 GCATGTTGATTTAAATCTGTGGA 23 V_REX1_03_M01744 TRANSFAC + 49591934 49591945 9.0E-06 GAGATGGCGGCG 12 V_RAX_01_M01389 TRANSFAC + 49589715 49589731 2.0E-06 AGAGCTAATTAACCACA 17 V_OCT1_08_M01354 TRANSFAC + 49589714 49589729 8.0E-06 TAGAGCTAATTAACCA 16 V_AHRARNT_02_M00237 TRANSFAC + 49592259 49592277 8.0E-06 GGTAAGCGCGTGTCTCGGC 19 V_ZIC3_05_M02941 TRANSFAC + 49591758 49591772 4.0E-06 CTTCTCAGCATGATA 15 V_OTP_01_M01323 TRANSFAC - 49589715 49589731 4.0E-06 TGTGGTTAATTAGCTCT 17 V_PNR_01_M01650 TRANSFAC - 49590998 49591011 1.0E-06 GACGTCATAAATCA 14 V_HOXA11_01_M01378 TRANSFAC - 49590997 49591012 2.0E-06 TGACGTCATAAATCAT 16 V_STAF_02_M00264 TRANSFAC + 49591398 49591418 1.0E-05 ACTCCCCAGCTGGCCTTAAAG 21 V_EMX2_01_M01461 TRANSFAC + 49589715 49589731 6.0E-06 AGAGCTAATTAACCACA 17 V_TBX5_01_M01019 TRANSFAC - 49591300 49591311 4.0E-06 GAAGGTGTGACA 12 V_LIM1_01_M01418 TRANSFAC + 49589715 49589731 5.0E-06 AGAGCTAATTAACCACA 17 V_HOXB4_01_M01424 TRANSFAC + 49589715 49589731 6.0E-06 AGAGCTAATTAACCACA 17 V_EN2_01_M01455 TRANSFAC + 49589715 49589731 2.0E-06 AGAGCTAATTAACCACA 17 V_DLX7_01_M01486 TRANSFAC + 49589714 49589730 9.0E-06 TAGAGCTAATTAACCAC 17 V_VJUN_01_M00036 TRANSFAC + 49591001 49591016 2.0E-06 TTTATGACGTCAGAGA 16 V_S8_01_M00099 TRANSFAC + 49589714 49589729 0.0E+00 TAGAGCTAATTAACCA 16 V_ATF1_Q6_M00691 TRANSFAC - 49591005 49591015 0.0E+00 CTCTGACGTCA 11 V_ZIC2_05_M02940 TRANSFAC + 49591758 49591772 4.0E-06 CTTCTCAGCATGATA 15 V_TAL1_01_M01591 TRANSFAC + 49593275 49593287 1.0E-05 CTGGCTTTTCTGT 13 V_BARHL1_01_M01332 TRANSFAC + 49589714 49589729 1.0E-05 TAGAGCTAATTAACCA 16 V_T3R_Q6_M00963 TRANSFAC + 49591566 49591574 7.0E-06 CCTGTCCTT 9 V_CBF_01_M01079 TRANSFAC - 49589721 49589736 0.0E+00 TCCTGTGTGGTTAATT 16 V_ATF1_03_M02738 TRANSFAC + 49591001 49591016 0.0E+00 TTTATGACGTCAGAGA 16 V_ATF1_03_M02738 TRANSFAC - 49591001 49591016 1.0E-06 TCTCTGACGTCATAAA 16 V_ATF2_Q5_M01862 TRANSFAC - 49591004 49591015 3.0E-06 CTCTGACGTCAT 12 V_ZFP206_01_M01742 TRANSFAC + 49591893 49591903 2.0E-06 CGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 49591894 49591904 0.0E+00 TGCGCATGCGC 11 V_HNF1B_01_M01425 TRANSFAC - 49589715 49589731 2.0E-06 TGTGGTTAATTAGCTCT 17 V_NRF1_Q6_M00652 TRANSFAC + 49591895 49591904 2.0E-06 CGCATGCGCA 10 V_BARX2_01_M01431 TRANSFAC - 49589714 49589729 9.0E-06 TGGTTAATTAGCTCTA 16 V_ALX4_03_M02944 TRANSFAC + 49589715 49589731 6.0E-06 AGAGCTAATTAACCACA 17 V_TBX5_Q5_M01044 TRANSFAC + 49591301 49591310 8.0E-06 GTCACACCTT 10 V_HOXC5_01_M01454 TRANSFAC + 49589715 49589731 2.0E-06 AGAGCTAATTAACCACA 17 V_CHX10_01_M00437 TRANSFAC - 49589715 49589728 0.0E+00 GGTTAATTAGCTCT 14 V_ESX1_01_M01474 TRANSFAC - 49589715 49589731 3.0E-06 TGTGGTTAATTAGCTCT 17 V_POU6F1_03_M01479 TRANSFAC - 49589714 49589730 2.0E-06 GTGGTTAATTAGCTCTA 17 V_VAX1_01_M01397 TRANSFAC - 49589714 49589729 3.0E-06 TGGTTAATTAGCTCTA 16 V_ZIC3_04_M02837 TRANSFAC - 49593212 49593226 1.0E-06 CACCCCCTGGGGGTT 15 V_ZIC1_04_M02835 TRANSFAC - 49593213 49593226 3.0E-06 CACCCCCTGGGGGT 14 V_HOXB3_01_M01330 TRANSFAC + 49589715 49589731 2.0E-06 AGAGCTAATTAACCACA 17 V_ALX3_01_M01355 TRANSFAC - 49589714 49589730 4.0E-06 GTGGTTAATTAGCTCTA 17 V_ALX3_01_M01355 TRANSFAC + 49589715 49589731 3.0E-06 AGAGCTAATTAACCACA 17 V_NKX12_01_M01427 TRANSFAC - 49589715 49589731 5.0E-06 TGTGGTTAATTAGCTCT 17 V_HOXC10_01_M01361 TRANSFAC - 49590997 49591012 2.0E-06 TGACGTCATAAATCAT 16 V_S8_02_M01376 TRANSFAC + 49589715 49589731 0.0E+00 AGAGCTAATTAACCACA 17 V_HOXD3_01_M01338 TRANSFAC + 49589714 49589729 1.0E-06 TAGAGCTAATTAACCA 16 V_CP2_01_M00072 TRANSFAC - 49589709 49589719 1.0E-06 GCTCTACCCAG 11 V_DLX1_01_M01439 TRANSFAC + 49589714 49589727 3.0E-06 TAGAGCTAATTAAC 14 V_ATF_B_M00338 TRANSFAC + 49591004 49591015 9.0E-06 ATGACGTCAGAG 12 V_ALX3_02_M02943 TRANSFAC - 49589714 49589730 4.0E-06 GTGGTTAATTAGCTCTA 17 V_ALX3_02_M02943 TRANSFAC + 49589715 49589731 3.0E-06 AGAGCTAATTAACCACA 17 V_ZIC2_04_M02836 TRANSFAC - 49593212 49593226 1.0E-06 CACCCCCTGGGGGTT 15 V_HOXB5_01_M01319 TRANSFAC - 49589714 49589729 3.0E-06 TGGTTAATTAGCTCTA 16 V_ZIC1_05_M02939 TRANSFAC + 49591758 49591772 4.0E-06 CTTCTCAGCATGATA 15 V_HOX13_02_M01452 TRANSFAC - 49589714 49589729 4.0E-06 TGGTTAATTAGCTCTA 16 V_HOXC9_01_M01416 TRANSFAC - 49590997 49591012 5.0E-06 TGACGTCATAAATCAT 16 V_IPF1_06_M01438 TRANSFAC - 49589714 49589729 6.0E-06 TGGTTAATTAGCTCTA 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.