Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZSCAN10 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 84891 zinc finger and SCAN domain containing 10 chr16 - 3142361 - 3147861 3142861 V_ZFP206_01_M01742 Transcription Factor Binding Sites   Download all TFBS in the ZSCAN10 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 3146031 3146049 0.0E+00 TAGCCACCAGGAGGCACTG 19 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 3144747 3144755 9.0E-06 GTCATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 3144747 3144756 2.0E-06 GTCATAAAAA 10 TBX1_TBX_DBD_dimeric_20_2 SELEX + 3144802 3144821 8.0E-06 CTCACAACTAAGTGGGTGAA 20 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 3144747 3144756 5.0E-06 GTCATAAAAA 10 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX + 3144746 3144757 3.0E-06 TGTCATAAAAAG 12 PROX1_PROX_DBD_dimeric_12_1 SELEX - 3138613 3138624 1.0E-06 TAAGACTCCTTA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 3146000 3146012 6.0E-06 AAAAAATAAAAAA 13 POU3F4_POU_DBD_monomeric_11_1 SELEX - 3143850 3143860 8.0E-06 TGCAAAAATTA 11 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX + 3144747 3144756 2.0E-06 GTCATAAAAA 10 HOXC11_homeodomain_full_monomeric_11_1 SELEX + 3144746 3144756 7.0E-06 TGTCATAAAAA 11 Pax4_MA0068.1 JASPAR + 3146000 3146029 1.0E-06 AAAAAATAAAAAATATAAAATAAGTCATCT 30 Pax4_MA0068.1 JASPAR + 3146007 3146036 1.0E-06 AAAAAATATAAAATAAGTCATCTATAGCCA 30 Pax4_MA0068.1 JASPAR + 3146008 3146037 1.0E-06 AAAAATATAAAATAAGTCATCTATAGCCAC 30 Klf4_MA0039.2 JASPAR - 3146147 3146156 5.0E-06 TGGGTGGGGC 10 NFKB2_NFAT_DBD_dimeric_13_1 SELEX + 3146085 3146097 3.0E-06 TGGGGCTTCCCCT 13 NFKB2_NFAT_DBD_dimeric_13_1 SELEX - 3146085 3146097 6.0E-06 AGGGGAAGCCCCA 13 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX + 3144747 3144756 0.0E+00 GTCATAAAAA 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 3144746 3144755 6.0E-06 TGTCATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 3144747 3144755 9.0E-06 GTCATAAAA 9 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 3146001 3146011 8.0E-06 AAAAATAAAAA 11 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 3144747 3144756 9.0E-06 GTCATAAAAA 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 3143848 3143857 9.0E-06 AAAAATTAGC 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 3144746 3144756 3.0E-06 TGTCATAAAAA 11 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX + 3144746 3144756 2.0E-06 TGTCATAAAAA 11 CTCF_C2H2_full_monomeric_17_1 SELEX - 3144762 3144778 9.0E-06 AGCGCCTCCTACAGGCA 17 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 3146001 3146011 4.0E-06 AAAAATAAAAA 11 NFKB1_NFAT_DBD_dimeric_13_1 SELEX + 3146085 3146097 9.0E-06 TGGGGCTTCCCCT 13 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 3146085 3146097 6.0E-06 AGGGGAAGCCCCA 13 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX + 3144747 3144756 1.0E-06 GTCATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX + 3144747 3144755 7.0E-06 GTCATAAAA 9 CPEB1_RRM_full_monomeric_8_1 SELEX + 3146004 3146011 4.0E-06 AATAAAAA 8 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 3144746 3144756 5.0E-06 TGTCATAAAAA 11 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 3145999 3146011 3.0E-06 CAAAAAATAAAAA 13 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 3144747 3144755 6.0E-06 GTCATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX + 3144747 3144755 6.0E-06 GTCATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 3144746 3144756 2.0E-06 TGTCATAAAAA 11 Zfx_MA0146.1 JASPAR + 3138560 3138573 5.0E-06 CCCGCCTCGGCCTC 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 3146001 3146014 3.0E-06 AAAAATAAAAAATA 14 V_HOXA9_01_M01351 TRANSFAC + 3144744 3144760 2.0E-06 AGTGTCATAAAAAGTAA 17 V_FOXP1_01_M00987 TRANSFAC - 3146000 3146019 5.0E-06 TTTTATATTTTTTATTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 3146002 3146021 0.0E+00 TATTTTATATTTTTTATTTT 20 V_OSR1_03_M02784 TRANSFAC + 3143806 3143821 3.0E-06 GTTTACAGTAGCTGGG 16 V_DBX1_01_M01483 TRANSFAC + 3145999 3146015 3.0E-06 CAAAAAATAAAAAATAT 17 V_DBX1_01_M01483 TRANSFAC + 3146006 3146022 2.0E-06 TAAAAAATATAAAATAA 17 V_GAF_Q6_M01209 TRANSFAC - 3144689 3144699 9.0E-06 CATATTCCCTG 11 V_POU3F3_01_M03090 TRANSFAC - 3143850 3143866 5.0E-06 TAAAAATGCAAAAATTA 17 V_POU3F3_01_M03090 TRANSFAC + 3143851 3143867 9.0E-06 AATTTTTGCATTTTTAG 17 V_HMGIY_Q3_M01010 TRANSFAC + 3144837 3144851 1.0E-06 CATTCATTTTTCTTA 15 V_HMGIY_Q3_M01010 TRANSFAC - 3145998 3146012 7.0E-06 TTTTTTATTTTTTGA 15 V_HMGIY_Q3_M01010 TRANSFAC - 3146006 3146020 2.0E-06 ATTTTATATTTTTTA 15 V_FOXD3_01_M00130 TRANSFAC - 3146003 3146014 9.0E-06 TATTTTTTATTT 12 V_BCL6_01_M01183 TRANSFAC - 3146000 3146015 7.0E-06 ATATTTTTTATTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 3146002 3146017 2.0E-06 TTATATTTTTTATTTT 16 V_BCL6_01_M01183 TRANSFAC - 3146007 3146022 1.0E-06 TTATTTTATATTTTTT 16 V_HOXA13_02_M01297 TRANSFAC + 3146003 3146011 4.0E-06 AAATAAAAA 9 V_LBX2_01_M01401 TRANSFAC - 3146179 3146195 3.0E-06 AGCCTCAATTAGTTGAG 17 V_LBX2_01_M01401 TRANSFAC + 3146180 3146196 9.0E-06 TCAACTAATTGAGGCTG 17 V_MAFB_03_M02879 TRANSFAC - 3143850 3143864 1.0E-06 AAAATGCAAAAATTA 15 V_MEF2_02_M00231 TRANSFAC + 3145992 3146013 4.0E-06 CCCGTCTCAAAAAATAAAAAAT 22 V_OCTAMER_01_M01324 TRANSFAC - 3143850 3143866 5.0E-06 TAAAAATGCAAAAATTA 17 V_OCTAMER_01_M01324 TRANSFAC + 3143851 3143867 9.0E-06 AATTTTTGCATTTTTAG 17 V_OCT1_01_M00135 TRANSFAC - 3143849 3143867 3.0E-06 CTAAAAATGCAAAAATTAG 19 V_FOXO3A_Q1_M01137 TRANSFAC + 3146000 3146011 7.0E-06 AAAAAATAAAAA 12 V_HNF3_Q6_01_M01012 TRANSFAC - 3146002 3146019 5.0E-06 TTTTATATTTTTTATTTT 18 V_MAF_Q6_M00648 TRANSFAC - 3146058 3146073 9.0E-06 TGGGAGGAGGTTGGGG 16 V_PITX2_Q6_M02114 TRANSFAC - 3143803 3143812 1.0E-06 TGTAAACCCA 10 V_PITX2_Q6_M02114 TRANSFAC - 3143818 3143827 1.0E-06 TGTAATCCCA 10 V_SOX21_03_M02803 TRANSFAC + 3146007 3146022 9.0E-06 AAAAAATATAAAATAA 16 V_SOX21_03_M02803 TRANSFAC - 3146007 3146022 7.0E-06 TTATTTTATATTTTTT 16 V_TCFAP2E_04_M02926 TRANSFAC + 3146001 3146014 6.0E-06 AAAAATAAAAAATA 14 V_CDX_Q5_M00991 TRANSFAC + 3146001 3146018 1.0E-06 AAAAATAAAAAATATAAA 18 V_CDX_Q5_M00991 TRANSFAC + 3146013 3146030 7.0E-06 TATAAAATAAGTCATCTA 18 V_HOXC13_01_M01317 TRANSFAC + 3144743 3144758 9.0E-06 CAGTGTCATAAAAAGT 16 V_AP1_Q6_M00174 TRANSFAC - 3146018 3146028 1.0E-05 GATGACTTATT 11 V_LHX61_01_M01314 TRANSFAC - 3146180 3146196 8.0E-06 CAGCCTCAATTAGTTGA 17 V_ELF4_04_M02850 TRANSFAC + 3145995 3146011 9.0E-06 GTCTCAAAAAATAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 3145996 3146012 0.0E+00 TCTCAAAAAATAAAAAA 17 V_FOXA2_02_M02853 TRANSFAC + 3146001 3146015 2.0E-06 AAAAATAAAAAATAT 15 V_POU3F2_01_M00463 TRANSFAC - 3146014 3146027 2.0E-06 ATGACTTATTTTAT 14 V_ZFP105_03_M02827 TRANSFAC + 3145997 3146011 3.0E-06 CTCAAAAAATAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 3146000 3146014 0.0E+00 AAAAAATAAAAAATA 15 V_ZFP105_03_M02827 TRANSFAC + 3146001 3146015 1.0E-06 AAAAATAAAAAATAT 15 V_ZFP105_03_M02827 TRANSFAC + 3146004 3146018 1.0E-06 AATAAAAAATATAAA 15 V_ARX_01_M01423 TRANSFAC + 3146179 3146195 7.0E-06 CTCAACTAATTGAGGCT 17 V_ZBP89_Q4_M01816 TRANSFAC + 3146053 3146062 2.0E-06 TCCTCCCCCA 10 V_HOXD12_01_M01380 TRANSFAC + 3144743 3144759 7.0E-06 CAGTGTCATAAAAAGTA 17 V_ARID3A_02_M02839 TRANSFAC + 3146008 3146022 3.0E-06 AAAAATATAAAATAA 15 V_FOXK1_04_M02856 TRANSFAC + 3145999 3146013 7.0E-06 CAAAAAATAAAAAAT 15 V_CDX2_01_M01449 TRANSFAC + 3144743 3144758 8.0E-06 CAGTGTCATAAAAAGT 16 V_HNF3_Q6_M00791 TRANSFAC + 3146001 3146013 6.0E-06 AAAAATAAAAAAT 13 V_LHX2_01_M01325 TRANSFAC + 3146180 3146196 5.0E-06 TCAACTAATTGAGGCTG 17 V_HOXC11_01_M01329 TRANSFAC + 3144743 3144758 2.0E-06 CAGTGTCATAAAAAGT 16 V_HNF1_Q6_01_M01011 TRANSFAC + 3146003 3146023 8.0E-06 AAATAAAAAATATAAAATAAG 21 V_HOXD11_01_M01434 TRANSFAC + 3144743 3144759 4.0E-06 CAGTGTCATAAAAAGTA 17 V_CDX1_01_M01373 TRANSFAC + 3144743 3144758 9.0E-06 CAGTGTCATAAAAAGT 16 V_OCT1_04_M00138 TRANSFAC - 3143847 3143869 3.0E-06 TACTAAAAATGCAAAAATTAGCT 23 V_OCT1_04_M00138 TRANSFAC + 3146004 3146026 5.0E-06 AATAAAAAATATAAAATAAGTCA 23 V_RAX_01_M01389 TRANSFAC - 3146179 3146195 4.0E-06 AGCCTCAATTAGTTGAG 17 V_HOXC12_01_M01437 TRANSFAC + 3144743 3144759 7.0E-06 CAGTGTCATAAAAAGTA 17 V_MEF2_04_M00233 TRANSFAC + 3145992 3146013 3.0E-06 CCCGTCTCAAAAAATAAAAAAT 22 V_NCX_02_M01420 TRANSFAC + 3145999 3146015 4.0E-06 CAAAAAATAAAAAATAT 17 V_HOXA11_01_M01378 TRANSFAC + 3144743 3144758 2.0E-06 CAGTGTCATAAAAAGT 16 V_TBP_06_M02814 TRANSFAC - 3146000 3146015 5.0E-06 ATATTTTTTATTTTTT 16 V_TBP_06_M02814 TRANSFAC + 3146007 3146022 4.0E-06 AAAAAATATAAAATAA 16 V_TBP_06_M02814 TRANSFAC - 3146007 3146022 1.0E-06 TTATTTTATATTTTTT 16 V_TBP_06_M02814 TRANSFAC - 3146009 3146024 5.0E-06 ACTTATTTTATATTTT 16 V_CTCF_02_M01259 TRANSFAC + 3146028 3146047 1.0E-06 CTATAGCCACCAGGAGGCAC 20 V_CTCF_01_M01200 TRANSFAC + 3146030 3146049 0.0E+00 ATAGCCACCAGGAGGCACTG 20 V_ARX_02_M02945 TRANSFAC + 3146179 3146195 7.0E-06 CTCAACTAATTGAGGCT 17 V_EN2_01_M01455 TRANSFAC - 3146179 3146195 2.0E-06 AGCCTCAATTAGTTGAG 17 V_CIZ_01_M00734 TRANSFAC + 3145999 3146007 6.0E-06 CAAAAAATA 9 V_MTF1_06_M02882 TRANSFAC - 3144841 3144854 6.0E-06 CTTTAAGAAAAATG 14 V_MTF1_06_M02882 TRANSFAC + 3146001 3146014 2.0E-06 AAAAATAAAAAATA 14 V_MTF1_06_M02882 TRANSFAC + 3146003 3146016 0.0E+00 AAATAAAAAATATA 14 V_MTF1_06_M02882 TRANSFAC + 3146010 3146023 0.0E+00 AAATATAAAATAAG 14 V_POU5F1_01_M01307 TRANSFAC - 3143853 3143862 0.0E+00 AATGCAAAAA 10 V_FAC1_01_M00456 TRANSFAC + 3146001 3146014 7.0E-06 AAAAATAAAAAATA 14 V_OSR2_03_M02785 TRANSFAC + 3143806 3143821 6.0E-06 GTTTACAGTAGCTGGG 16 V_P53_05_M01655 TRANSFAC - 3144700 3144719 8.0E-06 AGAGATGGTCTGACTTGTTC 20 V_PITX2_Q2_M00482 TRANSFAC - 3143817 3143827 1.0E-06 TGTAATCCCAG 11 V_SRF_06_M02916 TRANSFAC + 3145997 3146013 4.0E-06 CTCAAAAAATAAAAAAT 17 V_SRF_06_M02916 TRANSFAC + 3145998 3146014 7.0E-06 TCAAAAAATAAAAAATA 17 V_SRF_06_M02916 TRANSFAC + 3145999 3146015 1.0E-06 CAAAAAATAAAAAATAT 17 V_SRF_06_M02916 TRANSFAC + 3146001 3146017 1.0E-05 AAAAATAAAAAATATAA 17 V_NKX11_01_M01334 TRANSFAC - 3146179 3146195 1.0E-05 AGCCTCAATTAGTTGAG 17 V_ALX3_01_M01355 TRANSFAC - 3146179 3146195 9.0E-06 AGCCTCAATTAGTTGAG 17 V_NKX12_01_M01427 TRANSFAC + 3146179 3146195 9.0E-06 CTCAACTAATTGAGGCT 17 V_HOXC10_01_M01361 TRANSFAC + 3144743 3144758 1.0E-06 CAGTGTCATAAAAAGT 16 V_HOXA10_01_M01464 TRANSFAC + 3144744 3144759 3.0E-06 AGTGTCATAAAAAGTA 16 V_MAFK_04_M02880 TRANSFAC - 3143854 3143868 7.0E-06 ACTAAAAATGCAAAA 15 V_HOXD10_01_M01375 TRANSFAC + 3144744 3144760 1.0E-06 AGTGTCATAAAAAGTAA 17 V_ALX3_02_M02943 TRANSFAC - 3146179 3146195 9.0E-06 AGCCTCAATTAGTTGAG 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.