Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CHST1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8534 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 chr11 - 45686706 - 45692206 45687206 Transcription Factor Binding Sites   Download all TFBS in the CHST1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 45684634 45684649 7.0E-06 ATGAATATCAAATGCT 16 SP8_C2H2_DBD_monomeric_12_1 SELEX + 45687344 45687355 1.0E-06 GCCACGCCCACC 12 Sox1_HMG_DBD_dimeric_14_1 SELEX + 45688639 45688652 2.0E-06 GGAACAAACATTCA 14 Sox1_HMG_DBD_dimeric_14_1 SELEX - 45688639 45688652 4.0E-06 TGAATGTTTGTTCC 14 SP3_C2H2_DBD_monomeric_11_1 SELEX + 45687344 45687354 1.0E-06 GCCACGCCCAC 11 SOX10_HMG_full_dimeric_16_1 SELEX - 45688607 45688622 3.0E-06 AACAATGTGCAATTAT 16 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 45688597 45688614 1.0E-06 GCAATTATTAAGTACTCA 18 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 45687344 45687354 3.0E-06 GCCACGCCCAC 11 SOX9_HMG_full_dimeric_16_1 SELEX - 45688607 45688622 4.0E-06 AACAATGTGCAATTAT 16 RFX4_RFX_DBD_dimeric_16_1 SELEX + 45684576 45684591 0.0E+00 TGTTTCCATGGAAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 45684576 45684591 0.0E+00 GGTTTCCATGGAAACA 16 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 45687343 45687356 2.0E-06 AGCCACGCCCACCA 14 SOX8_HMG_DBD_dimeric_16_1 SELEX - 45688607 45688622 2.0E-06 AACAATGTGCAATTAT 16 EWSR1-FLI1_MA0149.1 JASPAR - 45687631 45687648 2.0E-06 GGAAGGAGGAAAGGCTAG 18 Pax4_MA0068.1 JASPAR - 45688593 45688622 4.0E-06 AACAATGTGCAATTATTAAGTACTCACCCC 30 ZIC4_C2H2_DBD_monomeric_15_1 SELEX + 45684084 45684098 2.0E-06 GACCACCTGCTGGGA 15 Klf4_MA0039.2 JASPAR - 45687344 45687353 1.0E-05 TGGGCGTGGC 10 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 45684576 45684591 0.0E+00 TGTTTCCATGGAAACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 45684576 45684591 0.0E+00 GGTTTCCATGGAAACA 16 NFATC1_NFAT_full_dimeric_14_1 SELEX + 45684577 45684590 0.0E+00 GTTTCCATGGAAAC 14 NFATC1_NFAT_full_dimeric_14_1 SELEX - 45684577 45684590 0.0E+00 GTTTCCATGGAAAC 14 Foxq1_MA0040.1 JASPAR - 45682510 45682520 5.0E-06 AAATGTTTAGA 11 ZIC3_C2H2_full_monomeric_15_1 SELEX + 45684084 45684098 5.0E-06 GACCACCTGCTGGGA 15 SP4_C2H2_full_monomeric_17_1 SELEX + 45687341 45687357 4.0E-06 GCAGCCACGCCCACCAC 17 SP1_C2H2_DBD_monomeric_11_1 SELEX + 45687344 45687354 4.0E-06 GCCACGCCCAC 11 RFX2_RFX_DBD_dimeric_16_1 SELEX + 45684576 45684591 0.0E+00 TGTTTCCATGGAAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 45684576 45684591 0.0E+00 GGTTTCCATGGAAACA 16 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 45688597 45688614 4.0E-06 GCAATTATTAAGTACTCA 18 POU1F1_POU_DBD_monomeric_17_1 SELEX + 45684631 45684647 1.0E-06 ATTATGAATATCAAATG 17 RFX5_RFX_DBD_dimeric_16_3 SELEX - 45684576 45684591 0.0E+00 GGTTTCCATGGAAACA 16 Foxd3_MA0041.1 JASPAR - 45688640 45688651 1.0E-06 GAATGTTTGTTC 12 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 45687343 45687357 7.0E-06 AGCCACGCCCACCAC 15 EN1_homeodomain_full_dimeric_14_1 SELEX + 45688597 45688610 8.0E-06 TGAGTACTTAATAA 14 JDP2_bZIP_full_dimeric_9_1 SELEX - 45685451 45685459 7.0E-06 ATGACTCAC 9 Myf_MA0055.1 JASPAR + 45684367 45684378 2.0E-06 CAGCAGCAGCTG 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 45688597 45688614 4.0E-06 GCAATTATTAAGTACTCA 18 ZIC1_C2H2_full_monomeric_14_1 SELEX + 45684084 45684097 3.0E-06 GACCACCTGCTGGG 14 V_TGIF_01_M00418 TRANSFAC - 45683242 45683252 9.0E-06 AGCTGTCAGAG 11 V_E2A_Q6_01_M02088 TRANSFAC + 45684084 45684096 2.0E-06 GACCACCTGCTGG 13 V_PREP1_01_M01459 TRANSFAC - 45683241 45683256 8.0E-06 AACCAGCTGTCAGAGC 16 V_POU3F3_01_M03090 TRANSFAC + 45684629 45684645 4.0E-06 AGATTATGAATATCAAA 17 V_TCFE2A_04_M02927 TRANSFAC + 45688740 45688756 3.0E-06 CAGAGCAGATGGTATGA 17 V_CHOP_01_M00249 TRANSFAC + 45687606 45687618 1.0E-06 GTGTGCAATACCC 13 V_FOXD3_01_M00130 TRANSFAC - 45688640 45688651 1.0E-06 GAATGTTTGTTC 12 V_ZTA_Q2_M00711 TRANSFAC + 45684592 45684604 9.0E-06 ATACAGTGACTCA 13 V_EGR_Q6_M00807 TRANSFAC - 45687317 45687327 6.0E-06 GTGGGGGCGGG 11 V_OCTAMER_01_M01324 TRANSFAC + 45684629 45684645 4.0E-06 AGATTATGAATATCAAA 17 V_GKLF_02_M01588 TRANSFAC + 45687344 45687355 3.0E-06 GCCACGCCCACC 12 V_AFP1_Q6_M00616 TRANSFAC + 45688606 45688616 2.0E-06 AATAATTGCAC 11 V_SP1_02_M01303 TRANSFAC - 45687226 45687236 5.0E-06 GGGGTGGGGAG 11 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 45687322 45687337 7.0E-06 CGGCGGGTGGGTGGGG 16 V_PU1_Q4_M01172 TRANSFAC + 45690875 45690893 6.0E-06 TGATCCCATTTCCTCCTCT 19 V_LDSPOLYA_B_M00317 TRANSFAC + 45683184 45683199 1.0E-06 AATCTGTTTTCCCATC 16 V_TGIF2_01_M01407 TRANSFAC - 45683241 45683256 2.0E-06 AACCAGCTGTCAGAGC 16 V_PAX5_02_M00144 TRANSFAC + 45685441 45685468 7.0E-06 AATGTGATGTGTGAGTCATGACGATGAA 28 V_TAL1_Q6_M00993 TRANSFAC - 45688743 45688752 7.0E-06 ACCATCTGCT 10 V_BACH1_01_M00495 TRANSFAC + 45685448 45685462 7.0E-06 TGTGTGAGTCATGAC 15 V_FOXA2_02_M02853 TRANSFAC + 45684634 45684648 9.0E-06 ATGAATATCAAATGC 15 V_MYF_01_M01302 TRANSFAC + 45684367 45684378 2.0E-06 CAGCAGCAGCTG 12 V_TGIF_02_M01346 TRANSFAC + 45683240 45683256 7.0E-06 AGCTCTGACAGCTGGTT 17 V_ZFP410_03_M02832 TRANSFAC + 45683262 45683278 9.0E-06 GGGCATGGGATGTCTTT 17 V_HNF3G_Q4_M02015 TRANSFAC - 45688641 45688648 7.0E-06 TGTTTGTT 8 V_SOX8_04_M02912 TRANSFAC - 45684628 45684641 7.0E-06 ATATTCATAATCTG 14 Ddit3_Cebpa_MA0019.1 JASPAR + 45687606 45687617 2.0E-06 GTGTGCAATACC 12 V_KROX_Q6_M00982 TRANSFAC + 45687317 45687330 1.0E-06 CCCGCCCCCACCCA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 45684404 45684417 1.0E-05 GTGGGTGGGGAGAG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 45687224 45687237 2.0E-06 AGGGGTGGGGAGGA 14 V_JUNDM2_04_M02876 TRANSFAC + 45685447 45685462 9.0E-06 ATGTGTGAGTCATGAC 16 V_JUNDM2_04_M02876 TRANSFAC - 45685448 45685463 3.0E-06 CGTCATGACTCACACA 16 V_MUSCLE_INI_B_M00321 TRANSFAC + 45687191 45687211 2.0E-06 TCCCGGCTCCACCCCCGAGCC 21 V_MUSCLE_INI_B_M00321 TRANSFAC + 45687316 45687336 0.0E+00 GCCCGCCCCCACCCACCCGCC 21 V_TGIF1_01_M03111 TRANSFAC + 45683240 45683256 7.0E-06 AGCTCTGACAGCTGGTT 17 V_TAL1BETAITF2_01_M00070 TRANSFAC + 45688740 45688755 9.0E-06 CAGAGCAGATGGTATG 16 V_BCL6B_04_M02844 TRANSFAC + 45684447 45684462 4.0E-06 TTGCCCACCCCTCACA 16 V_ELF1_Q6_M00746 TRANSFAC - 45690882 45690893 5.0E-06 AGAGGAGGAAAT 12 V_AP1_Q4_01_M00926 TRANSFAC + 45685452 45685459 1.0E-05 TGAGTCAT 8 V_MYOD_Q6_02_M02100 TRANSFAC - 45683245 45683253 4.0E-06 CAGCTGTCA 9 V_HOXB8_01_M01451 TRANSFAC - 45688603 45688618 5.0E-06 ATGTGCAATTATTAAG 16 V_SMAD4_04_M02898 TRANSFAC + 45684486 45684502 4.0E-06 CAAGTCCCGCCACACTT 17 V_NKX3A_02_M01383 TRANSFAC - 45685463 45685479 8.0E-06 TTCAAAGTGCTTTCATC 17 V_NKX3A_02_M01383 TRANSFAC + 45685464 45685480 9.0E-06 ATGAAAGCACTTTGAAA 17 V_NKX3A_02_M01383 TRANSFAC + 45688594 45688610 4.0E-06 GGGTGAGTACTTAATAA 17 V_NKX61_02_M01469 TRANSFAC + 45688602 45688617 9.0E-06 ACTTAATAATTGCACA 16 V_TFIIA_Q6_M00707 TRANSFAC + 45683274 45683285 4.0E-06 TCTTTAAGGAGC 12 V_FRA1_Q5_M01267 TRANSFAC + 45685452 45685459 1.0E-05 TGAGTCAT 8 V_E47_01_M00002 TRANSFAC - 45684082 45684096 1.0E-06 CCAGCAGGTGGTCCT 15 V_NFAT2_02_M01749 TRANSFAC - 45684578 45684588 0.0E+00 TTCCATGGAAA 11 V_NFAT2_02_M01749 TRANSFAC + 45684579 45684589 0.0E+00 TTCCATGGAAA 11 V_TITF1_Q3_M00432 TRANSFAC + 45687662 45687671 3.0E-06 TCTCAAGTGT 10 V_EWSR1FLI1_01_M02252 TRANSFAC - 45687631 45687648 2.0E-06 GGAAGGAGGAAAGGCTAG 18 V_SP1_Q2_01_M00933 TRANSFAC + 45687647 45687656 7.0E-06 CCCCGCCCCT 10 V_OTX3_01_M01403 TRANSFAC + 45684623 45684639 6.0E-06 TGAACCAGATTATGAAT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.