Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CBS Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 875 cystathionine-beta-synthase chr21 - 44495540 - 44501472 44496040 Transcription Factor Binding Sites   Download all TFBS in the CBS promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 44499869 44499887 3.0E-06 CGGCCACCAGGGGATGGTG 19 HSF2_HSF_DBD_trimeric_13_1 SELEX - 44494740 44494752 0.0E+00 TTCTGGAAGATTC 13 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX + 44496914 44496933 9.0E-06 GCGTCCCCGGCTCAGGTCAG 20 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 44496914 44496933 8.0E-06 CTGACCTGAGCCGGGGACGC 20 GABPA_MA0062.2 JASPAR + 44495216 44495226 9.0E-06 CCGGAAGCGAC 11 YY2_C2H2_full_dimeric_12_1 SELEX - 44497295 44497306 9.0E-06 CTCTGCCGCCAT 12 HSF1_HSF_full_trimeric_13_1 SELEX - 44494740 44494752 0.0E+00 TTCTGGAAGATTC 13 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 44495039 44495047 8.0E-06 AAACCACAA 9 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX - 44496363 44496376 9.0E-06 AGGGCAAGAAGTTA 14 HSF4_HSF_DBD_trimeric_13_1 SELEX - 44494740 44494752 0.0E+00 TTCTGGAAGATTC 13 SP1_MA0079.2 JASPAR + 44496068 44496077 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR + 44496095 44496104 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 44496249 44496258 3.0E-06 CCCCTCCCCC 10 Mycn_MA0104.2 JASPAR - 44496984 44496993 8.0E-06 CCCACGTGGC 10 RUNX1_MA0002.2 JASPAR - 44495039 44495049 3.0E-06 TCTTGTGGTTT 11 V_HSF1_Q6_M01023 TRANSFAC - 44494737 44494753 0.0E+00 TTTCTGGAAGATTCGGC 17 V_HSF1_Q6_M01023 TRANSFAC - 44497110 44497126 3.0E-06 CTTCCAGAGCCTTCATG 17 V_HNF1_02_M01379 TRANSFAC + 44496356 44496372 7.0E-06 ACTTGGTTAACTTCTTG 17 V_ZFX_01_M01593 TRANSFAC + 44496729 44496744 9.0E-06 CCGGAGGCCGCGGGCG 16 V_SOX30_03_M02804 TRANSFAC + 44497059 44497074 8.0E-06 GAAGAACAATAAAGCC 16 V_AML3_Q6_M01856 TRANSFAC + 44495040 44495047 1.0E-05 AACCACAA 8 V_HOXA13_02_M01297 TRANSFAC - 44496351 44496359 8.0E-06 AAGTAAAAC 9 V_P53_DECAMER_Q2_M00761 TRANSFAC - 44494513 44494522 1.0E-06 AGACAAGTCC 10 V_SP1_03_M02281 TRANSFAC + 44496068 44496077 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC + 44496095 44496104 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 44496249 44496258 3.0E-06 CCCCTCCCCC 10 V_GKLF_02_M01588 TRANSFAC + 44496078 44496089 8.0E-06 ACCCCACCCAGC 12 V_SP1_02_M01303 TRANSFAC - 44496101 44496111 5.0E-06 GGGGTGGGGGG 11 V_WT1_Q6_01_M02036 TRANSFAC - 44496010 44496019 4.0E-06 CGCCCCCGCC 10 V_SOX13_03_M02797 TRANSFAC + 44497058 44497073 7.0E-06 CGAAGAACAATAAAGC 16 V_GC_01_M00255 TRANSFAC - 44496065 44496078 7.0E-06 TGGAGGAGGGGCTG 14 V_E4BP4_01_M00045 TRANSFAC - 44497102 44497113 8.0E-06 CATGATGTAACT 12 V_RUNX1_01_M02257 TRANSFAC - 44495039 44495049 3.0E-06 TCTTGTGGTTT 11 V_MRF2_01_M00454 TRANSFAC + 44495040 44495053 9.0E-06 AACCACAAGACCCC 14 V_AML2_01_M01759 TRANSFAC + 44495040 44495047 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC - 44496008 44496021 1.0E-06 TCCGCCCCCGCCTC 14 V_KROX_Q6_M00982 TRANSFAC + 44496244 44496257 2.0E-06 GCCGCCCCCTCCCC 14 V_SP1_Q6_M00196 TRANSFAC - 44496093 44496105 4.0E-06 GGGGGGAGGGGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 44496099 44496112 9.0E-06 AGGGGTGGGGGGGA 14 V_EGR1_Q6_M01873 TRANSFAC + 44496011 44496020 4.0E-06 GCGGGGGCGG 10 V_STAT5A_02_M00460 TRANSFAC - 44495358 44495381 3.0E-06 TTCCTGGGACCTCACTTCCCTGAG 24 V_HMX1_01_M00433 TRANSFAC - 44494510 44494519 5.0E-06 CAAGTCCGTG 10 V_PAX5_01_M00143 TRANSFAC + 44493460 44493487 4.0E-06 GAAAAGGGCAGTGAGGAGAAAACTCTGC 28 V_SFPI1_04_M02896 TRANSFAC + 44496381 44496394 0.0E+00 GAATTTAAGGAACC 14 V_SP1SP3_Q4_M01219 TRANSFAC + 44496245 44496255 1.0E-06 CCGCCCCCTCC 11 V_TAL1BETAE47_01_M00065 TRANSFAC + 44493375 44493390 6.0E-06 CCGGACAGATGGTGCT 16 V_MUSCLE_INI_B_M00321 TRANSFAC - 44495943 44495963 1.0E-06 CGAGGCCGCCACCCCGGGGTC 21 V_MYCN_01_M02259 TRANSFAC - 44496984 44496993 8.0E-06 CCCACGTGGC 10 V_STAT3_03_M01595 TRANSFAC + 44494848 44494863 4.0E-06 ACTGCCGGGAACGCAG 16 V_CTCF_01_M01200 TRANSFAC - 44499869 44499888 1.0E-05 CCGGCCACCAGGGGATGGTG 20 V_TAL1BETAITF2_01_M00070 TRANSFAC + 44493375 44493390 5.0E-06 CCGGACAGATGGTGCT 16 V_VBP_01_M00228 TRANSFAC + 44497103 44497112 2.0E-06 GTTACATCAT 10 V_SP4_Q5_M01273 TRANSFAC + 44496094 44496104 5.0E-06 GCCCCTCCCCC 11 V_MAZR_01_M00491 TRANSFAC + 44497082 44497094 4.0E-06 TGGGGAGGGGACA 13 V_TAL1ALPHAE47_01_M00066 TRANSFAC + 44493375 44493390 5.0E-06 CCGGACAGATGGTGCT 16 V_MAX_04_M02881 TRANSFAC - 44496037 44496050 9.0E-06 CTGCCACGAGACAT 14 V_TCF1_06_M02815 TRANSFAC - 44496355 44496371 1.0E-06 AAGAAGTTAACCAAGTA 17 V_TCF1_06_M02815 TRANSFAC + 44496356 44496372 5.0E-06 ACTTGGTTAACTTCTTG 17 V_ZFP281_01_M01597 TRANSFAC - 44496068 44496078 7.0E-06 TGGAGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 44496095 44496105 2.0E-06 GGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 44496249 44496259 7.0E-06 CGGGGGAGGGG 11 V_SRF_Q5_01_M00922 TRANSFAC + 44495497 44495511 3.0E-06 CCAAAAAGGGCGATT 15 V_SRF_Q4_M00810 TRANSFAC + 44495496 44495513 9.0E-06 GCCAAAAAGGGCGATTTG 18 V_SOX21_04_M02907 TRANSFAC - 44497057 44497073 6.0E-06 GCTTTATTGTTCTTCGT 17 V_HSF_Q6_M00641 TRANSFAC - 44497113 44497125 2.0E-06 TTCCAGAGCCTTC 13 V_SOX8_03_M02808 TRANSFAC - 44497058 44497074 6.0E-06 GGCTTTATTGTTCTTCG 17 V_ZFP281_04_M02831 TRANSFAC + 44496093 44496107 1.0E-05 GGCCCCTCCCCCCCA 15 V_ZFP281_04_M02831 TRANSFAC + 44496094 44496108 5.0E-06 GCCCCTCCCCCCCAC 15 V_HSF2_02_M01244 TRANSFAC + 44494740 44494752 0.0E+00 GAATCTTCCAGAA 13 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 44495039 44495046 1.0E-05 TGTGGTTT 8 V_HLF_01_M00260 TRANSFAC + 44497103 44497112 5.0E-06 GTTACATCAT 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 44496248 44496261 1.0E-06 GGCGGGGGAGGGGG 14 V_LPOLYA_B_M00318 TRANSFAC + 44497065 44497072 7.0E-06 CAATAAAG 8 V_SP1_Q4_01_M00932 TRANSFAC - 44496093 44496105 5.0E-06 GGGGGGAGGGGCC 13 V_RNF96_01_M01199 TRANSFAC - 44496734 44496743 7.0E-06 GCCCGCGGCC 10 V_BRCA_01_M01082 TRANSFAC - 44493430 44493437 1.0E-05 TTCTGTTG 8 V_SEF1_C_M00214 TRANSFAC - 44495712 44495730 9.0E-06 GGCGCCCACGCCTGCGGTC 19 V_PAX4_04_M00380 TRANSFAC - 44497010 44497039 3.0E-06 GACATTTAATTCTAATTCACGTCTCACTCC 30 V_SMAD1_01_M01590 TRANSFAC + 44497060 44497071 7.0E-06 AAGAACAATAAA 12 V_T3RALPHA_Q6_M01724 TRANSFAC + 44496923 44496933 8.0E-06 GCTCAGGTCAG 11 V_HSF1_Q6_01_M02017 TRANSFAC + 44494740 44494753 5.0E-06 GAATCTTCCAGAAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.