Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CCNA1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8900 cyclin A1 chr13 + 37000966 - 37006908 37006408 Transcription Factor Binding Sites   Download all TFBS in the CCNA1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 37002396 37002411 4.0E-06 AAGCATATTTCATCAG 16 LHX6_homeodomain_full_dimeric_16_1 SELEX - 37002108 37002123 3.0E-06 TAATTAGTGTTTATTT 16 FOXF2_MA0030.1 JASPAR + 37002105 37002118 7.0E-06 GTAAAATAAACACT 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 37002107 37002118 5.0E-06 AAAATAAACACT 12 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 37002107 37002124 3.0E-06 AAAATAAACACTAATTAT 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 37002107 37002124 3.0E-06 ATAATTAGTGTTTATTTT 18 RFX4_RFX_DBD_dimeric_16_1 SELEX - 37006311 37006326 6.0E-06 CATCGCCATGGCGACC 16 FOXL1_forkhead_full_dimeric_13_1 SELEX + 37002105 37002117 9.0E-06 GTAAAATAAACAC 13 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 37006511 37006527 1.0E-06 AAGGGCAGGGAAGGGCA 17 SOX9_HMG_DBD_monomeric_9_1 SELEX - 37011141 37011149 9.0E-06 GAACAATGG 9 NFYA_MA0060.1 JASPAR - 37006391 37006406 0.0E+00 ATCGGCCAATCAGCGG 16 ZNF238_C2H2_full_monomeric_13_1 SELEX - 37002085 37002097 1.0E-05 AATACAGATGTAT 13 SPIB_ETS_DBD_monomeric_14_1 SELEX + 37011167 37011180 2.0E-06 AAAAAGGAGAAGTG 14 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 37002108 37002123 7.0E-06 TAATTAGTGTTTATTT 16 POU4F3_POU_DBD_monomeric_16_1 SELEX - 37002396 37002411 7.0E-06 AAGCATATTTCATCAG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 37002108 37002123 7.0E-06 TAATTAGTGTTTATTT 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 37006311 37006326 5.0E-06 GGTCGCCATGGCGATG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 37006354 37006369 7.0E-06 GGTCGGCATGGAAACG 16 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 37002106 37002116 6.0E-06 TAAAATAAACA 11 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 37002107 37002124 8.0E-06 AAAATAAACACTAATTAT 18 FOXI1_MA0042.1 JASPAR - 37002108 37002119 3.0E-06 TAGTGTTTATTT 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 37002106 37002116 2.0E-06 TAAAATAAACA 11 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 37011208 37011219 6.0E-06 TATGACATAATG 12 RFX2_RFX_DBD_dimeric_16_1 SELEX + 37006311 37006326 7.0E-06 GGTCGCCATGGCGATG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 37006311 37006326 8.0E-06 CATCGCCATGGCGACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 37006354 37006369 8.0E-06 GGTCGGCATGGAAACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 37006354 37006369 6.0E-06 CGTTTCCATGCCGACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 37006354 37006369 9.0E-06 CGTTTCCATGCCGACC 16 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 37002110 37002124 3.0E-06 ATAATTAGTGTTTAT 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 37002111 37002123 3.0E-06 TAAACACTAATTA 13 FEV_MA0156.1 JASPAR + 37004817 37004824 1.0E-05 CAGGAAAT 8 MTF1_C2H2_DBD_monomeric_14_1 SELEX - 37006164 37006177 1.0E-06 TCTGCACACGTCCC 14 SOX9_MA0077.1 JASPAR - 37011141 37011149 5.0E-06 GAACAATGG 9 SPI1_ETS_full_monomeric_14_1 SELEX + 37011167 37011180 1.0E-06 AAAAAGGAGAAGTG 14 RUNX1_MA0002.2 JASPAR + 37011228 37011238 8.0E-06 TTCTGTGGCTT 11 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 37002106 37002123 9.0E-06 TAAAATAAACACTAATTA 18 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 37004819 37004831 6.0E-06 GGAAATAACAACA 13 Irx3_homeodomain_DBD_dimeric_12_1 SELEX - 37011144 37011155 7.0E-06 TAACATGAACAA 12 V_ELF5_02_M01980 TRANSFAC + 37004816 37004825 3.0E-06 CCAGGAAATA 10 V_ELF5_03_M02057 TRANSFAC + 37004816 37004825 2.0E-06 CCAGGAAATA 10 V_MEIS1BHOXA9_02_M00421 TRANSFAC - 37002487 37002500 6.0E-06 TGACATTTTAGCAC 14 V_AP2ALPHA_Q6_M01857 TRANSFAC - 37006143 37006153 6.0E-06 CGCCCCCGGCC 11 V_AP1_Q2_M00173 TRANSFAC + 37007361 37007371 3.0E-06 AATGACTCAGA 11 V_AP1_Q2_M00173 TRANSFAC + 37011177 37011187 1.0E-06 AGTGACTAAGA 11 V_FREAC7_01_M00293 TRANSFAC + 37002105 37002120 3.0E-06 GTAAAATAAACACTAA 16 V_APOLYA_B_M00310 TRANSFAC + 37002109 37002123 9.0E-06 AATAAACACTAATTA 15 V_DMRT3_01_M01148 TRANSFAC + 37011094 37011108 6.0E-06 TGTTTGATGCATTAT 15 V_NF1_Q6_01_M00806 TRANSFAC - 37002428 37002444 1.0E-06 TTGAAAAGCAGCCAAAA 17 V_MTF1_Q4_M00650 TRANSFAC - 37006164 37006177 1.0E-06 TCTGCACACGTCCC 14 V_ESE1_01_M01977 TRANSFAC + 37004816 37004825 3.0E-06 CCAGGAAATA 10 V_FOXJ2_02_M00423 TRANSFAC + 37004823 37004836 5.0E-06 ATAACAACACTGTT 14 V_FOXJ1_04_M02854 TRANSFAC + 37004818 37004832 8.0E-06 AGGAAATAACAACAC 15 V_IRF_Q6_01_M00972 TRANSFAC - 37007151 37007161 3.0E-06 GAAAGAGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC - 37007148 37007163 1.0E-06 GGGAAAGAGAAACAGA 16 V_NFAT3_Q3_M01734 TRANSFAC + 37002145 37002154 4.0E-06 TATTTTTCCT 10 V_AP4_Q6_M00176 TRANSFAC + 37006215 37006224 5.0E-06 CACAGCTGGA 10 V_HNF3_Q6_01_M01012 TRANSFAC - 37002104 37002121 2.0E-06 ATTAGTGTTTATTTTACC 18 V_FOXJ1_03_M02750 TRANSFAC + 37002107 37002122 1.0E-06 AAAATAAACACTAATT 16 V_HFH4_01_M00742 TRANSFAC - 37002107 37002119 2.0E-06 TAGTGTTTATTTT 13 V_GKLF_02_M01588 TRANSFAC + 37006492 37006503 5.0E-06 GCCCCGCCCTTC 12 V_GKLF_02_M01588 TRANSFAC + 37006572 37006583 8.0E-06 GCCCCGCCCTGC 12 V_GKLF_02_M01588 TRANSFAC + 37006582 37006593 5.0E-06 GCCCCGCCCAGC 12 V_AFP1_Q6_M00616 TRANSFAC + 37004822 37004832 3.0E-06 AATAACAACAC 11 V_PU1_Q4_M01172 TRANSFAC - 37011168 37011186 1.0E-06 CTTAGTCACTTCTCCTTTT 19 V_PSX1_01_M01435 TRANSFAC + 37011276 37011292 7.0E-06 TTTCTTAATAAGTGGAT 17 V_AP4_Q6_01_M00927 TRANSFAC - 37002507 37002515 6.0E-06 ACCAGCTGC 9 V_NFY_Q6_01_M00775 TRANSFAC - 37006395 37006407 2.0E-06 AATCGGCCAATCA 13 V_AP1_Q6_M00174 TRANSFAC + 37007361 37007371 6.0E-06 AATGACTCAGA 11 V_NFY_C_M00209 TRANSFAC + 37006393 37006406 3.0E-06 GCTGATTGGCCGAT 14 V_CRX_Q4_M00623 TRANSFAC + 37002281 37002293 3.0E-06 TGTCTAATCTCAT 13 V_FOXA2_02_M02853 TRANSFAC - 37002137 37002151 1.0E-06 AAAAATAACAGATAG 15 V_FOXA2_02_M02853 TRANSFAC + 37004819 37004833 6.0E-06 GGAAATAACAACACT 15 V_POU3F2_01_M00463 TRANSFAC + 37011205 37011218 1.0E-06 ATGCATTATGTCAT 14 V_RUNX1_01_M02257 TRANSFAC + 37011228 37011238 8.0E-06 TTCTGTGGCTT 11 V_TEF_Q6_M00672 TRANSFAC + 37002102 37002113 1.0E-06 ATGGTAAAATAA 12 V_NGFIC_01_M00244 TRANSFAC + 37005906 37005917 9.0E-06 AAGCGTAGGTGT 12 V_NKX31_02_M02782 TRANSFAC - 37011279 37011295 4.0E-06 TATATCCACTTATTAAG 17 V_ZBP89_Q4_M01816 TRANSFAC - 37004843 37004852 4.0E-06 CCCTCCCCCA 10 V_GMEB1_03_M02761 TRANSFAC - 37011212 37011228 9.0E-06 ACCTTTACGTATGACAT 17 V_IRX4_01_M01410 TRANSFAC + 37011143 37011159 9.0E-06 ATTGTTCATGTTATAAG 17 V_AP1_Q6_01_M00925 TRANSFAC + 37007362 37007370 7.0E-06 ATGACTCAG 9 V_AP1_Q4_M00188 TRANSFAC + 37007361 37007371 7.0E-06 AATGACTCAGA 11 V_AP1_Q4_M00188 TRANSFAC + 37011177 37011187 1.0E-06 AGTGACTAAGA 11 V_FOXK1_04_M02856 TRANSFAC + 37004820 37004834 2.0E-06 GAAATAACAACACTG 15 V_IRF3_Q3_M01279 TRANSFAC + 37002144 37002156 6.0E-06 TTATTTTTCCTTG 13 V_EVI1_01_M00078 TRANSFAC - 37002280 37002295 7.0E-06 ACATGAGATTAGACAA 16 V_EVI1_01_M00078 TRANSFAC + 37011153 37011168 8.0E-06 TTATAAGAATAGAGAA 16 V_HNF3_Q6_M00791 TRANSFAC + 37002106 37002118 4.0E-06 TAAAATAAACACT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 37002106 37002116 1.0E-06 TGTTTATTTTA 11 V_IRF_Q6_M00772 TRANSFAC + 37007147 37007161 2.0E-06 GTCTGTTTCTCTTTC 15 V_CDX2_Q5_M00729 TRANSFAC - 37011151 37011164 5.0E-06 CTATTCTTATAACA 14 V_EHF_02_M01974 TRANSFAC + 37004816 37004825 3.0E-06 CCAGGAAATA 10 V_ISRE_01_M00258 TRANSFAC + 37007149 37007163 5.0E-06 CTGTTTCTCTTTCCC 15 V_AP1_C_M00199 TRANSFAC + 37007362 37007370 6.0E-06 ATGACTCAG 9 V_STAT4_Q5_M02117 TRANSFAC + 37011153 37011162 9.0E-06 TTATAAGAAT 10 V_GATA5_04_M02860 TRANSFAC - 37002530 37002546 4.0E-06 ATGAGAGATATATGTTG 17 V_SP1_01_M00008 TRANSFAC - 37006567 37006576 7.0E-06 GGGGCAGGGT 10 V_SOX11_03_M02795 TRANSFAC - 37011137 37011153 6.0E-06 ACATGAACAATGGGAAC 17 V_SOX9_B1_M00410 TRANSFAC - 37011139 37011152 1.0E-06 CATGAACAATGGGA 14 V_SOX17_04_M02904 TRANSFAC - 37002287 37002303 9.0E-06 GAATACATACATGAGAT 17 V_NKX32_02_M01482 TRANSFAC - 37011279 37011295 2.0E-06 TATATCCACTTATTAAG 17 V_GATA4_Q3_M00632 TRANSFAC + 37011165 37011176 5.0E-06 AGAAAAAGGAGA 12 V_NEUROD_02_M01288 TRANSFAC - 37006214 37006225 4.0E-06 CTCCAGCTGTGC 12 V_FREAC2_01_M00290 TRANSFAC + 37002105 37002120 5.0E-06 GTAAAATAAACACTAA 16 V_EHF_03_M02052 TRANSFAC + 37004816 37004825 7.0E-06 CCAGGAAATA 10 V_HBP1_04_M02866 TRANSFAC + 37011136 37011152 0.0E+00 TGTTCCCATTGTTCATG 17 V_HFH8_01_M00294 TRANSFAC - 37002107 37002119 7.0E-06 TAGTGTTTATTTT 13 V_AP1_Q4_01_M00926 TRANSFAC - 37007362 37007369 1.0E-05 TGAGTCAT 8 V_CAAT_01_M00254 TRANSFAC - 37006395 37006406 5.0E-06 ATCGGCCAATCA 12 V_NFYC_Q5_M02107 TRANSFAC - 37006391 37006404 1.0E-06 CGGCCAATCAGCGG 14 V_AP1FJ_Q2_M00172 TRANSFAC + 37007361 37007371 9.0E-06 AATGACTCAGA 11 V_AP1FJ_Q2_M00172 TRANSFAC + 37011177 37011187 2.0E-06 AGTGACTAAGA 11 V_FOXL1_04_M02753 TRANSFAC + 37002105 37002121 3.0E-06 GTAAAATAAACACTAAT 17 V_DELTAEF1_01_M00073 TRANSFAC - 37002413 37002423 9.0E-06 ACACACCTTAA 11 V_DMRT7_01_M01151 TRANSFAC - 37002490 37002503 1.0E-06 TTGTGACATTTTAG 14 V_NFY_01_M00287 TRANSFAC - 37006391 37006406 0.0E+00 ATCGGCCAATCAGCGG 16 V_FRA1_Q5_M01267 TRANSFAC - 37007362 37007369 1.0E-05 TGAGTCAT 8 V_VDR_Q6_M00961 TRANSFAC - 37011015 37011026 3.0E-06 CTCTATGAACCT 12 V_FOX_Q2_M00809 TRANSFAC - 37002107 37002119 1.0E-06 TAGTGTTTATTTT 13 V_ESE1_02_M02055 TRANSFAC + 37004816 37004825 3.0E-06 CCAGGAAATA 10 V_T3RBETA_Q6_01_M02119 TRANSFAC - 37006510 37006526 6.0E-06 AGGGCAGGGAAGGGCAG 17 V_IRF1_Q6_01_M01881 TRANSFAC + 37007149 37007162 3.0E-06 CTGTTTCTCTTTCC 14 V_DMRT2_01_M01147 TRANSFAC - 37002492 37002507 4.0E-06 CAATTTGTGACATTTT 16 V_SRF_06_M02916 TRANSFAC + 37002104 37002120 8.0E-06 GGTAAAATAAACACTAA 17 V_HFH3_01_M00289 TRANSFAC - 37002107 37002119 2.0E-06 TAGTGTTTATTTT 13 V_FOXJ2_01_M00422 TRANSFAC + 37002104 37002121 4.0E-06 GGTAAAATAAACACTAAT 18 V_SOX18_04_M02905 TRANSFAC + 37011198 37011213 9.0E-06 AGAGTAAATGCATTAT 16 V_FOXO1_01_M00473 TRANSFAC + 37002109 37002118 9.0E-06 AATAAACACT 10 V_DR3_Q4_M00966 TRANSFAC + 37002445 37002465 4.0E-06 GCTGGACTTGCTCAATCCGTT 21 V_FREAC4_01_M00292 TRANSFAC + 37002105 37002120 2.0E-06 GTAAAATAAACACTAA 16 V_NFYA_Q5_M02106 TRANSFAC - 37006391 37006404 0.0E+00 CGGCCAATCAGCGG 14 V_TCF3_05_M02920 TRANSFAC + 37002102 37002116 8.0E-06 ATGGTAAAATAAACA 15 V_FEV_01_M02269 TRANSFAC + 37004817 37004824 1.0E-05 CAGGAAAT 8 V_DEC_Q1_M00997 TRANSFAC - 37005859 37005871 5.0E-06 CCCCAAGTGCAGT 13 V_DMRT1_01_M01146 TRANSFAC - 37002489 37002503 2.0E-06 TTGTGACATTTTAGC 15 V_MTF1_05_M02778 TRANSFAC + 37006164 37006179 6.0E-06 GGGACGTGTGCAGACG 16 V_GLIS2_04_M02863 TRANSFAC - 37011274 37011287 5.0E-06 CTTATTAAGAAACA 14 V_FOXK1_03_M02752 TRANSFAC + 37002105 37002121 8.0E-06 GTAAAATAAACACTAAT 17 V_DMRT5_01_M01150 TRANSFAC - 37002491 37002505 2.0E-06 ATTTGTGACATTTTA 15 V_PAX6_01_M00097 TRANSFAC - 37011209 37011229 1.0E-06 AACCTTTACGTATGACATAAT 21 V_NF1_Q6_M00193 TRANSFAC + 37002428 37002445 7.0E-06 TTTTGGCTGCTTTTCAAG 18 V_NANOG_02_M01247 TRANSFAC - 37011136 37011155 4.0E-06 TAACATGAACAATGGGAACA 20 V_ESE1_Q3_M01214 TRANSFAC + 37004816 37004825 3.0E-06 CCAGGAAATA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.