Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8926 SNRPN upstream reading frame chr15 + 25195069 - 25200569 25200069 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MYF6_bHLH_full_dimeric_10_1 SELEX + 25201814 25201823 9.0E-06 AGCAGCTGTT 10 Foxk1_forkhead_DBD_putatively-multimeric_11_1 SELEX - 25196553 25196563 9.0E-06 AAGACACAATC 11 SRY_HMG_DBD_dimeric_15_1 SELEX - 25196623 25196637 7.0E-06 GACAAAAACATTTTT 15 Zfp652_C2H2_DBD_monomeric_13_1 SELEX - 25196601 25196613 1.0E-05 GCAAAGGATTAAA 13 SOX2_HMG_full_dimeric_17_1 SELEX - 25196622 25196638 6.0E-06 GGACAAAAACATTTTTT 17 SOX2_HMG_full_dimeric_17_1 SELEX + 25201429 25201445 8.0E-06 CGTCACTGCCATTGTGC 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 25196370 25196386 6.0E-06 GTTAACATTTGTAAGCA 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 25201354 25201370 4.0E-06 AGAAACAATGAAAAAAA 17 SRF_MADS_DBD_dimeric_12_1 SELEX + 25203019 25203030 9.0E-06 TCCTAATATGGC 12 SRF_MADS_DBD_dimeric_12_1 SELEX - 25203019 25203030 6.0E-06 GCCATATTAGGA 12 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX - 25196554 25196564 4.0E-06 AAAGACACAAT 11 NFYA_MA0060.1 JASPAR - 25196569 25196584 8.0E-06 AATGGCCAATAAGCAC 16 Sox1_HMG_DBD_dimeric_13_1 SELEX + 25201431 25201443 1.0E-06 TCACTGCCATTGT 13 Sox1_HMG_DBD_dimeric_13_1 SELEX - 25201431 25201443 5.0E-06 ACAATGGCAGTGA 13 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 25196622 25196635 4.0E-06 AAAAAATGTTTTTG 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 25196622 25196635 2.0E-06 CAAAAACATTTTTT 14 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 25196587 25196602 7.0E-06 AAATAGTTCTTAAATA 16 RUNX3_RUNX_full_monomeric_10_1 SELEX - 25196516 25196525 3.0E-06 AAACCACAAT 10 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 25196587 25196602 9.0E-06 AAATAGTTCTTAAATA 16 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX + 25196349 25196365 5.0E-06 AGGTCATATGGTAACTT 17 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX - 25196349 25196365 8.0E-06 AAGTTACCATATGACCT 17 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 25196517 25196525 8.0E-06 AAACCACAA 9 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 25196369 25196382 6.0E-06 GGTTAACATTTGTA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 25196622 25196635 8.0E-06 CAAAAACATTTTTT 14 OTX2_homeodomain_DBD_monomeric_8_1 SELEX + 25196602 25196609 7.0E-06 TTAATCCT 8 SP1_MA0079.2 JASPAR + 25199984 25199993 3.0E-06 CCCCTCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 25201814 25201823 3.0E-06 AGCAGCTGTT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 25201814 25201823 1.0E-06 AACAGCTGCT 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 25201812 25201825 4.0E-06 GGAACAGCTGCTGT 14 SOX14_HMG_DBD_dimeric_13_1 SELEX + 25201431 25201443 2.0E-06 TCACTGCCATTGT 13 SOX14_HMG_DBD_dimeric_13_1 SELEX - 25201431 25201443 2.0E-06 ACAATGGCAGTGA 13 SOX15_HMG_full_dimeric_15_1 SELEX - 25196623 25196637 8.0E-06 GACAAAAACATTTTT 15 SOX14_HMG_DBD_dimeric_12_1 SELEX + 25201431 25201442 5.0E-06 TCACTGCCATTG 12 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 25196614 25196623 8.0E-06 CCATTAAAAA 10 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 25201908 25201923 6.0E-06 TACCCACGGTGCAGCA 16 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 25201217 25201233 4.0E-06 GGATTCCACGCATTTCT 17 VENTX_homeodomain_DBD_dimeric_21_1 SELEX + 25196538 25196558 4.0E-06 CTCTAATGACTTAACGATTGT 21 VENTX_homeodomain_DBD_dimeric_21_1 SELEX - 25196602 25196622 0.0E+00 TTTTAATGGGCAAAGGATTAA 21 Foxd3_MA0041.1 JASPAR + 25196625 25196636 7.0E-06 AAATGTTTTTGT 12 PITX1_homeodomain_full_monomeric_9_1 SELEX + 25196601 25196609 2.0E-06 TTTAATCCT 9 ELK1_MA0028.1 JASPAR - 25201826 25201835 6.0E-06 CAACCGGAAA 10 Stat3_MA0144.1 JASPAR + 25201771 25201780 1.0E-05 TGCCTGGAAG 10 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 25196613 25196621 8.0E-06 CCCATTAAA 9 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 25201347 25201362 8.0E-06 TGAAAAAAAAGTAACC 16 TEAD1_TEA_full_dimeric_17_1 SELEX - 25201217 25201233 5.0E-06 GGATTCCACGCATTTCT 17 TFAP2A_MA0003.1 JASPAR + 25199965 25199973 8.0E-06 GCCCTAGGG 9 SRY_HMG_DBD_dimeric_13_1 SELEX + 25201431 25201443 8.0E-06 TCACTGCCATTGT 13 RUNX1_MA0002.2 JASPAR + 25196515 25196525 9.0E-06 CATTGTGGTTT 11 NRF1_NRF_full_dimeric_12_1 SELEX + 25200077 25200088 5.0E-06 CGCGCATGCTCA 12 Sox1_HMG_DBD_dimeric_15_1 SELEX + 25201430 25201444 6.0E-06 GTCACTGCCATTGTG 15 Sox1_HMG_DBD_dimeric_15_1 SELEX - 25201430 25201444 6.0E-06 CACAATGGCAGTGAC 15 Sox2_MA0143.1 JASPAR + 25196479 25196493 6.0E-06 TCATTGTCTTTTTAA 15 MSC_bHLH_full_dimeric_10_1 SELEX - 25201814 25201823 4.0E-06 AACAGCTGCT 10 HNF1A_MA0046.1 JASPAR + 25201347 25201360 1.0E-05 GGTTACTTTTTTTT 14 SOX9_HMG_full_dimeric_17_1 SELEX - 25201429 25201445 9.0E-06 GCACAATGGCAGTGACG 17 FOXO1_forkhead_DBD_dimeric_14_1 SELEX - 25196621 25196634 8.0E-06 AAAAACATTTTTTT 14 V_AP2ALPHA_01_M00469 TRANSFAC + 25199965 25199973 8.0E-06 GCCCTAGGG 9 V_HOXA9_01_M01351 TRANSFAC + 25196610 25196626 4.0E-06 TTGCCCATTAAAAAAAA 17 V_MEQ_01_M02049 TRANSFAC - 25201555 25201563 7.0E-06 AACACACAC 9 V_SRF_Q6_M00186 TRANSFAC - 25203018 25203031 3.0E-06 TGCCATATTAGGAT 14 V_CEBPG_Q6_M00622 TRANSFAC + 25196613 25196625 2.0E-06 CCCATTAAAAAAA 13 V_E2A_Q6_01_M02088 TRANSFAC - 25201812 25201824 8.0E-06 GAACAGCTGCTGT 13 V_TCF3_01_M01594 TRANSFAC + 25196522 25196534 9.0E-06 GTTTTCATTTGTA 13 V_DUXL_01_M01390 TRANSFAC + 25196422 25196438 5.0E-06 CATCCCAATCAGCAGTG 17 V_YY1_02_M00069 TRANSFAC - 25201448 25201467 5.0E-06 CGGCGGCCATCTTGAAGGAG 20 V_CEBP_Q3_M00770 TRANSFAC - 25196386 25196397 2.0E-06 GAGTTTGGCAAT 12 V_SOX30_03_M02804 TRANSFAC - 25201356 25201371 2.0E-06 GAGAAACAATGAAAAA 16 V_RORA1_01_M00156 TRANSFAC + 25196343 25196355 2.0E-06 AATTGTAGGTCAT 13 V_EVI1_04_M00081 TRANSFAC - 25196487 25196501 9.0E-06 GGCTAGAATTAAAAA 15 V_FOXD3_01_M00130 TRANSFAC + 25196625 25196636 5.0E-06 AAATGTTTTTGT 12 V_BCL6_01_M01183 TRANSFAC + 25196587 25196602 9.0E-06 TATTTAAGAACTATTT 16 V_AML3_Q6_M01856 TRANSFAC - 25196517 25196524 1.0E-05 AACCACAA 8 V_MEF2_02_M00231 TRANSFAC - 25196592 25196613 8.0E-06 GCAAAGGATTAAAATAGTTCTT 22 V_NFMUE1_Q6_M00651 TRANSFAC - 25201456 25201464 6.0E-06 CGGCCATCT 9 V_IRF_Q6_01_M00972 TRANSFAC - 25196311 25196321 8.0E-06 AGAAATGAAAA 11 V_POU1F1_Q6_M00744 TRANSFAC - 25200260 25200269 1.0E-06 ATGAATAAAA 10 V_YY1_Q6_M00793 TRANSFAC - 25201454 25201462 7.0E-06 GCCATCTTG 9 V_AP2_Q6_01_M00915 TRANSFAC - 25200242 25200254 3.0E-06 CGCTCCCCAGGCT 13 V_SP1_03_M02281 TRANSFAC + 25199984 25199993 3.0E-06 CCCCTCCCCC 10 V_E2A_Q2_M00804 TRANSFAC - 25201542 25201555 9.0E-06 CCACCTGCCCCCTC 14 V_AP4_Q6_01_M00927 TRANSFAC - 25201815 25201823 1.0E-05 AACAGCTGC 9 V_TCFAP2E_04_M02926 TRANSFAC + 25196614 25196627 5.0E-06 CCATTAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 25201352 25201365 5.0E-06 CAATGAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 25201353 25201366 2.0E-06 ACAATGAAAAAAAA 14 V_LDSPOLYA_B_M00317 TRANSFAC + 25196554 25196569 3.0E-06 ATTGTGTCTTTTCATG 16 V_MEF2A_Q6_M02024 TRANSFAC + 25196598 25196607 6.0E-06 TATTTTAATC 10 V_ELF4_04_M02850 TRANSFAC + 25196614 25196630 5.0E-06 CCATTAAAAAAAAATGT 17 V_ELF4_04_M02850 TRANSFAC + 25196616 25196632 0.0E+00 ATTAAAAAAAAATGTTT 17 V_TST1_01_M00133 TRANSFAC - 25200256 25200270 0.0E+00 GATGAATAAAAGTGG 15 V_SOX13_03_M02797 TRANSFAC + 25196590 25196605 2.0E-06 TTAAGAACTATTTTAA 16 V_SOX7_03_M02807 TRANSFAC - 25196623 25196644 8.0E-06 ATAAAAGGACAAAAACATTTTT 22 V_SOX7_03_M02807 TRANSFAC - 25201353 25201374 1.0E-06 AGAGAGAAACAATGAAAAAAAA 22 V_ZFP105_03_M02827 TRANSFAC + 25196616 25196630 1.0E-06 ATTAAAAAAAAATGT 15 V_ZFP105_03_M02827 TRANSFAC - 25201350 25201364 9.0E-06 AATGAAAAAAAAGTA 15 V_ZFP105_03_M02827 TRANSFAC - 25201353 25201367 8.0E-06 AACAATGAAAAAAAA 15 V_RUNX1_01_M02257 TRANSFAC + 25196515 25196525 9.0E-06 CATTGTGGTTT 11 V_PAX9_B_M00329 TRANSFAC + 25200129 25200152 7.0E-06 CTGGCGCAGAGTGGAGCGGCCGCC 24 V_NKX61_01_M00424 TRANSFAC - 25196611 25196623 4.0E-06 TTTTTAATGGGCA 13 V_AML2_01_M01759 TRANSFAC - 25196517 25196524 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC - 25201539 25201552 8.0E-06 CCTGCCCCCTCCCC 14 V_ZBP89_Q4_M01816 TRANSFAC - 25201848 25201857 6.0E-06 TCCTCCCCCC 10 V_AP1_Q6_01_M00925 TRANSFAC + 25196543 25196551 9.0E-06 ATGACTTAA 9 V_AP2BETA_Q3_M01858 TRANSFAC + 25202038 25202053 5.0E-06 GTGGCGGCCTGGAGGC 16 V_IRF_Q6_M00772 TRANSFAC + 25196307 25196321 2.0E-06 GCCGTTTTCATTTCT 15 V_SOX_Q6_M01014 TRANSFAC + 25196318 25196330 9.0E-06 TTCTTTGTGATCT 13 V_NKX22_02_M01372 TRANSFAC + 25203044 25203060 1.0E-05 AAGGCCTCTTGAAGTTT 17 V_ASCL2_03_M02737 TRANSFAC - 25201810 25201826 6.0E-06 AGGAACAGCTGCTGTAT 17 V_ASCL2_03_M02737 TRANSFAC + 25201811 25201827 0.0E+00 TACAGCAGCTGTTCCTT 17 V_DUXBL_01_M02968 TRANSFAC + 25196422 25196438 5.0E-06 CATCCCAATCAGCAGTG 17 V_OCT1_04_M00138 TRANSFAC - 25201349 25201371 1.0E-05 GAGAAACAATGAAAAAAAAGTAA 23 V_SOX12_04_M02900 TRANSFAC - 25196316 25196331 5.0E-06 CAGATCACAAAGAAAT 16 V_BBX_04_M02843 TRANSFAC - 25196364 25196380 7.0E-06 CAAATGTTAACCCTGAA 17 V_BBX_04_M02843 TRANSFAC + 25196365 25196381 2.0E-06 TCAGGGTTAACATTTGT 17 V_PPARA_02_M00518 TRANSFAC + 25199993 25200011 0.0E+00 CCAGGTCATTCCGGTGAGG 19 V_OCT4_02_M01124 TRANSFAC + 25196481 25196495 1.0E-06 ATTGTCTTTTTAATT 15 V_SOX11_03_M02795 TRANSFAC - 25201356 25201372 1.0E-06 AGAGAAACAATGAAAAA 17 V_SRF_03_M01304 TRANSFAC + 25203018 25203030 1.0E-05 ATCCTAATATGGC 13 V_PAX8_B_M00328 TRANSFAC + 25201215 25201232 5.0E-06 GCAGAAATGCGTGGAATC 18 V_OTX2_Q3_M01719 TRANSFAC - 25196600 25196612 9.0E-06 CAAAGGATTAAAA 13 V_YY1_03_M02044 TRANSFAC - 25201454 25201465 3.0E-06 GCGGCCATCTTG 12 V_ZFP187_04_M02934 TRANSFAC - 25201376 25201391 5.0E-06 AAGACCTGGTTCCCAA 16 V_MTF1_06_M02882 TRANSFAC - 25201354 25201367 5.0E-06 AACAATGAAAAAAA 14 V_HAND1E47_01_M00222 TRANSFAC - 25203025 25203040 1.0E-05 AAAGGGATCTGCCATA 16 V_NKX25_03_M01414 TRANSFAC + 25203044 25203059 8.0E-06 AAGGCCTCTTGAAGTT 16 V_IPF1_05_M01255 TRANSFAC + 25196612 25196623 7.0E-06 GCCCATTAAAAA 12 V_PITX1_01_M01484 TRANSFAC - 25196598 25196614 2.0E-06 GGCAAAGGATTAAAATA 17 V_DMRT7_01_M01151 TRANSFAC + 25199947 25199960 9.0E-06 TTGCAACAGTGCTG 14 V_DMRT7_01_M01151 TRANSFAC + 25201355 25201368 7.0E-06 TTTTTTCATTGTTT 14 V_ZFP206_01_M01742 TRANSFAC + 25201485 25201495 5.0E-06 TGCGCAAGCGC 11 V_FPM315_01_M01587 TRANSFAC + 25201849 25201860 1.0E-06 GGGGGAGGAGGG 12 V_NRF1_Q6_M00652 TRANSFAC - 25201485 25201494 8.0E-06 CGCTTGCGCA 10 V_E47_01_M00002 TRANSFAC + 25201812 25201826 1.0E-06 ACAGCAGCTGTTCCT 15 V_ZFP281_01_M01597 TRANSFAC - 25199984 25199994 2.0E-06 GGGGGGAGGGG 11 V_SRF_Q4_M00810 TRANSFAC - 25203013 25203030 5.0E-06 GCCATATTAGGATCCCGG 18 V_OCT1_06_M00162 TRANSFAC - 25196508 25196521 1.0E-05 CACAATGAGATGCC 14 V_R_01_M00273 TRANSFAC + 25200431 25200451 8.0E-06 TCCGCCCCCAACTGTGGTGTC 21 V_SRF_02_M01257 TRANSFAC + 25203018 25203035 8.0E-06 ATCCTAATATGGCAGATC 18 V_DMRT2_01_M01147 TRANSFAC + 25196440 25196455 7.0E-06 TAGAGGGTTCCAATTT 16 V_DMRT2_01_M01147 TRANSFAC - 25201360 25201375 6.0E-06 CAGAGAGAAACAATGA 16 V_SOX2_01_M02246 TRANSFAC + 25196479 25196493 6.0E-06 TCATTGTCTTTTTAA 15 V_SRF_06_M02916 TRANSFAC + 25196614 25196630 1.0E-06 CCATTAAAAAAAAATGT 17 V_SRF_06_M02916 TRANSFAC + 25196615 25196631 0.0E+00 CATTAAAAAAAAATGTT 17 V_SRF_06_M02916 TRANSFAC + 25196616 25196632 0.0E+00 ATTAAAAAAAAATGTTT 17 V_SRF_06_M02916 TRANSFAC - 25201349 25201365 1.0E-06 CAATGAAAAAAAAGTAA 17 V_VDR_Q3_M00444 TRANSFAC + 25201849 25201863 2.0E-06 GGGGGAGGAGGGAGA 15 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 25196518 25196525 1.0E-05 TGTGGTTT 8 V_SOX2_Q6_M01272 TRANSFAC + 25201356 25201371 8.0E-06 TTTTTCATTGTTTCTC 16 V_TCF11MAFG_01_M00284 TRANSFAC + 25196538 25196559 1.0E-06 CTCTAATGACTTAACGATTGTG 22 V_HNF1A_01_M02162 TRANSFAC + 25201347 25201360 1.0E-05 GGTTACTTTTTTTT 14 V_OTX1_01_M01366 TRANSFAC - 25196597 25196613 6.0E-06 GCAAAGGATTAAAATAG 17 V_PAX4_04_M00380 TRANSFAC - 25201332 25201361 6.0E-06 GAAAAAAAAGTAACCCCCAGGCATCACCTG 30 V_NANOG_02_M01247 TRANSFAC - 25196474 25196493 0.0E+00 TTAAAAAGACAATGACAAGG 20 V_NANOG_02_M01247 TRANSFAC - 25196625 25196644 1.0E-06 ATAAAAGGACAAAAACATTT 20 V_NANOG_02_M01247 TRANSFAC - 25201355 25201374 1.0E-06 AGAGAGAAACAATGAAAAAA 20 V_OCT4_01_M01125 TRANSFAC + 25196480 25196494 9.0E-06 CATTGTCTTTTTAAT 15 V_TCF4_01_M01705 TRANSFAC - 25202054 25202062 5.0E-06 CCTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.