Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RGS20 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8601 regulator of G-protein signaling 20 chr8 + 54759367 - 54764867 54764367 Transcription Factor Binding Sites   Download all TFBS in the RGS20 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Uncx_homeodomain_DBD_monomeric_8_1 SELEX + 54764172 54764179 4.0E-06 TTAATTAA 8 Uncx_homeodomain_DBD_monomeric_8_1 SELEX - 54764172 54764179 4.0E-06 TTAATTAA 8 POU4F2_POU_full_monomeric_16_1 SELEX - 54764172 54764187 9.0E-06 ATGTATTCTTAATTAA 16 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 54764162 54764179 4.0E-06 TTAATTAAAATGTAATCC 18 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 54764172 54764189 1.0E-05 TTAATTAAGAATACATTT 18 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX + 54764172 54764179 4.0E-06 TTAATTAA 8 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX - 54764172 54764179 4.0E-06 TTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX + 54764172 54764179 9.0E-06 TTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX - 54764172 54764179 9.0E-06 TTAATTAA 8 ALX3_homeodomain_full_monomeric_10_1 SELEX + 54764171 54764180 6.0E-06 TTTAATTAAG 10 ALX3_homeodomain_full_monomeric_10_1 SELEX - 54764171 54764180 4.0E-06 CTTAATTAAA 10 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 54764162 54764178 7.0E-06 GGATTACATTTTAATTA 17 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 54764173 54764189 4.0E-06 TAATTAAGAATACATTT 17 En1_MA0027.1 JASPAR + 54760116 54760126 8.0E-06 AAATTGTTTTC 11 Shox2_homeodomain_DBD_monomeric_8_1 SELEX + 54764172 54764179 9.0E-06 TTAATTAA 8 Shox2_homeodomain_DBD_monomeric_8_1 SELEX - 54764172 54764179 9.0E-06 TTAATTAA 8 TBX1_TBX_DBD_dimeric_23_1 SELEX + 54768088 54768110 3.0E-06 TTACACACATTACATGTGTAATG 23 TBX1_TBX_DBD_dimeric_23_1 SELEX - 54768088 54768110 3.0E-06 CATTACACATGTAATGTGTGTAA 23 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX + 54759460 54759471 7.0E-06 AAATTGCAATGA 12 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX - 54759460 54759471 9.0E-06 TCATTGCAATTT 12 SOX8_HMG_full_dimeric_15_1 SELEX - 54764071 54764085 4.0E-06 AAAAATTCTTGTGTT 15 Alx1_homeodomain_DBD_monomeric_10_1 SELEX + 54764171 54764180 4.0E-06 TTTAATTAAG 10 Alx1_homeodomain_DBD_monomeric_10_1 SELEX - 54764171 54764180 3.0E-06 CTTAATTAAA 10 NKX6-2_homeodomain_full_monomeric_8_1 SELEX + 54764172 54764179 9.0E-06 TTAATTAA 8 NKX6-2_homeodomain_full_monomeric_8_1 SELEX - 54764172 54764179 9.0E-06 TTAATTAA 8 PRRX2_homeodomain_full_monomeric_8_1 SELEX + 54764172 54764179 9.0E-06 TTAATTAA 8 PRRX2_homeodomain_full_monomeric_8_1 SELEX - 54764172 54764179 9.0E-06 TTAATTAA 8 LMX1B_homeodomain_full_monomeric_8_1 SELEX + 54764172 54764179 9.0E-06 TTAATTAA 8 LMX1B_homeodomain_full_monomeric_8_1 SELEX - 54764172 54764179 9.0E-06 TTAATTAA 8 Sox17_HMG_DBD_dimeric_15_2 SELEX - 54759471 54759485 1.0E-06 ATAAATCTCATACAT 15 SHOX_homeodomain_DBD_monomeric_8_1 SELEX + 54764172 54764179 9.0E-06 TTAATTAA 8 SHOX_homeodomain_DBD_monomeric_8_1 SELEX - 54764172 54764179 9.0E-06 TTAATTAA 8 PRRX1_homeodomain_full_monomeric_8_1 SELEX + 54764172 54764179 9.0E-06 TTAATTAA 8 PRRX1_homeodomain_full_monomeric_8_1 SELEX - 54764172 54764179 9.0E-06 TTAATTAA 8 SRY_MA0084.1 JASPAR - 54760118 54760126 9.0E-06 GAAAACAAT 9 NFATC1_NFAT_full_dimeric_20_1 SELEX - 54764134 54764153 0.0E+00 AATGGAAAGAAATGATCCAA 20 MIXL1_homeodomain_full_monomeric_10_1 SELEX + 54764171 54764180 3.0E-06 TTTAATTAAG 10 MIXL1_homeodomain_full_monomeric_10_1 SELEX - 54764171 54764180 2.0E-06 CTTAATTAAA 10 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX + 54764172 54764179 9.0E-06 TTAATTAA 8 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX - 54764172 54764179 9.0E-06 TTAATTAA 8 Lhx3_MA0135.1 JASPAR - 54764094 54764106 2.0E-06 AAATTAAATAGAT 13 Lhx3_MA0135.1 JASPAR + 54764097 54764109 2.0E-06 TATTTAATTTATC 13 SOX7_HMG_full_dimeric_17_1 SELEX - 54764070 54764086 8.0E-06 CAAAAATTCTTGTGTTA 17 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 54764171 54764180 4.0E-06 CTTAATTAAA 10 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 54764162 54764179 7.0E-06 TTAATTAAAATGTAATCC 18 SOX18_HMG_full_dimeric_15_3 SELEX - 54759471 54759485 8.0E-06 ATAAATCTCATACAT 15 GSX1_homeodomain_DBD_monomeric_10_1 SELEX - 54764171 54764180 4.0E-06 CTTAATTAAA 10 IRF3_IRF_full_trimeric_21_1 SELEX - 54764143 54764163 9.0E-06 CCTAAATCAAAATGGAAAGAA 21 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX + 54764172 54764179 9.0E-06 TTAATTAA 8 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX - 54764172 54764179 9.0E-06 TTAATTAA 8 POU3F3_POU_DBD_dimeric_12_1 SELEX + 54764172 54764183 6.0E-06 TTAATTAAGAAT 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 54764162 54764179 7.0E-06 TTAATTAAAATGTAATCC 18 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 54764172 54764189 1.0E-05 TTAATTAAGAATACATTT 18 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX + 54764172 54764179 4.0E-06 TTAATTAA 8 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX - 54764172 54764179 4.0E-06 TTAATTAA 8 SOX9_HMG_full_dimeric_17_1 SELEX - 54764070 54764086 5.0E-06 CAAAAATTCTTGTGTTA 17 Meox2_homeodomain_DBD_monomeric_8_1 SELEX + 54764172 54764179 9.0E-06 TTAATTAA 8 Meox2_homeodomain_DBD_monomeric_8_1 SELEX - 54764172 54764179 9.0E-06 TTAATTAA 8 V_HOXA9_01_M01351 TRANSFAC - 54759475 54759491 6.0E-06 GGGGCAATAAATCTCAT 17 V_STAT5A_Q6_M01890 TRANSFAC - 54759530 54759542 7.0E-06 AATTTTCTAAAAA 13 V_TST1_02_M01316 TRANSFAC - 54764093 54764109 7.0E-06 GATAAATTAAATAGATT 17 V_TST1_02_M01316 TRANSFAC + 54764094 54764110 7.0E-06 ATCTATTTAATTTATCA 17 V_DBX1_01_M01483 TRANSFAC + 54764097 54764113 6.0E-06 TATTTAATTTATCACTA 17 V_DBX1_01_M01483 TRANSFAC + 54764169 54764185 3.0E-06 ATTTTAATTAAGAATAC 17 V_TCF3_01_M01594 TRANSFAC + 54761699 54761711 7.0E-06 TCTTTTTTTTTTT 13 V_SRY_07_M02813 TRANSFAC - 54764165 54764180 9.0E-06 CTTAATTAAAATGTAA 16 V_BCL6B_03_M02740 TRANSFAC + 54759528 54759543 4.0E-06 TCTTTTTAGAAAATTT 16 V_NF1_Q6_01_M00806 TRANSFAC + 54764076 54764092 1.0E-05 AAGAATTTTTGCCAAAC 17 V_CEBP_Q3_M00770 TRANSFAC - 54764083 54764094 4.0E-06 TTGTTTGGCAAA 12 V_HMGIY_Q3_M01010 TRANSFAC - 54759533 54759547 5.0E-06 TGTTAAATTTTCTAA 15 V_HMGIY_Q3_M01010 TRANSFAC + 54761696 54761710 1.0E-05 TCTTCTTTTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC + 54764253 54764267 9.0E-06 GAATAGAACATGAAA 15 V_ISL2_01_M01328 TRANSFAC + 54764167 54764182 6.0E-06 ACATTTTAATTAAGAA 16 V_IRF2_Q6_M01882 TRANSFAC - 54764142 54764157 6.0E-06 TCAAAATGGAAAGAAA 16 V_OCT1_01_M00135 TRANSFAC + 54764109 54764127 9.0E-06 CACTATATGCTAAGCTGTA 19 V_HOXA4_01_M01370 TRANSFAC - 54764168 54764184 0.0E+00 TATTCTTAATTAAAATG 17 V_HOXC4_01_M01369 TRANSFAC + 54764096 54764112 9.0E-06 CTATTTAATTTATCACT 17 V_HOXC4_01_M01369 TRANSFAC + 54764168 54764184 0.0E+00 CATTTTAATTAAGAATA 17 V_NKX61_03_M01489 TRANSFAC + 54764167 54764183 9.0E-06 ACATTTTAATTAAGAAT 17 V_HOXC6_01_M01406 TRANSFAC + 54764168 54764184 0.0E+00 CATTTTAATTAAGAATA 17 V_OCTAMER_02_M01477 TRANSFAC + 54764167 54764183 8.0E-06 ACATTTTAATTAAGAAT 17 V_OCTAMER_02_M01477 TRANSFAC - 54764168 54764184 5.0E-06 TATTCTTAATTAAAATG 17 V_LHX3_01_M01471 TRANSFAC - 54764167 54764183 1.0E-06 ATTCTTAATTAAAATGT 17 V_LHX3_01_M01471 TRANSFAC + 54764168 54764184 2.0E-06 CATTTTAATTAAGAATA 17 V_PU1_Q4_M01172 TRANSFAC + 54761689 54761707 2.0E-06 ATTTCTCTCTTCTTTTTTT 19 V_LHX3A_01_M00510 TRANSFAC + 54764098 54764107 2.0E-06 ATTTAATTTA 10 V_LHX3A_01_M00510 TRANSFAC + 54764170 54764179 9.0E-06 TTTTAATTAA 10 V_HOXD13_01_M01404 TRANSFAC - 54764167 54764182 9.0E-06 TTCTTAATTAAAATGT 16 V_SOX21_03_M02803 TRANSFAC + 54764165 54764180 3.0E-06 TTACATTTTAATTAAG 16 V_SOX21_03_M02803 TRANSFAC - 54764165 54764180 9.0E-06 CTTAATTAAAATGTAA 16 V_ALX4_02_M01417 TRANSFAC + 54764168 54764184 3.0E-06 CATTTTAATTAAGAATA 17 V_BRN2_01_M00145 TRANSFAC + 54764226 54764241 0.0E+00 GACATTCAAAATAAGC 16 V_TCFAP2E_04_M02926 TRANSFAC - 54761703 54761716 8.0E-06 CAGGGAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 54761704 54761717 3.0E-06 TCAGGGAAAAAAAA 14 V_PAX6_02_M01391 TRANSFAC - 54764095 54764110 2.0E-06 TGATAAATTAAATAGA 16 V_PAX7_01_M01339 TRANSFAC - 54764167 54764183 4.0E-06 ATTCTTAATTAAAATGT 17 V_PAX7_01_M01339 TRANSFAC + 54764168 54764184 0.0E+00 CATTTTAATTAAGAATA 17 V_CART1_03_M01453 TRANSFAC + 54764168 54764184 1.0E-06 CATTTTAATTAAGAATA 17 V_VSX1_01_M01335 TRANSFAC + 54764168 54764184 2.0E-06 CATTTTAATTAAGAATA 17 V_NKX62_Q2_M00489 TRANSFAC - 54764095 54764106 8.0E-06 AAATTAAATAGA 12 V_HNF1_C_M00206 TRANSFAC - 54759531 54759547 6.0E-06 TGTTAAATTTTCTAAAA 17 V_ELF4_04_M02850 TRANSFAC - 54761698 54761714 5.0E-06 GGGAAAAAAAAAAAGAA 17 V_PR_Q2_M00960 TRANSFAC + 54764254 54764263 9.0E-06 AATAGAACAT 10 V_LMX1_01_M01409 TRANSFAC + 54764096 54764112 3.0E-06 CTATTTAATTTATCACT 17 V_LMX1_01_M01409 TRANSFAC - 54764167 54764183 1.0E-06 ATTCTTAATTAAAATGT 17 V_LMX1_01_M01409 TRANSFAC + 54764168 54764184 0.0E+00 CATTTTAATTAAGAATA 17 V_ZFP105_03_M02827 TRANSFAC - 54761695 54761709 5.0E-06 AAAAAAAAAGAAGAG 15 V_ZFP105_03_M02827 TRANSFAC - 54761698 54761712 1.0E-06 GAAAAAAAAAAAGAA 15 V_NKX61_01_M00424 TRANSFAC + 54764097 54764109 4.0E-06 TATTTAATTTATC 13 V_HOXB9_01_M01426 TRANSFAC - 54759476 54759491 5.0E-06 GGGGCAATAAATCTCA 16 V_HOXB6_01_M01460 TRANSFAC - 54764169 54764184 1.0E-06 TATTCTTAATTAAAAT 16 V_CDX2_01_M01449 TRANSFAC - 54759477 54759492 1.0E-06 TGGGGCAATAAATCTC 16 V_HNF1_Q6_01_M01011 TRANSFAC - 54764095 54764115 3.0E-06 TATAGTGATAAATTAAATAGA 21 V_HNF1_Q6_01_M01011 TRANSFAC - 54764160 54764180 8.0E-06 CTTAATTAAAATGTAATCCTA 21 V_SFPI1_04_M02896 TRANSFAC - 54759452 54759465 0.0E+00 CAATTTCAGGAACC 14 V_CDX1_01_M01373 TRANSFAC - 54759477 54759492 3.0E-06 TGGGGCAATAAATCTC 16 V_OCT1_08_M01354 TRANSFAC + 54764167 54764182 0.0E+00 ACATTTTAATTAAGAA 16 V_OCT1_08_M01354 TRANSFAC - 54764169 54764184 6.0E-06 TATTCTTAATTAAAAT 16 V_UNCX4.1_01_M01458 TRANSFAC + 54764167 54764183 5.0E-06 ACATTTTAATTAAGAAT 17 V_UNCX4.1_01_M01458 TRANSFAC - 54764168 54764184 1.0E-06 TATTCTTAATTAAAATG 17 V_PIT1_01_M01465 TRANSFAC - 54764093 54764109 3.0E-06 GATAAATTAAATAGATT 17 V_OTP_01_M01323 TRANSFAC - 54764168 54764184 1.0E-06 TATTCTTAATTAAAATG 17 V_NCX_02_M01420 TRANSFAC - 54764094 54764110 5.0E-06 TGATAAATTAAATAGAT 17 V_NCX_02_M01420 TRANSFAC + 54764097 54764113 9.0E-06 TATTTAATTTATCACTA 17 V_NCX_02_M01420 TRANSFAC - 54764166 54764182 4.0E-06 TTCTTAATTAAAATGTA 17 V_ARID3A_04_M02735 TRANSFAC - 54764167 54764183 0.0E+00 ATTCTTAATTAAAATGT 17 V_ARID3A_04_M02735 TRANSFAC + 54764168 54764184 0.0E+00 CATTTTAATTAAGAATA 17 V_PROP1_02_M01320 TRANSFAC - 54764167 54764183 2.0E-06 ATTCTTAATTAAAATGT 17 V_PROP1_02_M01320 TRANSFAC + 54764168 54764184 1.0E-06 CATTTTAATTAAGAATA 17 V_PMX2B_01_M01356 TRANSFAC - 54764168 54764184 3.0E-06 TATTCTTAATTAAAATG 17 V_LHX3b_01_M01971 TRANSFAC + 54764098 54764107 2.0E-06 ATTTAATTTA 10 V_LHX3b_01_M01971 TRANSFAC + 54764170 54764179 5.0E-06 TTTTAATTAA 10 V_NKX63_01_M01470 TRANSFAC + 54764167 54764183 5.0E-06 ACATTTTAATTAAGAAT 17 V_LIM1_01_M01418 TRANSFAC - 54764167 54764183 2.0E-06 ATTCTTAATTAAAATGT 17 V_LIM1_01_M01418 TRANSFAC + 54764168 54764184 0.0E+00 CATTTTAATTAAGAATA 17 V_HOXB4_01_M01424 TRANSFAC + 54764096 54764112 8.0E-06 CTATTTAATTTATCACT 17 V_HOXB4_01_M01424 TRANSFAC + 54764168 54764184 0.0E+00 CATTTTAATTAAGAATA 17 V_HOXA7_02_M01336 TRANSFAC + 54764168 54764184 1.0E-06 CATTTTAATTAAGAATA 17 V_S8_01_M00099 TRANSFAC - 54764169 54764184 9.0E-06 TATTCTTAATTAAAAT 16 V_SHOX2_01_M01415 TRANSFAC - 54764167 54764183 1.0E-05 ATTCTTAATTAAAATGT 17 V_SHOX2_01_M01415 TRANSFAC + 54764168 54764184 6.0E-06 CATTTTAATTAAGAATA 17 V_FAC1_01_M00456 TRANSFAC - 54761698 54761711 8.0E-06 AAAAAAAAAAAGAA 14 V_BRN4_01_M01473 TRANSFAC - 54764093 54764109 2.0E-06 GATAAATTAAATAGATT 17 V_IPF1_05_M01255 TRANSFAC + 54764225 54764236 9.0E-06 AGACATTCAAAA 12 V_TCFE2A_03_M02823 TRANSFAC + 54768129 54768145 8.0E-06 CTATACACGTGCACACA 17 V_TCF7_04_M02921 TRANSFAC + 54759528 54759542 6.0E-06 TCTTTTTAGAAAATT 15 V_LMX1B_01_M01363 TRANSFAC + 54764091 54764107 9.0E-06 ACAATCTATTTAATTTA 17 V_LMX1B_01_M01363 TRANSFAC - 54764092 54764108 7.0E-06 ATAAATTAAATAGATTG 17 V_LMX1B_01_M01363 TRANSFAC - 54764096 54764112 5.0E-06 AGTGATAAATTAAATAG 17 V_LMX1B_01_M01363 TRANSFAC + 54764167 54764183 0.0E+00 ACATTTTAATTAAGAAT 17 V_LMX1B_01_M01363 TRANSFAC - 54764168 54764184 0.0E+00 TATTCTTAATTAAAATG 17 V_ALX4_03_M02944 TRANSFAC + 54764168 54764184 3.0E-06 CATTTTAATTAAGAATA 17 V_HOXC5_01_M01454 TRANSFAC + 54764168 54764184 2.0E-06 CATTTTAATTAAGAATA 17 V_OCT1_07_M00248 TRANSFAC + 54764166 54764177 6.0E-06 TACATTTTAATT 12 V_SOX8_03_M02808 TRANSFAC - 54764173 54764189 5.0E-06 AAATGTATTCTTAATTA 17 V_DMRT2_01_M01147 TRANSFAC + 54764158 54764173 7.0E-06 TTTAGGATTACATTTT 16 V_SRF_06_M02916 TRANSFAC - 54761697 54761713 1.0E-06 GGAAAAAAAAAAAGAAG 17 V_SRF_06_M02916 TRANSFAC - 54761698 54761714 0.0E+00 GGGAAAAAAAAAAAGAA 17 V_SRF_06_M02916 TRANSFAC - 54761699 54761715 4.0E-06 AGGGAAAAAAAAAAAGA 17 V_SATB1_01_M01232 TRANSFAC - 54764173 54764184 1.0E-05 TATTCTTAATTA 12 V_HOXD8_01_M01432 TRANSFAC + 54764097 54764113 7.0E-06 TATTTAATTTATCACTA 17 V_LHX9_01_M01367 TRANSFAC + 54764096 54764112 5.0E-06 CTATTTAATTTATCACT 17 V_PIT1_Q6_M00802 TRANSFAC - 54764167 54764184 1.0E-06 TATTCTTAATTAAAATGT 18 V_LHX5_01_M01353 TRANSFAC - 54764167 54764183 1.0E-06 ATTCTTAATTAAAATGT 17 V_LHX5_01_M01353 TRANSFAC + 54764168 54764184 3.0E-06 CATTTTAATTAAGAATA 17 V_BRN3C_01_M01408 TRANSFAC + 54764167 54764182 4.0E-06 ACATTTTAATTAAGAA 16 V_HOXA10_01_M01464 TRANSFAC - 54759476 54759491 5.0E-06 GGGGCAATAAATCTCA 16 V_OG2_02_M01441 TRANSFAC + 54764168 54764184 4.0E-06 CATTTTAATTAAGAATA 17 V_MAFK_04_M02880 TRANSFAC + 54768112 54768126 1.0E-06 GCTAAAATTGCATGA 15 V_SOX5_07_M02909 TRANSFAC - 54764085 54764101 5.0E-06 AAATAGATTGTTTGGCA 17 V_SOX5_04_M02910 TRANSFAC + 54764168 54764182 4.0E-06 CATTTTAATTAAGAA 15 V_SOX5_04_M02910 TRANSFAC - 54764169 54764183 2.0E-06 ATTCTTAATTAAAAT 15 V_TCF3_05_M02920 TRANSFAC - 54761701 54761715 0.0E+00 AGGGAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 54761702 54761716 1.0E-06 CAGGGAAAAAAAAAA 15 V_GLIS2_04_M02863 TRANSFAC + 54764168 54764181 6.0E-06 CATTTTAATTAAGA 14 V_BHLHB2_04_M02845 TRANSFAC - 54768125 54768147 5.0E-06 TGTGTGTGCACGTGTATAGTTTC 23 V_SMAD1_01_M01590 TRANSFAC - 54759523 54759534 2.0E-06 AAAAAGAAAGGC 12 V_NF1_Q6_M00193 TRANSFAC - 54764075 54764092 5.0E-06 GTTTGGCAAAAATTCTTG 18 V_CEBPA_Q6_M01866 TRANSFAC - 54764082 54764094 9.0E-06 TTGTTTGGCAAAA 13 V_NANOG_02_M01247 TRANSFAC - 54759519 54759538 1.0E-06 TTCTAAAAAGAAAGGCAACT 20 V_HOXC8_01_M01321 TRANSFAC - 54764169 54764184 3.0E-06 TATTCTTAATTAAAAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.