Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

CGNL1


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
84952 cingulin-like 1 chr15 +57663702 - 57669202 57668702

Transcription Factor Binding Sites

 
Download all TFBS in the CGNL1 promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
EBF1_EBF_full_dimeric_14_1 SELEX - 57669002 57669015 7.0E-06 GTTCCCCAGGGATC 14
FOXO3_MA0157.1 JASPAR - 57669872 57669879 7.0E-06 TGTAAACA 8
SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 57669795 57669807 2.0E-06 AATCAACAGGTTC 13
ZNF238_C2H2_full_monomeric_13_1 SELEX - 57666153 57666165 9.0E-06 TGACCAGATGTGT 13
NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 57669322 57669335 8.0E-06 TTGGAAAAGTCCCG 14
SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 57669793 57669807 1.0E-06 AATCAACAGGTTCTT 15
Foxd3_MA0041.1 JASPAR + 57669413 57669424 6.0E-06 GTATATTTGCTT 12
FOXI1_forkhead_full_dimeric_17_1 SELEX + 57669871 57669887 1.0E-06 CTGTTTACAGTCAATAC 17
FOXI1_forkhead_full_dimeric_17_1 SELEX - 57669871 57669887 3.0E-06 GTATTGACTGTAAACAG 17
IRF3_IRF_full_trimeric_21_1 SELEX - 57666199 57666219 9.0E-06 AGGGAAGGGAAAAGGGAAGGG 21
FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 57669412 57669424 6.0E-06 AAGCAAATATACA 13
V_DMRT4_01_M01149 TRANSFAC - 57669400 57669412 7.0E-06 AAAGTTTCAAAAA 13
V_HNF3B_01_M00131 TRANSFAC + 57669411 57669425 2.0E-06 TTGTATATTTGCTTT 15
V_EBF_Q6_M00977 TRANSFAC - 57669004 57669014 5.0E-06 TTCCCCAGGGA 11
V_TCFE2A_04_M02927 TRANSFAC - 57666166 57666182 0.0E+00 AAGACCAGATGTCTTGG 17
V_FOXO3_02_M02270 TRANSFAC - 57669872 57669879 7.0E-06 TGTAAACA 8
V_DMRT3_01_M01148 TRANSFAC + 57669400 57669414 8.0E-06 TTTTTGAAACTTTGT 15
V_FOXD3_01_M00130 TRANSFAC + 57669413 57669424 9.0E-06 GTATATTTGCTT 12
V_BCL6_01_M01183 TRANSFAC + 57669410 57669425 2.0E-06 TTTGTATATTTGCTTT 16
V_COE1_Q6_M01871 TRANSFAC + 57669004 57669017 1.0E-05 TCCCTGGGGAACCC 14
V_SP1_Q6_01_M00931 TRANSFAC + 57668655 57668664 4.0E-06 GGGGCGGGGC 10
V_EAR2_Q2_M01728 TRANSFAC + 57666117 57666130 7.0E-06 TCAGCTTTGCCTTT 14
V_P53_DECAMER_Q2_M00761 TRANSFAC + 57664549 57664558 9.0E-06 AGGCAAGTCT 10
V_HNF3_Q6_01_M01012 TRANSFAC + 57669411 57669428 0.0E+00 TTGTATATTTGCTTTGTG 18
V_GABPA_04_M02858 TRANSFAC + 57664600 57664615 6.0E-06 CCTGTTTCCCAATGAC 16
V_FOXJ1_03_M02750 TRANSFAC - 57669406 57669421 6.0E-06 CAAATATACAAAGTTT 16
V_PU1_Q4_M01172 TRANSFAC + 57666215 57666233 8.0E-06 TCCCTTCCCTTCCCTTTTC 19
V_P53_02_M00272 TRANSFAC - 57664549 57664558 9.0E-06 AGACTTGCCT 10
V_SOX7_03_M02807 TRANSFAC - 57666064 57666085 9.0E-06 AAATAGGAACAATATGGAAAGA 22
V_SOX1_04_M02906 TRANSFAC + 57673294 57673308 8.0E-06 TTATAATAGTTACTA 15
V_SP1_Q6_M00196 TRANSFAC + 57668653 57668665 7.0E-06 GCGGGGCGGGGCG 13
V_MAZ_Q6_01_M02023 TRANSFAC + 57668429 57668442 4.0E-06 GGCGGAGGGGAGGT 14
V_PBX1_01_M00096 TRANSFAC - 57669802 57669810 1.0E-05 ACCAATCAA 9
V_SP1SP3_Q4_M01219 TRANSFAC - 57668747 57668757 5.0E-06 CCGCCTCCTCC 11
V_BBX_04_M02843 TRANSFAC - 57669867 57669883 9.0E-06 TGACTGTAAACAGAGAG 17
V_XFD2_01_M00268 TRANSFAC - 57669868 57669881 5.0E-06 ACTGTAAACAGAGA 14
V_CTCF_02_M01259 TRANSFAC + 57669820 57669839 4.0E-06 CTTTAGACAGTAGATGGTGC 20
V_SP4_Q5_M01273 TRANSFAC - 57668654 57668664 2.0E-06 GCCCCGCCCCG 11
V_FXR_IR1_Q6_M00767 TRANSFAC + 57673276 57673288 8.0E-06 GGGCTAATAACCT 13
V_FOX_Q2_M00809 TRANSFAC + 57669413 57669425 3.0E-06 GTATATTTGCTTT 13
V_SREBP_Q3_M00776 TRANSFAC + 57664523 57664534 1.0E-06 GGGATCACCCTA 12
V_SOX21_04_M02907 TRANSFAC + 57666068 57666084 5.0E-06 TCCATATTGTTCCTATT 17
V_LXRA_RXRA_Q3_M00647 TRANSFAC - 57673278 57673292 2.0E-06 CATGAGGTTATTAGC 15
V_DMRT2_01_M01147 TRANSFAC + 57666070 57666085 2.0E-06 CATATTGTTCCTATTT 16
V_DMRT2_01_M01147 TRANSFAC + 57669399 57669414 6.0E-06 ATTTTTGAAACTTTGT 16
V_PBX_Q3_M00998 TRANSFAC + 57668560 57668571 5.0E-06 GATTGAAGGGAG 12
V_HFH3_01_M00289 TRANSFAC + 57669413 57669425 4.0E-06 GTATATTTGCTTT 13
V_FOXJ2_01_M00422 TRANSFAC - 57669411 57669428 1.0E-06 CACAAAGCAAATATACAA 18
V_SOX4_01_M01308 TRANSFAC - 57669854 57669861 1.0E-05 AACAAAGG 8
V_SOX2_Q6_M01272 TRANSFAC + 57669850 57669865 4.0E-06 GATCCCTTTGTTTCTA 16
V_SOX12_03_M02796 TRANSFAC + 57666071 57666084 1.0E-05 ATATTGTTCCTATT 14
V_RNF96_01_M01199 TRANSFAC - 57668549 57668558 7.0E-06 GCCCGCGGCC 10
V_DMRT1_01_M01146 TRANSFAC + 57669403 57669417 1.0E-06 TTGAAACTTTGTATA 15
V_SOX9_Q4_M01284 TRANSFAC - 57669852 57669862 0.0E+00 AAACAAAGGGA 11
V_DMRT5_01_M01150 TRANSFAC + 57669401 57669415 1.0E-06 TTTTGAAACTTTGTA 15
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL