Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MFSD9 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84804 major facilitator superfamily domain containing 9 chr2 - 103352837 - 103358337 103353337 Transcription Factor Binding Sites   Download all TFBS in the MFSD9 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBR1_TBX_DBD_monomeric_10_1 SELEX - 103352810 103352819 2.0E-06 AGGTGTTAAA 10 YY1_C2H2_full_monomeric_11_1 SELEX + 103352340 103352350 4.0E-06 ACCGCCATTGT 11 TBX20_TBX_DBD_dimeric_19_1 SELEX + 103352259 103352277 5.0E-06 ACGTGGGAAATTAGCACTC 19 TBX1_TBX_DBD_dimeric_19_1 SELEX + 103352259 103352277 3.0E-06 ACGTGGGAAATTAGCACTC 19 TBX1_TBX_DBD_dimeric_19_1 SELEX - 103352259 103352277 5.0E-06 GAGTGCTAATTTCCCACGT 19 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 103353368 103353383 9.0E-06 ACCCGCCCCCTCTCTC 16 T_MA0009.1 JASPAR - 103352811 103352821 9.0E-06 CCAGGTGTTAA 11 RUNX2_RUNX_DBD_dimeric_16_1 SELEX - 103353202 103353217 1.0E-05 AGACCGCAGAGCGGAA 16 CEBPB_bZIP_full_dimeric_10_1 SELEX + 103352346 103352355 1.0E-05 ATTGTGCAAT 10 CEBPB_bZIP_full_dimeric_10_1 SELEX - 103352346 103352355 9.0E-06 ATTGCACAAT 10 FIGLA_bHLH_DBD_dimeric_10_1 SELEX + 103352813 103352822 4.0E-06 AACACCTGGT 10 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 103352322 103352336 7.0E-06 CACACACGATGAAAC 15 TBX15_TBX_DBD_dimeric_19_1 SELEX + 103352259 103352277 4.0E-06 ACGTGGGAAATTAGCACTC 19 TBX2_TBX_full_monomeric_11_1 SELEX - 103352810 103352820 5.0E-06 CAGGTGTTAAA 11 TBX20_TBX_DBD_monomeric_15_1 SELEX - 103352809 103352823 3.0E-06 GACCAGGTGTTAAAT 15 RUNX1_MA0002.2 JASPAR - 103352510 103352520 2.0E-06 GCCTGTGGTTT 11 CEBPE_bZIP_DBD_dimeric_10_1 SELEX - 103352346 103352355 7.0E-06 ATTGCACAAT 10 Sox2_MA0143.1 JASPAR - 103352170 103352184 4.0E-06 CTATTGTAATCCACA 15 V_KLF15_Q2_M01714 TRANSFAC - 103352764 103352777 5.0E-06 GAACAGGGGTGTGG 14 V_SPI1_01_M01203 TRANSFAC - 103353578 103353594 1.0E-05 CATAGGAGGAAGTGAAG 17 V_AML_Q6_M00769 TRANSFAC - 103352508 103352522 2.0E-06 GTGCCTGTGGTTTGC 15 V_TBX15_01_M01263 TRANSFAC + 103352259 103352277 3.0E-06 ACGTGGGAAATTAGCACTC 19 V_SOX14_05_M02902 TRANSFAC - 103352341 103352355 6.0E-06 ATTGCACAATGGCGG 15 V_FOXO4_02_M00476 TRANSFAC - 103353799 103353812 8.0E-06 GGTTTGTTCACATT 14 V_CBF_02_M01080 TRANSFAC + 103352165 103352180 6.0E-06 AGAACTGTGGATTACA 16 V_SP1_Q6_01_M00931 TRANSFAC - 103353328 103353337 4.0E-06 GGGGCGGGGC 10 V_CEBP_C_M00201 TRANSFAC + 103352343 103352360 9.0E-06 GCCATTGTGCAATGCACA 18 V_AP2_Q6_01_M00915 TRANSFAC + 103353047 103353059 6.0E-06 GGGTCCCCAGGCC 13 V_IRF3_05_M02767 TRANSFAC - 103352246 103352259 7.0E-06 TAGAATGGAAAGTT 14 V_NERF_Q2_M00531 TRANSFAC + 103353129 103353146 2.0E-06 GAGCAGGAAGCGGCGGGC 18 V_PU1_Q4_M01172 TRANSFAC + 103353575 103353593 1.0E-06 GAGCTTCACTTCCTCCTAT 19 V_GM497_04_M02864 TRANSFAC + 103352515 103352530 5.0E-06 ACAGGCACACACATCA 16 V_GC_01_M00255 TRANSFAC - 103353326 103353339 4.0E-06 TCGGGGCGGGGCTG 14 V_SPI1_03_M02078 TRANSFAC - 103354069 103354078 6.0E-06 TGAGGAAGTT 10 V_TBX18_01_M01262 TRANSFAC + 103352259 103352277 5.0E-06 ACGTGGGAAATTAGCACTC 19 V_RUNX1_01_M02257 TRANSFAC - 103352510 103352520 2.0E-06 GCCTGTGGTTT 11 V_SP4_03_M02810 TRANSFAC - 103353369 103353385 5.0E-06 GCACCCGCCCCCTCTCT 17 V_IRX4_01_M01410 TRANSFAC + 103352133 103352149 7.0E-06 AGCTTACTTGTAAGACT 17 V_SP1_Q6_M00196 TRANSFAC - 103353327 103353339 8.0E-06 TCGGGGCGGGGCT 13 V_E47_02_M00071 TRANSFAC - 103352810 103352825 1.0E-06 GTGACCAGGTGTTAAA 16 V_AP2BETA_Q3_M01858 TRANSFAC - 103353049 103353064 9.0E-06 GTTCGGGCCTGGGGAC 16 V_ELF5_01_M01197 TRANSFAC - 103354069 103354079 6.0E-06 ATGAGGAAGTT 11 V_SP1SP3_Q4_M01219 TRANSFAC - 103353371 103353381 5.0E-06 CCGCCCCCTCT 11 V_TAL1BETAE47_01_M00065 TRANSFAC - 103352810 103352825 8.0E-06 GTGACCAGGTGTTAAA 16 V_NEUROD_02_M01288 TRANSFAC - 103352735 103352746 5.0E-06 CAGCTGCTGTGC 12 V_SP4_Q5_M01273 TRANSFAC + 103353328 103353338 2.0E-06 GCCCCGCCCCG 11 V_ELF1_Q6_M00746 TRANSFAC - 103353582 103353593 3.0E-06 ATAGGAGGAAGT 12 V_IRX3_02_M01485 TRANSFAC + 103352133 103352149 4.0E-06 AGCTTACTTGTAAGACT 17 V_ZSCAN4_04_M02942 TRANSFAC + 103352515 103352530 4.0E-06 ACAGGCACACACATCA 16 V_ZFP206_01_M01742 TRANSFAC - 103353357 103353367 1.0E-06 TGCGCAGGCGC 11 V_RBPJK_01_M01112 TRANSFAC + 103352258 103352268 6.0E-06 TACGTGGGAAA 11 V_SPIC_02_M02077 TRANSFAC - 103354069 103354078 3.0E-06 TGAGGAAGTT 10 V_STAT1STAT1_Q3_M01212 TRANSFAC - 103352691 103352703 1.0E-05 TTTTACCAGAACA 13 V_EGR1_06_M02744 TRANSFAC - 103353369 103353382 3.0E-06 CCCGCCCCCTCTCT 14 V_OSR1_04_M02888 TRANSFAC + 103353766 103353781 7.0E-06 ACATGCTTCTTAAGAT 16 V_TBX22_01_M01195 TRANSFAC + 103352259 103352277 4.0E-06 ACGTGGGAAATTAGCACTC 19 V_SOX2_01_M02246 TRANSFAC - 103352170 103352184 4.0E-06 CTATTGTAATCCACA 15 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 103352510 103352517 1.0E-05 TGTGGTTT 8 V_LPOLYA_B_M00318 TRANSFAC + 103352909 103352916 7.0E-06 CAATAAAG 8 V_TAACC_B_M00331 TRANSFAC + 103352498 103352520 0.0E+00 TGGTAAAAAAGCAAACCACAGGC 23 V_CEBPE_01_M01772 TRANSFAC + 103352346 103352355 4.0E-06 ATTGTGCAAT 10 V_CEBPG_Q6_01_M01869 TRANSFAC - 103352345 103352356 6.0E-06 CATTGCACAATG 12 V_PPARA_01_M00242 TRANSFAC + 103352936 103352955 7.0E-06 CTGAAGTGGGTGATAGGGCA 20 V_SPIB_03_M02076 TRANSFAC - 103354069 103354078 2.0E-06 TGAGGAAGTT 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.