Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CDK5R1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8851 cyclin-dependent kinase 5, regulatory subunit 1 (p35) chr17 + 30809104 - 30814604 30814104 Transcription Factor Binding Sites   Download all TFBS in the CDK5R1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX4_HMG_DBD_dimeric_16_1 SELEX - 30810191 30810206 8.0E-06 TTACACTTGCAGTGTA 16 RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 30810104 30810119 6.0E-06 ACGGGTCTAGAGGGCA 16 Tp53_p53l_DBD_dimeric_18_1 SELEX - 30816494 30816511 9.0E-06 GCAGGACAAATGTCATGT 18 ZNF713_C2H2_full_monomeric_17_1 SELEX + 30814822 30814838 3.0E-06 AAGAAGAACTCCAAGAA 17 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 30813976 30813986 1.0E-05 GCCCCGCCCCC 11 TEF_bZIP_DBD_dimeric_12_1 SELEX + 30810643 30810654 7.0E-06 AGTTATGTAATC 12 TEF_bZIP_DBD_dimeric_12_1 SELEX - 30810643 30810654 2.0E-06 GATTACATAACT 12 HLF_bZIP_full_dimeric_12_1 SELEX + 30810643 30810654 6.0E-06 AGTTATGTAATC 12 HLF_bZIP_full_dimeric_12_1 SELEX - 30810643 30810654 3.0E-06 GATTACATAACT 12 EWSR1-FLI1_MA0149.1 JASPAR - 30811067 30811084 9.0E-06 GCAAGGAAGAAAGGACAG 18 EWSR1-FLI1_MA0149.1 JASPAR - 30811071 30811088 0.0E+00 GGAAGCAAGGAAGAAAGG 18 NFIL3_MA0025.1 JASPAR + 30810645 30810655 1.0E-06 TTATGTAATCT 11 Sox17_HMG_DBD_dimeric_15_1 SELEX - 30810191 30810205 3.0E-06 TACACTTGCAGTGTA 15 DBP_bZIP_full_dimeric_12_1 SELEX + 30810643 30810654 4.0E-06 AGTTATGTAATC 12 DBP_bZIP_full_dimeric_12_1 SELEX - 30810643 30810654 4.0E-06 GATTACATAACT 12 SP1_MA0079.2 JASPAR - 30813976 30813985 7.0E-06 CCCCGCCCCC 10 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 30810643 30810654 1.0E-06 GATTACATAACT 12 HLF_MA0043.1 JASPAR - 30810643 30810654 8.0E-06 GATTACATAACT 12 CREB3L1_bZIP_full_dimeric_12_1 SELEX + 30810165 30810176 6.0E-06 TGCAACGTGGCT 12 CREB3L1_bZIP_full_dimeric_12_1 SELEX - 30810165 30810176 8.0E-06 AGCCACGTTGCA 12 Sox11_HMG_DBD_dimeric_15_1 SELEX - 30810191 30810205 8.0E-06 TACACTTGCAGTGTA 15 REST_MA0138.2 JASPAR + 30813996 30814016 0.0E+00 TGCAGAACCTTGGACAGAAGC 21 ETV6_ETS_full_dimeric_15_1 SELEX + 30813915 30813929 1.0E-06 CCGGAAGCGGGAGCG 15 Sox1_HMG_DBD_dimeric_15_1 SELEX - 30810191 30810205 3.0E-06 TACACTTGCAGTGTA 15 Sox2_MA0143.1 JASPAR + 30816500 30816514 6.0E-06 CATTTGTCCTGCAGA 15 NHLH1_bHLH_full_dimeric_10_1 SELEX - 30813489 30813498 9.0E-06 CGCAGCTGCC 10 RREB1_MA0073.1 JASPAR - 30811117 30811136 1.0E-06 CAACCCACCACCACCTCCCC 20 SOX9_HMG_full_dimeric_17_1 SELEX - 30810190 30810206 7.0E-06 TTACACTTGCAGTGTAT 17 IRX5_homeodomain_DBD_dimeric_12_1 SELEX - 30810641 30810652 9.0E-06 TTACATAACTAG 12 V_MYB_Q6_M00183 TRANSFAC - 30811058 30811067 9.0E-06 GTCAACTGCC 10 V_BCL6_Q3_01_M02085 TRANSFAC - 30810757 30810766 7.0E-06 CTTCCAAGAA 10 V_HSF1_Q6_M01023 TRANSFAC + 30810567 30810583 6.0E-06 GTGCCAGGACTTTCTTG 17 V_MAX_Q6_M01830 TRANSFAC - 30813523 30813534 1.0E-06 CCAGACACGTGC 12 V_NRSF_Q4_M01028 TRANSFAC - 30813997 30814015 4.0E-06 CTTCTGTCCAAGGTTCTGC 19 V_CEBP_Q3_M00770 TRANSFAC + 30810642 30810653 8.0E-06 TAGTTATGTAAT 12 V_ZFX_01_M01593 TRANSFAC - 30810729 30810744 9.0E-06 GAGCAGGCCTGAGCCC 16 V_ZFX_01_M01593 TRANSFAC + 30814123 30814138 1.0E-05 GGCGGGGCCGCGGCGC 16 V_LRH1_Q5_01_M02098 TRANSFAC + 30819023 30819033 7.0E-06 GATCAAGGCCA 11 V_FOXO4_02_M00476 TRANSFAC + 30814480 30814493 9.0E-06 ATCTTGTTTTCCAG 14 V_AR_Q6_01_M01996 TRANSFAC - 30814729 30814743 1.0E-06 GTTCTTGCTGTTCTG 15 V_SP1_Q6_01_M00931 TRANSFAC + 30813697 30813706 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 30813977 30813986 4.0E-06 GGGGCGGGGC 10 V_ZTA_Q2_M00711 TRANSFAC + 30811880 30811892 3.0E-06 TAACCTTGGCTCA 13 V_NR2F2_03_M02783 TRANSFAC + 30813099 30813114 4.0E-06 ACTTAGAGGTCATATT 16 V_PLAG1_02_M01973 TRANSFAC - 30814382 30814397 9.0E-06 CCCCAGTCCCGGGCCC 16 V_CEBP_Q2_M00190 TRANSFAC - 30810642 30810655 9.0E-06 AGATTACATAACTA 14 V_AP2_Q6_01_M00915 TRANSFAC - 30814303 30814315 2.0E-06 CGGTCCCCAGGCG 13 V_SP1_03_M02281 TRANSFAC - 30813976 30813985 7.0E-06 CCCCGCCCCC 10 V_PPAR_DR1_Q2_M00763 TRANSFAC + 30816497 30816509 5.0E-06 TGACATTTGTCCT 13 V_SP1_02_M01303 TRANSFAC + 30811112 30811122 5.0E-06 GGGGTGGGGAG 11 V_AIRE_02_M01000 TRANSFAC + 30813095 30813119 9.0E-06 GGGAACTTAGAGGTCATATTTGTGA 25 V_CEBPB_01_M00109 TRANSFAC + 30810642 30810655 9.0E-06 TAGTTATGTAATCT 14 V_CEBPB_01_M00109 TRANSFAC + 30810950 30810963 2.0E-06 GGATTTGGAAATCT 14 V_NRSE_B_M00325 TRANSFAC + 30813996 30814016 0.0E+00 TGCAGAACCTTGGACAGAAGC 21 V_GC_01_M00255 TRANSFAC + 30813695 30813708 9.0E-06 GAGGGGCGGGGCGG 14 V_GC_01_M00255 TRANSFAC + 30813975 30813988 2.0E-06 GGGGGGCGGGGCTG 14 V_PR_Q2_M00960 TRANSFAC + 30810698 30810707 5.0E-06 GAAAGAACAA 10 V_DBP_Q6_01_M01872 TRANSFAC + 30810645 30810652 5.0E-06 TTATGTAA 8 V_PR_01_M00954 TRANSFAC - 30814856 30814882 3.0E-06 TGAGGTGCGTGATGTTGTTCTGGTAGC 27 V_E4BP4_01_M00045 TRANSFAC + 30810643 30810654 1.0E-06 AGTTATGTAATC 12 V_MYCMAX_02_M00123 TRANSFAC + 30813521 30813532 3.0E-06 CAGCACGTGTCT 12 V_HIC1_03_M01073 TRANSFAC + 30813600 30813617 7.0E-06 TTGGGTTGCGCGGGCGCC 18 V_CEBPB_02_M00117 TRANSFAC - 30810642 30810655 2.0E-06 AGATTACATAACTA 14 V_SP1_Q6_M00196 TRANSFAC + 30813695 30813707 2.0E-06 GAGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 30813975 30813987 0.0E+00 GGGGGGCGGGGCT 13 V_MAZ_Q6_01_M02023 TRANSFAC + 30811111 30811124 6.0E-06 GGGGGTGGGGAGGT 14 V_HNF1_Q6_01_M01011 TRANSFAC + 30811867 30811887 5.0E-06 AGTGGAAAACATTTAACCTTG 21 V_GADP_01_M01258 TRANSFAC - 30813912 30813923 5.0E-06 CGCTTCCGGCGC 12 V_REST_01_M01256 TRANSFAC - 30813999 30814020 0.0E+00 GGGAGCTTCTGTCCAAGGTTCT 22 V_HNF4_DR1_Q3_M00764 TRANSFAC + 30816497 30816509 2.0E-06 TGACATTTGTCCT 13 V_STAT3_03_M01595 TRANSFAC - 30814483 30814498 8.0E-06 TCTGCCTGGAAAACAA 16 V_SRF_03_M01304 TRANSFAC + 30811940 30811952 8.0E-06 CTCCAAGTAAGGG 13 V_VBP_01_M00228 TRANSFAC + 30810644 30810653 4.0E-06 GTTATGTAAT 10 V_SP4_Q5_M01273 TRANSFAC - 30813696 30813706 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC - 30813976 30813986 1.0E-06 GCCCCGCCCCC 11 V_LRH1_Q5_M01142 TRANSFAC + 30813999 30814010 1.0E-05 AGAACCTTGGAC 12 V_ZIC2_05_M02940 TRANSFAC - 30810627 30810641 2.0E-06 GCACACAGCAGGGGA 15 V_ZIC2_05_M02940 TRANSFAC + 30810863 30810877 4.0E-06 CAGCCCAGCAGGGAA 15 V_CEBPA_01_M00116 TRANSFAC - 30810642 30810655 2.0E-06 AGATTACATAACTA 14 V_DR1_Q3_M00762 TRANSFAC - 30816497 30816509 1.0E-06 AGGACAAATGTCA 13 V_T3R_Q6_M00963 TRANSFAC + 30811066 30811074 3.0E-06 ACTGTCCTT 9 V_ERR1_Q2_M00511 TRANSFAC + 30813099 30813112 2.0E-06 ACTTAGAGGTCATA 14 V_NRSF_01_M00256 TRANSFAC + 30813996 30814016 0.0E+00 TGCAGAACCTTGGACAGAAGC 21 V_STAT1STAT1_Q3_M01212 TRANSFAC + 30814486 30814498 7.0E-06 TTTTCCAGGCAGA 13 V_PBX1_02_M00124 TRANSFAC - 30810931 30810945 7.0E-06 CCCATCAATCAGCCT 15 V_REST_02_M02256 TRANSFAC + 30813996 30814016 0.0E+00 TGCAGAACCTTGGACAGAAGC 21 V_PBX1_03_M01017 TRANSFAC - 30810933 30810944 4.0E-06 CCATCAATCAGC 12 V_ZFP281_01_M01597 TRANSFAC + 30811110 30811120 1.0E-06 TGGGGGTGGGG 11 V_LEF1TCF1_Q4_M00978 TRANSFAC - 30810700 30810710 1.0E-05 GCTTTGTTCTT 11 V_RARA_03_M02787 TRANSFAC + 30813099 30813114 7.0E-06 ACTTAGAGGTCATATT 16 V_PBX_Q3_M00998 TRANSFAC + 30810936 30810947 9.0E-06 GATTGATGGGGG 12 V_SOX2_01_M02246 TRANSFAC + 30816500 30816514 6.0E-06 CATTTGTCCTGCAGA 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 30811067 30811084 9.0E-06 GCAAGGAAGAAAGGACAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 30811071 30811088 0.0E+00 GGAAGCAAGGAAGAAAGG 18 V_VDR_Q3_M00444 TRANSFAC - 30810786 30810800 5.0E-06 GAGGGAGGGAGGTCA 15 V_SOX4_01_M01308 TRANSFAC + 30813513 30813520 1.0E-05 AACAAAGG 8 V_HLF_01_M00260 TRANSFAC + 30810644 30810653 4.0E-06 GTTATGTAAT 10 V_CTF1_01_M01196 TRANSFAC - 30813131 30813144 2.0E-06 TGGCCCGTAGCCAA 14 V_SP1_Q2_01_M00933 TRANSFAC - 30813696 30813705 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC - 30813976 30813985 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 30813675 30813688 4.0E-06 TGTGCGGGAGGGGC 14 V_CP2_01_M00072 TRANSFAC - 30810175 30810185 9.0E-06 GCTCGAACCAG 11 V_CEBP_Q2_01_M00912 TRANSFAC - 30810642 30810653 2.0E-06 ATTACATAACTA 12 V_P300_01_M00033 TRANSFAC + 30816654 30816667 1.0E-06 ACGGGGAGTGAGAC 14 V_SP1_Q4_01_M00932 TRANSFAC + 30813695 30813707 4.0E-06 GAGGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC + 30813975 30813987 1.0E-06 GGGGGGCGGGGCT 13 TLX1_NFIC_MA0119.1 JASPAR - 30813131 30813144 2.0E-06 TGGCCCGTAGCCAA 14 V_CEBPG_Q6_01_M01869 TRANSFAC + 30810951 30810962 3.0E-06 GATTTGGAAATC 12 V_SMAD1_01_M01590 TRANSFAC + 30810700 30810711 8.0E-06 AAGAACAAAGCC 12 V_SOX9_Q4_M01284 TRANSFAC + 30813512 30813522 4.0E-06 GAACAAAGGCA 11 V_ZIC1_05_M02939 TRANSFAC - 30810627 30810641 3.0E-06 GCACACAGCAGGGGA 15 V_SPIB_03_M02076 TRANSFAC - 30810712 30810721 7.0E-06 TGAGGAAGTC 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.