Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

USMG5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84833 up-regulated during skeletal muscle growth 5 homolog (mouse) chr10 - 105155770 - 105161270 105156270 Transcription Factor Binding Sites   Download all TFBS in the USMG5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints E2F4_E2F_DBD_dimeric_12_2 SELEX + 105156298 105156309 9.0E-06 TATGGCTCCAAA 12 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 105154172 105154183 8.0E-06 TGACAGATATCT 12 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 105154003 105154013 3.0E-06 TCAAAAGGTCA 11 HSF1_HSF_full_trimeric_13_1 SELEX + 105154295 105154307 6.0E-06 TTCAAGAAGGTTC 13 RFX4_RFX_DBD_dimeric_16_1 SELEX + 105154190 105154205 2.0E-06 CATTACTATGGAAACT 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 105154190 105154205 5.0E-06 AGTTTCCATAGTAATG 16 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 105155861 105155872 2.0E-06 TATTACGTCACT 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 105155861 105155872 1.0E-05 AGTGACGTAATA 12 Pax4_MA0068.1 JASPAR - 105156956 105156985 7.0E-06 AAAAAAAAAAAAAAAAAGGATTCAAATGCA 30 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 105154273 105154288 8.0E-06 AAAATGACCTTAATTT 16 JDP2_bZIP_full_dimeric_12_1 SELEX + 105155861 105155872 5.0E-06 TATTACGTCACT 12 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX + 105155865 105155881 5.0E-06 ACGTCACTGGGTGACCT 17 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX - 105155865 105155881 6.0E-06 AGGTCACCCAGTGACGT 17 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 105154190 105154205 9.0E-06 CATTACTATGGAAACT 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 105154190 105154205 1.0E-06 AGTTTCCATAGTAATG 16 RUNX2_RUNX_DBD_dimeric_18_1 SELEX + 105156172 105156189 5.0E-06 AAGCCGCAAATTCCGCAG 18 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX - 105153044 105153060 2.0E-06 GGCTGGTTTTACCAGTT 17 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 105157199 105157208 9.0E-06 AAAAATTAAA 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 105157353 105157362 9.0E-06 AAAAATTAGC 10 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 105155860 105155873 5.0E-06 ATATTACGTCACTG 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 105155860 105155873 4.0E-06 CAGTGACGTAATAT 14 NFIX_NFI_full_monomeric_9_2 SELEX - 105154252 105154260 8.0E-06 ATTGCCAAT 9 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 105155861 105155872 7.0E-06 TATTACGTCACT 12 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 105156401 105156416 7.0E-06 TACCCACAGTCCAGTG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 105154190 105154205 2.0E-06 CATTACTATGGAAACT 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 105154190 105154205 2.0E-06 AGTTTCCATAGTAATG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 105154190 105154205 3.0E-06 CATTACTATGGAAACT 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 105154190 105154205 3.0E-06 AGTTTCCATAGTAATG 16 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 105154249 105154263 9.0E-06 AGAATTGGCAATGAA 15 IRF9_IRF_full_trimeric_15_1 SELEX + 105154197 105154211 5.0E-06 ATGGAAACTGGAACT 15 Rhox11_homeodomain_DBD_monomeric_9_1 SELEX - 105155664 105155672 1.0E-05 CGCTGTAAA 9 RORA_1_MA0071.1 JASPAR - 105154277 105154286 6.0E-06 ATTAAGGTCA 10 RORA_2_MA0072.1 JASPAR + 105156328 105156341 8.0E-06 TGTCTCTAGGTCAC 14 RUNX3_RUNX_DBD_dimeric_18_1 SELEX + 105156172 105156189 4.0E-06 AAGCCGCAAATTCCGCAG 18 V_KLF15_Q2_M01714 TRANSFAC - 105154207 105154220 8.0E-06 GAATGGGGGAGTTC 14 V_NFY_Q6_M00185 TRANSFAC - 105156289 105156299 1.0E-05 TAGCCAATCGT 11 V_HMGIY_Q3_M01010 TRANSFAC + 105157197 105157211 5.0E-06 CCTTTAATTTTTTTG 15 V_HMGIY_Q3_M01010 TRANSFAC + 105157198 105157212 4.0E-06 CTTTAATTTTTTTGA 15 V_RORA1_01_M00156 TRANSFAC - 105154276 105154288 0.0E+00 AAATTAAGGTCAT 13 V_BCL6_01_M01183 TRANSFAC + 105157194 105157209 8.0E-06 TCTCCTTTAATTTTTT 16 V_CREB_Q4_M00178 TRANSFAC - 105155861 105155872 8.0E-06 AGTGACGTAATA 12 V_SPIB_02_M02041 TRANSFAC + 105156356 105156365 7.0E-06 AACGGAAGTA 10 V_ETV3_01_M01990 TRANSFAC + 105156356 105156365 6.0E-06 AACGGAAGTA 10 V_CREB_Q4_01_M00917 TRANSFAC - 105155863 105155873 6.0E-06 CAGTGACGTAA 11 V_OCT1_Q5_01_M00930 TRANSFAC - 105154258 105154268 6.0E-06 AAATTTTCATT 11 V_ZTA_Q2_M00711 TRANSFAC + 105154132 105154144 5.0E-06 TGACAGTGACTCA 13 V_NR2F2_03_M02783 TRANSFAC + 105154002 105154017 1.0E-06 TTCAAAAGGTCACCAG 16 V_CREB_01_M00039 TRANSFAC - 105155863 105155870 1.0E-05 TGACGTAA 8 V_JUNDM2_03_M02772 TRANSFAC - 105155859 105155874 8.0E-06 CCAGTGACGTAATATT 16 V_HEN1_01_M00068 TRANSFAC - 105154135 105154156 5.0E-06 TCAAGACCCAGCTGAGTCACTG 22 V_AP4_Q6_01_M00927 TRANSFAC - 105156186 105156194 6.0E-06 ACCAGCTGC 9 V_TCFAP2E_04_M02926 TRANSFAC - 105157202 105157215 1.0E-05 GTCTCAAAAAAATT 14 V_PAX_Q6_M00808 TRANSFAC + 105154204 105154214 5.0E-06 CTGGAACTCCC 11 V_HMGA2_01_M01300 TRANSFAC + 105154273 105154287 9.0E-06 AAAATGACCTTAATT 15 V_SPIC_01_M02042 TRANSFAC + 105156356 105156365 3.0E-06 AACGGAAGTA 10 V_HNF3G_Q4_M02015 TRANSFAC - 105155781 105155788 7.0E-06 TGTTTGTT 8 V_PET1_02_M02072 TRANSFAC + 105156356 105156365 7.0E-06 AACGGAAGTA 10 V_POLY_C_M00212 TRANSFAC - 105155804 105155821 7.0E-06 GAATTAACCTCTTTTCTT 18 V_NKX61_01_M00424 TRANSFAC + 105157197 105157209 7.0E-06 CCTTTAATTTTTT 13 V_ERF_01_M01984 TRANSFAC + 105156356 105156365 9.0E-06 AACGGAAGTA 10 V_KROX_Q6_M00982 TRANSFAC + 105156376 105156389 6.0E-06 CCCGCCCACACTTC 14 V_AMEF2_Q6_M00403 TRANSFAC - 105157200 105157217 8.0E-06 CTGTCTCAAAAAAATTAA 18 V_AP1_Q4_M00188 TRANSFAC + 105154136 105154146 8.0E-06 AGTGACTCAGC 11 V_IRC900814_04_M02870 TRANSFAC + 105154026 105154041 8.0E-06 CTGAAAATTCGTATGC 16 V_TTF1_Q6_M00794 TRANSFAC - 105154842 105154853 4.0E-06 CTCTCAAGAGTC 12 V_PAX5_01_M00143 TRANSFAC + 105154228 105154255 4.0E-06 TTCAGAGGCATTCTTGTGTAAAGAATTG 28 V_MATH1_Q2_M01716 TRANSFAC + 105156186 105156195 3.0E-06 GCAGCTGGTG 10 V_TATA_C_M00216 TRANSFAC - 105153983 105153992 0.0E+00 TCTATAAAAG 10 V_RFXDC2_03_M02790 TRANSFAC + 105156347 105156361 1.0E-05 CAACACAGCAACGGA 15 V_CREBATF_Q6_M00981 TRANSFAC - 105155863 105155871 3.0E-06 GTGACGTAA 9 V_OCT1_04_M00138 TRANSFAC + 105154251 105154273 5.0E-06 AATTGGCAATGAAAATTTGAGAA 23 V_PET1_01_M02037 TRANSFAC + 105156356 105156365 7.0E-06 AACGGAAGTA 10 V_DAX1_01_M01248 TRANSFAC - 105154271 105154290 3.0E-06 GAAAATTAAGGTCATTTTTC 20 V_ERALPHA_01_M01801 TRANSFAC - 105157262 105157276 2.0E-06 AGGTTGCAGTGAGCT 15 V_MAFK_Q3_M02022 TRANSFAC + 105154138 105154148 6.0E-06 TGACTCAGCTG 11 V_GATA5_04_M02860 TRANSFAC + 105154167 105154183 2.0E-06 GAGGGAGATATCTGTCA 17 V_SMAD4_Q6_M00733 TRANSFAC + 105156580 105156594 7.0E-06 GTGGTTCGGCCACCT 15 V_STAF_02_M00264 TRANSFAC - 105156398 105156418 9.0E-06 GATACCCACAGTCCAGTGCAA 21 V_AP1_01_M00517 TRANSFAC + 105154135 105154147 8.0E-06 CAGTGACTCAGCT 13 V_BLIMP1_Q6_M01066 TRANSFAC - 105155698 105155713 7.0E-06 AAGCGAGTGAATGTGG 16 V_CAAT_01_M00254 TRANSFAC - 105156290 105156301 8.0E-06 CATAGCCAATCG 12 V_AP4_01_M00005 TRANSFAC + 105155782 105155799 9.0E-06 ACAAACAGCTATGGACAT 18 V_ZBTB3_03_M02825 TRANSFAC + 105156396 105156412 5.0E-06 AATTGCACTGGACTGTG 17 V_HEN1_02_M00058 TRANSFAC + 105154135 105154156 6.0E-06 CAGTGACTCAGCTGGGTCTTGA 22 V_ATF1_03_M02738 TRANSFAC + 105155859 105155874 4.0E-06 AATATTACGTCACTGG 16 V_ERR1_Q2_M00511 TRANSFAC - 105154275 105154288 7.0E-06 AAATTAAGGTCATT 14 V_ATF2_Q5_M01862 TRANSFAC - 105155862 105155873 3.0E-06 CAGTGACGTAAT 12 V_TFIIA_Q6_M00707 TRANSFAC + 105154828 105154839 8.0E-06 TCTTAAAGGAGG 12 V_NRF2_Q4_M00821 TRANSFAC - 105154136 105154148 6.0E-06 CAGCTGAGTCACT 13 V_TCF4_Q5_M00671 TRANSFAC - 105154218 105154225 1.0E-05 CCTTTGAA 8 V_PLZF_02_M01075 TRANSFAC + 105156950 105156978 1.0E-05 CTGTACTGCATTTGAATCCTTTTTTTTTT 29 V_RARA_03_M02787 TRANSFAC + 105154002 105154017 0.0E+00 TTCAAAAGGTCACCAG 16 V_HSF2_02_M01244 TRANSFAC + 105154261 105154273 5.0E-06 GAAAATTTGAGAA 13 V_HSF2_02_M01244 TRANSFAC - 105154295 105154307 3.0E-06 GAACCTTCTTGAA 13 V_EFC_Q6_M00626 TRANSFAC + 105154190 105154203 0.0E+00 CATTACTATGGAAA 14 V_NFE2_01_M00037 TRANSFAC - 105154137 105154147 2.0E-06 AGCTGAGTCAC 11 V_PAX4_02_M00377 TRANSFAC - 105157199 105157209 5.0E-06 AAAAAATTAAA 11 V_MAFK_04_M02880 TRANSFAC + 105156391 105156405 7.0E-06 GGAAGAATTGCACTG 15 V_PAX4_04_M00380 TRANSFAC - 105156958 105156987 6.0E-06 AAAAAAAAAAAAAAAAAAAGGATTCAAATG 30 V_SMAD1_01_M01590 TRANSFAC + 105155801 105155812 5.0E-06 CAGAAGAAAAGA 12 V_SPI1_02_M02043 TRANSFAC + 105156356 105156365 6.0E-06 AACGGAAGTA 10 V_ETV3_02_M02068 TRANSFAC + 105156356 105156365 5.0E-06 AACGGAAGTA 10 V_NANOG_02_M01247 TRANSFAC + 105155797 105155816 8.0E-06 CATACAGAAGAAAAGAGGTT 20 V_OCT4_01_M01125 TRANSFAC + 105154236 105154250 9.0E-06 CATTCTTGTGTAAAG 15 V_HSF1_Q6_01_M02017 TRANSFAC - 105154294 105154307 1.0E-06 GAACCTTCTTGAAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.