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RPUSD4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84881 RNA pseudouridylate synthase domain containing 4 chr11 - 126081087 - 126086587 126081587 Transcription Factor Binding Sites   Download all TFBS in the RPUSD4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 126084531 126084548 7.0E-06 TGTCTAAATGTTTTCTTA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 126084531 126084548 6.0E-06 TAAGAAAACATTTAGACA 18 MYBL2_MYB_DBD_dimeric_15_1 SELEX + 126081774 126081788 1.0E-06 AACGGTTTAACGTTT 15 MYBL2_MYB_DBD_dimeric_15_1 SELEX - 126081774 126081788 0.0E+00 AAACGTTAAACCGTT 15 SOX10_HMG_full_dimeric_14_1 SELEX + 126084974 126084987 9.0E-06 GGAAAGTACAGTCA 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 126084537 126084548 5.0E-06 TAAGAAAACATT 12 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 126084538 126084548 6.0E-06 TAAGAAAACAT 11 SOX8_HMG_DBD_dimeric_14_1 SELEX + 126084974 126084987 3.0E-06 GGAAAGTACAGTCA 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 126084533 126084546 3.0E-06 AGAAAACATTTAGA 14 USF1_bHLH_DBD_dimeric_10_1 SELEX - 126081614 126081623 8.0E-06 ACCACGTGAC 10 REL_MA0101.1 JASPAR + 126081799 126081808 6.0E-06 CGGGATTTCC 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 126084915 126084924 8.0E-06 AACCATAAAA 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 126084533 126084546 9.0E-06 TCTAAATGTTTTCT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 126084533 126084546 3.0E-06 AGAAAACATTTAGA 14 RELA_MA0107.1 JASPAR + 126081799 126081808 8.0E-06 CGGGATTTCC 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 126084914 126084924 8.0E-06 AACCATAAAAC 11 SP1_MA0079.2 JASPAR + 126081876 126081885 7.0E-06 CCCCGCCCCC 10 SRY_MA0084.1 JASPAR - 126084911 126084919 7.0E-06 TAAAACAAT 9 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 126084533 126084546 9.0E-06 AGAAAACATTTAGA 14 TFEB_bHLH_full_dimeric_10_1 SELEX - 126081614 126081623 4.0E-06 ACCACGTGAC 10 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 126084929 126084940 5.0E-06 AGAGATTAAAGG 12 YY2_C2H2_full_monomeric_11_1 SELEX + 126081526 126081536 4.0E-06 GCCGCCATCTT 11 Foxd3_MA0041.1 JASPAR + 126084536 126084547 3.0E-06 AAATGTTTTCTT 12 Foxd3_MA0041.1 JASPAR - 126085038 126085049 3.0E-06 AATTATTTGTTC 12 MYBL1_MYB_DBD_dimeric_12_1 SELEX - 126081776 126081787 1.0E-06 AACGTTAAACCG 12 Myf_MA0055.1 JASPAR - 126080888 126080899 5.0E-06 CGGCAGCTGCAG 12 ELF5_ETS_full_monomeric_11_1 SELEX + 126084893 126084903 6.0E-06 AGCAGGAAGTA 11 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 126081614 126081623 3.0E-06 ACCACGTGAC 10 MYBL1_MYB_DBD_monomeric_11_1 SELEX - 126081772 126081782 6.0E-06 TAAACCGTTGA 11 V_NFKAPPAB65_01_M00052 TRANSFAC + 126081799 126081808 9.0E-06 CGGGATTTCC 10 V_OSR1_03_M02784 TRANSFAC + 126081143 126081158 2.0E-06 CCTGACAGTAGCCAAA 16 V_HNF3B_01_M00131 TRANSFAC + 126084534 126084548 1.0E-06 CTAAATGTTTTCTTA 15 V_HNF3B_01_M00131 TRANSFAC - 126085037 126085051 5.0E-06 CAAATTATTTGTTCA 15 V_STAT5A_Q6_M01890 TRANSFAC + 126084539 126084551 1.0E-06 TGTTTTCTTAGAA 13 V_USF_Q6_M00187 TRANSFAC + 126081614 126081623 5.0E-06 GTCACGTGGT 10 V_CDX2_Q5_01_M01659 TRANSFAC - 126081406 126081416 1.0E-05 GCCATAAATGC 11 V_APOLYA_B_M00310 TRANSFAC + 126084865 126084879 7.0E-06 ATTAACCAGCGATTC 15 V_OBOX1_01_M01450 TRANSFAC + 126084925 126084941 9.0E-06 TTAGAGAGATTAAAGGA 17 V_ZFX_01_M01593 TRANSFAC - 126081626 126081641 3.0E-06 GCCCAGGCCCCACCCC 16 V_FOXD3_01_M00130 TRANSFAC + 126084536 126084547 3.0E-06 AAATGTTTTCTT 12 V_FOXD3_01_M00130 TRANSFAC - 126085038 126085049 1.0E-06 AATTATTTGTTC 12 V_DEAF1_02_M01002 TRANSFAC - 126081165 126081189 6.0E-06 AAGGGTACGGTGTTTTCCCGTGAGC 25 V_ETS_B_M00340 TRANSFAC + 126084893 126084906 0.0E+00 AGCAGGAAGTACTT 14 V_EBOX_Q6_01_M01034 TRANSFAC - 126081613 126081622 2.0E-06 CCACGTGACC 10 V_EBOX_Q6_01_M01034 TRANSFAC - 126081643 126081652 4.0E-06 CCACGTGACT 10 V_HNF3_Q6_01_M01012 TRANSFAC - 126085034 126085051 2.0E-06 CAAATTATTTGTTCAAGT 18 V_STAT5B_01_M00459 TRANSFAC + 126084540 126084554 8.0E-06 GTTTTCTTAGAACAA 15 V_SP1_03_M02281 TRANSFAC + 126081876 126081885 7.0E-06 CCCCGCCCCC 10 V_GKLF_02_M01588 TRANSFAC - 126081542 126081553 5.0E-06 GCCCCGCCCTTC 12 V_SP1_02_M01303 TRANSFAC - 126081874 126081884 3.0E-06 GGGGCGGGGAG 11 V_COUPTF_Q6_M01036 TRANSFAC + 126081187 126081209 1.0E-06 CTTACTGACCCCTCCCCTCCGCC 23 V_TCFAP2E_04_M02926 TRANSFAC + 126085033 126085046 2.0E-06 TACTTGAACAAATA 14 V_NFY_C_M00209 TRANSFAC + 126084846 126084859 8.0E-06 TGTGATTTGCTAGT 14 V_ETS_Q4_M00771 TRANSFAC - 126084895 126084906 2.0E-06 AAGTACTTCCTG 12 V_ELF4_04_M02850 TRANSFAC - 126084536 126084552 7.0E-06 GTTCTAAGAAAACATTT 17 V_SOX13_03_M02797 TRANSFAC + 126085034 126085049 1.0E-05 ACTTGAACAAATAATT 16 V_MYF_01_M01302 TRANSFAC - 126080888 126080899 5.0E-06 CGGCAGCTGCAG 12 V_GFI1_01_M00250 TRANSFAC - 126084837 126084860 1.0E-06 AACTAGCAAATCACAGTTTGAGGA 24 V_CREL_01_M00053 TRANSFAC + 126081799 126081808 6.0E-06 CGGGATTTCC 10 V_KROX_Q6_M00982 TRANSFAC + 126081877 126081890 1.0E-06 CCCGCCCCCGCGCC 14 V_HOXB9_01_M01426 TRANSFAC - 126084911 126084926 2.0E-06 AAAACCATAAAACAAT 16 V_FOXK1_04_M02856 TRANSFAC - 126084912 126084926 8.0E-06 AAAACCATAAAACAA 15 V_IRF3_Q3_M01279 TRANSFAC + 126082074 126082086 4.0E-06 TTTGTTTCGCGTT 13 MYC_MAX_MA0059.1 JASPAR + 126081561 126081571 5.0E-06 GACCACGTGGA 11 V_MAZ_Q6_01_M02023 TRANSFAC - 126081196 126081209 0.0E+00 GGCGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 126081872 126081885 3.0E-06 GGGGGCGGGGAGGA 14 V_HNF3_Q6_M00791 TRANSFAC + 126085036 126085048 2.0E-06 TTGAACAAATAAT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 126085036 126085046 4.0E-06 TATTTGTTCAA 11 V_EGR1_Q6_M01873 TRANSFAC - 126081878 126081887 4.0E-06 GCGGGGGCGG 10 V_CDX2_Q5_M00729 TRANSFAC + 126084911 126084924 3.0E-06 ATTGTTTTATGGTT 14 V_SOX_Q6_M01014 TRANSFAC + 126082071 126082083 1.0E-06 CTCTTTGTTTCGC 13 V_OBOX2_01_M01364 TRANSFAC + 126084925 126084941 9.0E-06 TTAGAGAGATTAAAGGA 17 V_YY1_Q6_02_M01035 TRANSFAC + 126081526 126081536 7.0E-06 GCCGCCATCTT 11 V_PAX6_Q2_M00979 TRANSFAC - 126085011 126085024 1.0E-05 CTGAACTGGAACTA 14 V_REX1_03_M01744 TRANSFAC - 126081525 126081536 1.0E-06 AAGATGGCGGCG 12 V_USF_01_M00121 TRANSFAC + 126081612 126081625 5.0E-06 AGGTCACGTGGTGC 14 V_USF_01_M00121 TRANSFAC - 126081612 126081625 5.0E-06 GCACCACGTGACCT 14 V_SOX12_04_M02900 TRANSFAC - 126081350 126081365 7.0E-06 CAAGACACAAAGAAGG 16 V_STAT4_Q5_M02117 TRANSFAC - 126084542 126084551 1.0E-06 TTCTAAGAAA 10 V_STAT4_Q5_M02117 TRANSFAC - 126084882 126084891 5.0E-06 TTCAAGGAAA 10 V_KAISO_01_M01119 TRANSFAC - 126084947 126084956 1.0E-06 TTCCTGCTAA 10 V_HOXD9_Q2_M01834 TRANSFAC - 126084915 126084924 4.0E-06 AACCATAAAA 10 V_SP4_Q5_M01273 TRANSFAC + 126081875 126081885 9.0E-06 TCCCCGCCCCC 11 V_OTX2_Q3_M01719 TRANSFAC + 126084927 126084939 5.0E-06 AGAGAGATTAAAG 13 V_USF_Q6_01_M00796 TRANSFAC - 126081613 126081624 1.0E-06 CACCACGTGACC 12 V_SOX15_03_M02799 TRANSFAC + 126085034 126085050 1.0E-06 ACTTGAACAAATAATTT 17 V_ALPHACP1_01_M00687 TRANSFAC + 126081295 126081305 2.0E-06 AAACCAATGAG 11 V_MAZR_01_M00491 TRANSFAC - 126081192 126081204 7.0E-06 AGGGGAGGGGTCA 13 V_NFYC_Q5_M02107 TRANSFAC + 126081295 126081308 3.0E-06 AAACCAATGAGCGC 14 V_EHF_06_M02745 TRANSFAC + 126084890 126084904 8.0E-06 AAGAGCAGGAAGTAC 15 V_OBOX2_02_M03064 TRANSFAC + 126084925 126084941 9.0E-06 TTAGAGAGATTAAAGGA 17 V_PITX1_01_M01484 TRANSFAC + 126084925 126084941 5.0E-06 TTAGAGAGATTAAAGGA 17 V_PARP_Q3_M01211 TRANSFAC - 126080911 126080920 8.0E-06 CAAGAAATAG 10 V_AIRE_01_M00999 TRANSFAC - 126084864 126084889 8.0E-06 CAAGGAAATGGAATCGCTGGTTAATC 26 V_NFY_01_M00287 TRANSFAC + 126081293 126081308 7.0E-06 GGAAACCAATGAGCGC 16 V_ETS1_B_M00339 TRANSFAC + 126084894 126084908 0.0E+00 GCAGGAAGTACTTGG 15 V_EGR1_06_M02744 TRANSFAC + 126081877 126081890 9.0E-06 CCCGCCCCCGCGCC 14 V_SRF_06_M02916 TRANSFAC - 126084536 126084552 4.0E-06 GTTCTAAGAAAACATTT 17 V_SOX2_Q6_M01272 TRANSFAC + 126082068 126082083 7.0E-06 AGCCTCTTTGTTTCGC 16 V_SP1_Q2_01_M00933 TRANSFAC + 126081876 126081885 4.0E-06 CCCCGCCCCC 10 V_NFYA_Q5_M02106 TRANSFAC + 126081295 126081308 9.0E-06 AAACCAATGAGCGC 14 V_STAT1_05_M01260 TRANSFAC - 126084873 126084894 5.0E-06 CTCTTCAAGGAAATGGAATCGC 22 V_AR_Q2_M00447 TRANSFAC + 126084891 126084905 2.0E-06 AGAGCAGGAAGTACT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.