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COL27A1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 85301 collagen, type XXVII, alpha 1 chr9 + 116913230 - 116918730 116918230 Transcription Factor Binding Sites   Download all TFBS in the COL27A1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 116916164 116916182 9.0E-06 CTTCCTGCAGAGGGCAGAG 19 CTCF_MA0139.1 JASPAR + 116917702 116917720 1.0E-06 CGGCCGGCAGGGGGCAGCA 19 CTCF_MA0139.1 JASPAR + 116917712 116917730 7.0E-06 GGGGCAGCAGGGGGCAGCA 19 NFIA_NFI_full_dimeric_15_1 SELEX + 116914024 116914038 7.0E-06 CTGGCTCTGCGCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 116914024 116914038 1.0E-06 TTGGCGCAGAGCCAG 15 RFX4_RFX_DBD_dimeric_16_1 SELEX - 116921592 116921607 4.0E-06 AGTTTCCCTGGCTACA 16 ZNF435_C2H2_full_dimeric_18_1 SELEX - 116920208 116920225 0.0E+00 GCCGTTTACTGAGCACTT 18 EWSR1-FLI1_MA0149.1 JASPAR + 116917748 116917765 1.0E-06 GGGAGGAGGGAAGGTGGA 18 NFIX_NFI_full_dimeric_15_2 SELEX + 116914024 116914038 5.0E-06 CTGGCTCTGCGCCAA 15 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX + 116918740 116918758 1.0E-06 TTTCTAGGTCACCAGGTCT 19 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX - 116914062 116914073 7.0E-06 TCTCCCCACAAG 12 SP1_MA0079.2 JASPAR + 116916328 116916337 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 116917638 116917647 9.0E-06 CCCCTCCTCC 10 FOXI1_MA0042.1 JASPAR + 116920229 116920240 4.0E-06 TGGTATTTGTAT 12 PRDM4_C2H2_full_monomeric_13_1 SELEX + 116918740 116918752 5.0E-06 TTTCTAGGTCACC 13 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 116918906 116918920 5.0E-06 AAAAAGTGAGAGCCA 15 NFIB_NFI_full_dimeric_15_1 SELEX - 116914024 116914038 1.0E-06 TTGGCGCAGAGCCAG 15 GBX2_homeodomain_DBD_dimeric_14_1 SELEX - 116920207 116920220 1.0E-05 TTACTGAGCACTTA 14 RORA_1_MA0071.1 JASPAR + 116918741 116918750 7.0E-06 TTCTAGGTCA 10 NFE2L2_MA0150.1 JASPAR - 116919413 116919423 9.0E-06 ATGAGTCAGCA 11 RREB1_MA0073.1 JASPAR + 116919341 116919360 2.0E-06 CACCCCCTCACCACAACACA 20 RREB1_MA0073.1 JASPAR + 116919349 116919368 0.0E+00 CACCACAACACACACACACA 20 RREB1_MA0073.1 JASPAR + 116919351 116919370 0.0E+00 CCACAACACACACACACACA 20 V_MEQ_01_M02049 TRANSFAC + 116919355 116919363 7.0E-06 AACACACAC 9 V_FOXP1_01_M00987 TRANSFAC - 116919366 116919385 5.0E-06 ATGTGTGTGTGTGTGTGTGT 20 V_FOXP1_01_M00987 TRANSFAC - 116919368 116919387 4.0E-06 GTATGTGTGTGTGTGTGTGT 20 V_CDP_03_M01342 TRANSFAC + 116917925 116917941 7.0E-06 AAAGTTTGATCATCTCT 17 V_NFKB_C_M00208 TRANSFAC + 116919005 116919016 4.0E-06 AGGGACTCTCCC 12 V_ER_Q6_02_M00959 TRANSFAC - 116920305 116920315 5.0E-06 CAGGTCATCGT 11 V_AP1_Q2_M00173 TRANSFAC + 116919414 116919424 6.0E-06 GCTGACTCATT 11 V_NFKB_Q6_01_M00774 TRANSFAC - 116919005 116919020 8.0E-06 TCCTGGGAGAGTCCCT 16 V_BCL6_Q3_01_M02085 TRANSFAC + 116921679 116921688 4.0E-06 CTTCCTAGGA 10 V_BCL6_Q3_01_M02085 TRANSFAC - 116921681 116921690 4.0E-06 CTTCCTAGGA 10 V_NF1A_Q6_M02103 TRANSFAC + 116914024 116914039 2.0E-06 CTGGCTCTGCGCCAAG 16 V_RORA1_01_M00156 TRANSFAC + 116918739 116918751 4.0E-06 GTTTCTAGGTCAC 13 V_AR_Q6_01_M01996 TRANSFAC + 116918708 116918722 4.0E-06 TTTCTATCTGTTCTT 15 V_AP2_Q6_01_M00915 TRANSFAC + 116917828 116917840 6.0E-06 CCTCCCCCAGGCC 13 V_CUX1_03_M02958 TRANSFAC + 116917925 116917941 7.0E-06 AAAGTTTGATCATCTCT 17 V_SP1_03_M02281 TRANSFAC + 116916328 116916337 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 116917638 116917647 9.0E-06 CCCCTCCTCC 10 V_NERF_Q2_M00531 TRANSFAC + 116916173 116916190 2.0E-06 CTGCAGGAAGCAGCGCAC 18 V_SP1_02_M01303 TRANSFAC - 116916326 116916336 3.0E-06 GGGGCGGGGAG 11 V_PU1_Q4_M01172 TRANSFAC + 116917812 116917830 7.0E-06 TCCTTCCTTTTCCTCTCCT 19 V_PU1_Q4_M01172 TRANSFAC + 116917950 116917968 6.0E-06 TTTTCTTGCTTCTTCTTCC 19 V_LYF1_01_M00141 TRANSFAC + 116921670 116921678 9.0E-06 TTTGGGAAA 9 V_AP4_Q6_01_M00927 TRANSFAC - 116920224 116920232 6.0E-06 ACCAGCTGC 9 V_ZFP691_03_M02833 TRANSFAC + 116920204 116920220 2.0E-06 TAATAAGTGCTCAGTAA 17 V_LDSPOLYA_B_M00317 TRANSFAC + 116918854 116918869 8.0E-06 TGTCTGTGTTTCCTGC 16 V_LDSPOLYA_B_M00317 TRANSFAC + 116920314 116920329 1.0E-06 TGTCTGTGTTCCCATG 16 V_AR_03_M00956 TRANSFAC - 116913997 116914023 5.0E-06 TGACTGGGCATGAACTGTTCTGATGGA 27 V_AP1_Q6_M00174 TRANSFAC + 116919414 116919424 2.0E-06 GCTGACTCATT 11 V_ROAZ_01_M00467 TRANSFAC + 116916151 116916164 1.0E-06 GCAGCCATGGGTGC 14 V_ROAZ_01_M00467 TRANSFAC - 116916151 116916164 1.0E-06 GCACCCATGGCTGC 14 V_HELIOSA_02_M01004 TRANSFAC - 116916240 116916250 5.0E-06 TTTAGGAAAAG 11 V_HELIOSA_02_M01004 TRANSFAC + 116919302 116919312 7.0E-06 TCTTGGAAAAA 11 V_E12_Q6_M00693 TRANSFAC + 116921733 116921743 6.0E-06 GGCAGGTGCCA 11 V_ZBP89_Q4_M01816 TRANSFAC + 116917827 116917836 2.0E-06 TCCTCCCCCA 10 V_FOXK1_04_M02856 TRANSFAC + 116919347 116919361 3.0E-06 CTCACCACAACACAC 15 V_MAZ_Q6_01_M02023 TRANSFAC - 116916324 116916337 2.0E-06 GGGGGCGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 116917749 116917762 8.0E-06 GGAGGAGGGAAGGT 14 V_MAZ_Q6_01_M02023 TRANSFAC - 116917822 116917835 0.0E+00 GGGGGAGGAGAGGA 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 116920232 116920242 4.0E-06 TATTTGTATTA 11 V_BCL6_Q3_M01171 TRANSFAC + 116918739 116918748 1.0E-06 GTTTCTAGGT 10 V_ASCL2_03_M02737 TRANSFAC - 116920219 116920235 7.0E-06 AATACCAGCTGCCGTTT 17 V_GR_01_M00955 TRANSFAC + 116918701 116918727 6.0E-06 GTCTCCGTTTCTATCTGTTCTTGTGAA 27 V_SP1SP3_Q4_M01219 TRANSFAC - 116917638 116917648 1.0E-05 CCCCCTCCTCC 11 V_GR_Q6_M00192 TRANSFAC + 116918705 116918723 6.0E-06 CCGTTTCTATCTGTTCTTG 19 V_RREB1_01_M00257 TRANSFAC - 116919118 116919131 9.0E-06 CCACACACACCCAC 14 V_AP1_C_M00199 TRANSFAC - 116919415 116919423 3.0E-06 ATGAGTCAG 9 V_NKX3A_01_M00451 TRANSFAC + 116917079 116917090 8.0E-06 GAATAAGTGTAA 12 V_MAFK_Q3_M02022 TRANSFAC - 116919412 116919422 6.0E-06 TGAGTCAGCAG 11 V_AP1_01_M00517 TRANSFAC - 116919413 116919425 0.0E+00 AAATGAGTCAGCA 13 V_CTCF_02_M01259 TRANSFAC - 116916166 116916185 5.0E-06 CTGCTTCCTGCAGAGGGCAG 20 V_CTCF_02_M01259 TRANSFAC + 116917699 116917718 1.0E-05 CTCCGGCCGGCAGGGGGCAG 20 V_CTCF_01_M01200 TRANSFAC - 116916164 116916183 4.0E-06 GCTTCCTGCAGAGGGCAGAG 20 V_CTCF_01_M01200 TRANSFAC + 116917701 116917720 0.0E+00 CCGGCCGGCAGGGGGCAGCA 20 V_CTCF_01_M01200 TRANSFAC + 116917711 116917730 1.0E-06 GGGGGCAGCAGGGGGCAGCA 20 V_CTCF_01_M01200 TRANSFAC + 116917721 116917740 3.0E-06 GGGGGCAGCAGAGGGCGGCC 20 V_BLIMP1_Q6_M01066 TRANSFAC + 116921594 116921609 6.0E-06 TAGCCAGGGAAACTGA 16 V_AP1_Q2_01_M00924 TRANSFAC + 116919416 116919427 7.0E-06 TGACTCATTTTC 12 V_FOXO1_Q5_M01216 TRANSFAC - 116920098 116920106 8.0E-06 AAAAACAAG 9 V_TFIII_Q6_M00706 TRANSFAC - 116920992 116921000 6.0E-06 AGAGGGAGG 9 V_GR_Q6_02_M01836 TRANSFAC + 116918711 116918723 1.0E-06 CTATCTGTTCTTG 13 V_SP4_Q5_M01273 TRANSFAC + 116916327 116916337 9.0E-06 TCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 116919330 116919340 7.0E-06 CCCCCGCCCCG 11 V_PTF1BETA_Q6_M00657 TRANSFAC - 116916112 116916125 8.0E-06 GGGGAACTGGCAGG 14 V_AP4_01_M00005 TRANSFAC - 116921016 116921033 2.0E-06 TAAGTCAGCTCCAGGCCT 18 V_FAC1_01_M00456 TRANSFAC + 116919349 116919362 1.0E-06 CACCACAACACACA 14 V_GATA1_04_M00128 TRANSFAC - 116921659 116921671 9.0E-06 AACTGATAAAGAA 13 V_CAAT_C_M00200 TRANSFAC + 116916205 116916229 8.0E-06 CCCAACCCCCCTACCTCCCCTCTCT 25 V_NKX3A_02_M01383 TRANSFAC + 116920204 116920220 8.0E-06 TAATAAGTGCTCAGTAA 17 V_PARP_Q3_M01211 TRANSFAC + 116919304 116919313 8.0E-06 TTGGAAAAAG 10 V_TFIIA_Q6_M00707 TRANSFAC + 116917631 116917642 4.0E-06 TATACAAGGAGG 12 V_FPM315_01_M01587 TRANSFAC + 116917746 116917757 2.0E-06 CGGGGAGGAGGG 12 V_ZFP281_01_M01597 TRANSFAC - 116916328 116916338 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 116917826 116917836 9.0E-06 TGGGGGAGGAG 11 V_HFH3_01_M00289 TRANSFAC + 116920229 116920241 3.0E-06 TGGTATTTGTATT 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 116917748 116917765 1.0E-06 GGGAGGAGGGAAGGTGGA 18 V_NFE2_Q6_M02104 TRANSFAC - 116919409 116919424 1.0E-06 AATGAGTCAGCAGTGT 16 V_NFE2_01_M00037 TRANSFAC + 116919413 116919423 1.0E-06 TGCTGACTCAT 11 V_PR_02_M00957 TRANSFAC - 116913997 116914023 4.0E-06 TGACTGGGCATGAACTGTTCTGATGGA 27 V_PR_02_M00957 TRANSFAC + 116918701 116918727 4.0E-06 GTCTCCGTTTCTATCTGTTCTTGTGAA 27 V_IRF1_01_M00062 TRANSFAC - 116921622 116921634 6.0E-06 CAAAAACGACACA 13 V_CTF1_01_M01196 TRANSFAC + 116914025 116914038 3.0E-06 TGGCTCTGCGCCAA 14 V_SP1_Q2_01_M00933 TRANSFAC + 116916328 116916337 4.0E-06 CCCCGCCCCC 10 V_NFE2L2_01_M02263 TRANSFAC - 116919413 116919423 9.0E-06 ATGAGTCAGCA 11 V_GATA5_03_M02756 TRANSFAC - 116921657 116921673 2.0E-06 CAAACTGATAAAGAAAG 17 V_FOXO4_01_M00472 TRANSFAC - 116920096 116920106 5.0E-06 AAAAACAAGCA 11 V_P300_01_M00033 TRANSFAC + 116921721 116921734 7.0E-06 TCAAGGAGTGAGGG 14 TLX1_NFIC_MA0119.1 JASPAR + 116914025 116914038 3.0E-06 TGGCTCTGCGCCAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.