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KHSRP Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8570 KH-type splicing regulatory protein chr19 - 6424322 - 6429822 6424822 Transcription Factor Binding Sites   Download all TFBS in the KHSRP promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 6426444 6426462 0.0E+00 TTACCAGCAGGTGGCATCA 19 VSX1_homeodomain_full_monomeric_11_1 SELEX + 6425276 6425286 2.0E-06 AGCCAATTAAT 11 Tp53_p53l_DBD_dimeric_18_1 SELEX - 6426072 6426089 5.0E-06 ACATGTCACACAACAAGG 18 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 6425008 6425019 3.0E-06 TGACAGCTCTCA 12 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 6425008 6425019 5.0E-06 TGAGAGCTGTCA 12 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 6425279 6425293 7.0E-06 GAATTGGATTAATTG 15 NFYA_MA0060.1 JASPAR + 6424956 6424971 5.0E-06 GGTGGCCAATCGGAGT 16 Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 6425008 6425019 4.0E-06 TGACAGCTCTCA 12 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 6425008 6425019 3.0E-06 TGAGAGCTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 6425008 6425019 4.0E-06 TGACAGCTCTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 6425008 6425019 4.0E-06 TGAGAGCTGTCA 12 MSX1_homeodomain_full_monomeric_8_1 SELEX + 6425278 6425285 7.0E-06 CCAATTAA 8 GLIS1_C2H2_DBD_monomeric_16_1 SELEX - 6425556 6425571 9.0E-06 CCACCGCCCACGTCGG 16 MSX2_homeodomain_DBD_monomeric_8_1 SELEX + 6425278 6425285 7.0E-06 CCAATTAA 8 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 6425008 6425019 4.0E-06 TGACAGCTCTCA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 6425008 6425019 1.0E-06 TGAGAGCTGTCA 12 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 6425196 6425211 6.0E-06 TAACGCCCACCCAGCC 16 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 6425329 6425338 1.0E-05 AGCAATTAAA 10 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 6425328 6425338 1.0E-06 AGCAATTAAAG 11 SOX8_HMG_full_dimeric_13_1 SELEX + 6425545 6425557 8.0E-06 GTGAATGGCAGCC 13 RAX_homeodomain_DBD_monomeric_10_1 SELEX + 6425277 6425286 6.0E-06 GCCAATTAAT 10 SP1_MA0079.2 JASPAR + 6424400 6424409 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 6424406 6424415 3.0E-06 CCCCTCCCCC 10 CTCF_C2H2_full_monomeric_17_1 SELEX + 6425455 6425471 9.0E-06 AGCGCCCACTTTTGGTG 17 CTCF_C2H2_full_monomeric_17_1 SELEX + 6426445 6426461 7.0E-06 GATGCCACCTGCTGGTA 17 ZBTB49_C2H2_DBD_monomeric_17_1 SELEX - 6424608 6424624 7.0E-06 CTCCGCCGGGCCCGCCA 17 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX + 6423691 6423703 9.0E-06 AGCCCCGGAGGCA 13 BSX_homeodomain_DBD_monomeric_8_1 SELEX + 6425278 6425285 7.0E-06 CCAATTAA 8 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 6424812 6424827 6.0E-06 TTCCCAGAGTGCTCCG 16 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 6425329 6425338 8.0E-06 AGCAATTAAA 10 Msx3_homeodomain_DBD_monomeric_8_1 SELEX + 6425278 6425285 7.0E-06 CCAATTAA 8 TGIF2LX_MEIS_full_dimeric_12_1 SELEX + 6425008 6425019 3.0E-06 TGACAGCTCTCA 12 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 6425008 6425019 2.0E-06 TGAGAGCTGTCA 12 GSC_homeodomain_full_monomeric_10_1 SELEX - 6425525 6425534 8.0E-06 GCTAATCCCC 10 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 6425008 6425019 4.0E-06 TGACAGCTCTCA 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 6425008 6425019 9.0E-06 TGAGAGCTGTCA 12 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 6425328 6425338 3.0E-06 AGCAATTAAAG 11 GLIS3_C2H2_DBD_monomeric_14_1 SELEX + 6425738 6425751 5.0E-06 GACCCCCCATCTAG 14 PLAG1_MA0163.1 JASPAR + 6424171 6424184 0.0E+00 GGGGGCTAAGGGGG 14 PLAG1_MA0163.1 JASPAR + 6424172 6424185 3.0E-06 GGGGCTAAGGGGGG 14 MNX1_homeodomain_DBD_monomeric_10_1 SELEX - 6425329 6425338 4.0E-06 AGCAATTAAA 10 TBX1_TBX_DBD_dimeric_20_1 SELEX - 6425833 6425852 9.0E-06 GGGTGTGATCGAGGCTGTGA 20 TBX1_TBX_DBD_dimeric_20_1 SELEX - 6425847 6425866 8.0E-06 GGGTGTGAAGTGAGGGGTGT 20 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 6425008 6425019 1.0E-06 TGACAGCTCTCA 12 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 6425008 6425019 2.0E-06 TGAGAGCTGTCA 12 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 6424390 6424399 6.0E-06 CGCACGTGAC 10 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 6425328 6425338 1.0E-06 AGCAATTAAAG 11 V_MSX3_01_M01341 TRANSFAC + 6425273 6425288 8.0E-06 GGCAGCCAATTAATCC 16 V_MSX3_01_M01341 TRANSFAC - 6425327 6425342 7.0E-06 GGGAAGCAATTAAAGT 16 V_PREP1_01_M01459 TRANSFAC - 6425004 6425019 4.0E-06 TGAGAGCTGTCAGTCA 16 V_TCF3_01_M01594 TRANSFAC - 6425445 6425457 5.0E-06 GCTTTGATTTCCT 13 V_DEC2_Q2_M01843 TRANSFAC - 6424391 6424400 9.0E-06 GGTCACGTGC 10 V_BTEB3_Q5_M01865 TRANSFAC - 6423735 6423747 9.0E-06 GAATGGGAGGACT 13 V_MAX_Q6_M01830 TRANSFAC - 6425640 6425651 6.0E-06 CGGGCCACGTGC 12 V_HNF1_02_M01379 TRANSFAC + 6425340 6425356 5.0E-06 CCCTTGTTAACCAGAAT 17 V_EVI1_04_M00081 TRANSFAC - 6425354 6425368 5.0E-06 GGATAGAAAAGGATT 15 V_TCF4_Q5_01_M02033 TRANSFAC + 6425450 6425459 7.0E-06 ATCAAAGCGC 10 V_EBOX_Q6_01_M01034 TRANSFAC - 6425148 6425157 4.0E-06 CCACGTGACT 10 V_OTX_Q1_M01117 TRANSFAC - 6425280 6425287 5.0E-06 GATTAATT 8 V_HNF4_Q6_M00967 TRANSFAC - 6425323 6425331 2.0E-06 AAAGTCCAA 9 V_AP2_Q6_01_M00915 TRANSFAC + 6424437 6424449 6.0E-06 CGCCCCTCAGGCC 13 V_MYB_05_M02779 TRANSFAC - 6425130 6425146 7.0E-06 TTCAGAACCGTCAATCT 17 V_SP1_03_M02281 TRANSFAC + 6424400 6424409 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 6424406 6424415 3.0E-06 CCCCTCCCCC 10 V_REX1_01_M01695 TRANSFAC - 6425382 6425391 7.0E-06 TCAGCCATTG 10 V_HMBOX1_01_M01456 TRANSFAC - 6425342 6425358 4.0E-06 GGATTCTGGTTAACAAG 17 V_ARX_01_M01423 TRANSFAC + 6425273 6425289 9.0E-06 GGCAGCCAATTAATCCA 17 V_STAF_01_M00262 TRANSFAC - 6424808 6424829 3.0E-06 GGTTCCCAGAGTGCTCCGCGGC 22 V_STAF_01_M00262 TRANSFAC + 6425345 6425366 6.0E-06 GTTAACCAGAATCCTTTTCTAT 22 V_NKX61_01_M00424 TRANSFAC + 6425327 6425339 2.0E-06 ACTTTAATTGCTT 13 V_E12_Q6_M00693 TRANSFAC - 6426447 6426457 8.0E-06 AGCAGGTGGCA 11 V_KROX_Q6_M00982 TRANSFAC + 6424401 6424414 0.0E+00 CCCGCCCCCTCCCC 14 V_HOXB9_01_M01426 TRANSFAC - 6425325 6425340 2.0E-06 GAAGCAATTAAAGTCC 16 V_SP1_Q6_M00196 TRANSFAC - 6424398 6424410 3.0E-06 AGGGGGCGGGGGT 13 V_MYBL1_03_M02780 TRANSFAC - 6425130 6425146 7.0E-06 TTCAGAACCGTCAATCT 17 V_NKX52_01_M01315 TRANSFAC + 6425274 6425290 8.0E-06 GCAGCCAATTAATCCAA 17 V_NKX52_01_M01315 TRANSFAC - 6425325 6425341 1.0E-05 GGAAGCAATTAAAGTCC 17 V_GLIS2_03_M02759 TRANSFAC + 6425734 6425749 5.0E-06 TCTCGACCCCCCATCT 16 V_REST_01_M01256 TRANSFAC + 6425903 6425924 5.0E-06 TCAAGCTCCTATCCTAGGTCCT 22 V_RAX_01_M01389 TRANSFAC - 6425273 6425289 2.0E-06 TGGATTAATTGGCTGCC 17 V_PITX3_01_M01343 TRANSFAC + 6425523 6425538 1.0E-06 GAGGGGATTAGCGGGA 16 V_SP1SP3_Q4_M01219 TRANSFAC + 6424402 6424412 1.0E-06 CCGCCCCCTCC 11 V_HMX1_02_M01481 TRANSFAC + 6425274 6425290 9.0E-06 GCAGCCAATTAATCCAA 17 V_HMX1_02_M01481 TRANSFAC - 6425325 6425341 5.0E-06 GGAAGCAATTAAAGTCC 17 V_GRE_C_M00205 TRANSFAC - 6425769 6425784 7.0E-06 GGTTCCTTGAGTCCTG 16 V_WHN_B_M00332 TRANSFAC - 6424492 6424502 1.0E-06 AAGGACGCTTT 11 V_PBX1_05_M01967 TRANSFAC + 6425002 6425015 4.0E-06 AGTGACTGACAGCT 14 V_CTCF_02_M01259 TRANSFAC - 6426446 6426465 1.0E-06 GTCTTACCAGCAGGTGGCAT 20 V_CTCF_01_M01200 TRANSFAC - 6426444 6426463 1.0E-06 CTTACCAGCAGGTGGCATCA 20 V_ARX_02_M02945 TRANSFAC + 6425273 6425289 9.0E-06 GGCAGCCAATTAATCCA 17 V_HNF4A_02_M02868 TRANSFAC - 6425320 6425335 6.0E-06 AATTAAAGTCCAAAGC 16 V_SP4_Q5_M01273 TRANSFAC + 6424399 6424409 5.0E-06 CCCCCGCCCCC 11 V_CAAT_01_M00254 TRANSFAC + 6425230 6425241 8.0E-06 ACAAGCCAATGA 12 V_TAL1_01_M01591 TRANSFAC + 6425724 6425736 2.0E-06 CCTTCTTCTCTCT 13 V_BARHL1_01_M01332 TRANSFAC + 6425273 6425288 4.0E-06 GGCAGCCAATTAATCC 16 V_PLAG1_01_M01778 TRANSFAC + 6424172 6424187 4.0E-06 GGGGCTAAGGGGGGGG 16 V_AIRE_01_M00999 TRANSFAC - 6425272 6425297 4.0E-06 TCAGGAATTGGATTAATTGGCTGCCC 26 V_SMAD3_03_M02794 TRANSFAC - 6425594 6425610 2.0E-06 CTAACCCAGACATCAGG 17 V_MSX1_02_M01412 TRANSFAC + 6425273 6425288 7.0E-06 GGCAGCCAATTAATCC 16 V_NFY_01_M00287 TRANSFAC + 6424956 6424971 8.0E-06 GGTGGCCAATCGGAGT 16 V_NRF2_Q4_M00821 TRANSFAC + 6425142 6425154 9.0E-06 CTGAAGAGTCACG 13 V_PBX1_02_M00124 TRANSFAC - 6425126 6425140 8.0E-06 ACCGTCAATCTAATT 15 V_STAT6_02_M00500 TRANSFAC - 6425445 6425452 1.0E-05 GATTTCCT 8 V_ZFP281_01_M01597 TRANSFAC - 6424406 6424416 7.0E-06 CGGGGGAGGGG 11 V_SOX14_04_M02901 TRANSFAC + 6425043 6425059 4.0E-06 GTGCTGGGCGGGCAAAT 17 V_GSC_01_M01428 TRANSFAC - 6425522 6425538 8.0E-06 TCCCGCTAATCCCCTCG 17 V_ALX3_01_M01355 TRANSFAC - 6425273 6425289 6.0E-06 TGGATTAATTGGCTGCC 17 V_NKX12_01_M01427 TRANSFAC + 6425273 6425289 6.0E-06 GGCAGCCAATTAATCCA 17 V_BSX_01_M01442 TRANSFAC + 6425275 6425290 1.0E-05 CAGCCAATTAATCCAA 16 V_SP1_Q2_01_M00933 TRANSFAC + 6424400 6424409 4.0E-06 CCCCGCCCCC 10 V_AP2ALPHA_02_M01045 TRANSFAC - 6423691 6423705 8.0E-06 AATGCCTCCGGGGCT 15 V_UF1H3BETA_Q6_M01068 TRANSFAC - 6424405 6424418 1.0E-06 GGCGGGGGAGGGGG 14 V_HMX3_02_M01413 TRANSFAC - 6425325 6425341 6.0E-06 GGAAGCAATTAAAGTCC 17 V_NFYA_Q5_M02106 TRANSFAC + 6424958 6424971 6.0E-06 TGGCCAATCGGAGT 14 V_SP1_Q4_01_M00932 TRANSFAC - 6424398 6424410 3.0E-06 AGGGGGCGGGGGT 13 V_ALX3_02_M02943 TRANSFAC - 6425273 6425289 6.0E-06 TGGATTAATTGGCTGCC 17 V_AR_Q2_M00447 TRANSFAC + 6425750 6425764 4.0E-06 AGAGCGTCCAGTTCT 15 V_PAX4_04_M00380 TRANSFAC - 6425308 6425337 3.0E-06 GCAATTAAAGTCCAAAGCCAACCTCATCAC 30

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.