Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RAE1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8480 RAE1 RNA export 1 homolog (S. pombe) chr20 + 55921144 - 55927117 55926617 Transcription Factor Binding Sites   Download all TFBS in the RAE1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 55921628 55921646 0.0E+00 TTGCCAGCAGAGGGCGACC 19 SP8_C2H2_DBD_monomeric_12_1 SELEX - 55925327 55925338 3.0E-06 CACACGCCCACT 12 E2F3_E2F_DBD_dimeric_18_2 SELEX + 55926242 55926259 9.0E-06 GGAAAAGGAGCCTTTTTC 18 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX + 55925410 55925429 9.0E-06 TTGACCCTAATTAGGAACAG 20 RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 55926047 55926062 8.0E-06 TGGGGTCAGGAGTTCA 16 Pax6_MA0069.1 JASPAR + 55925393 55925406 1.0E-06 TTCACGTATGATTT 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 55926009 55926019 1.0E-05 GCCCCGCCCCC 11 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 55926238 55926249 5.0E-06 CCTTTTCCCGCA 12 ZNF232_C2H2_full_monomeric_19_1 SELEX - 55926171 55926189 4.0E-06 TGGTCCAAAGTTGATGTAG 19 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX - 55926044 55926061 7.0E-06 GGGGTCAGGAGTTCAAGA 18 E2F2_E2F_DBD_dimeric_16_1 SELEX - 55926243 55926258 3.0E-06 AAAAAGGCTCCTTTTC 16 RARG_nuclearreceptor_full_dimeric_18_1 SELEX + 55923201 55923218 6.0E-06 AGGGTCAGGCACAGGACA 18 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 55925322 55925337 2.0E-06 ACACGCCCACTCCAAA 16 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 55925406 55925423 1.0E-05 TCACTTGACCCTAATTAG 18 SP1_MA0079.2 JASPAR - 55925993 55926002 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 55926002 55926011 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 55926009 55926018 7.0E-06 CCCCGCCCCC 10 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX - 55926174 55926189 9.0E-06 TGGTCCAAAGTTGATG 16 RARA_nuclearreceptor_full_dimeric_17_1 SELEX + 55923202 55923218 8.0E-06 GGGTCAGGCACAGGACA 17 RFX3_RFX_DBD_dimeric_15_1 SELEX - 55926148 55926162 4.0E-06 AGTTACTAAGCGACT 15 CTCF_C2H2_full_monomeric_17_1 SELEX + 55921629 55921645 9.0E-06 GTCGCCCTCTGCTGGCA 17 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX - 55926175 55926189 5.0E-06 TGGTCCAAAGTTGAT 15 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX - 55926046 55926061 1.0E-06 GGGGTCAGGAGTTCAA 16 INSM1_MA0155.1 JASPAR - 55926747 55926758 6.0E-06 TGTAAGGGGGAG 12 ZNF282_C2H2_DBD_monomeric_17_1 SELEX - 55921753 55921769 4.0E-06 TTTTCCCCAAACTCTTT 17 E2F1_E2F_DBD_monomeric_14_2 SELEX - 55926244 55926257 5.0E-06 AAAAGGCTCCTTTT 14 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 55921758 55921768 5.0E-06 TTTCCCCAAAC 11 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX - 55926047 55926061 1.0E-06 GGGGTCAGGAGTTCA 15 PLAG1_MA0163.1 JASPAR - 55926830 55926843 6.0E-06 GAGGCTAAAAGGGG 14 NRF1_NRF_full_dimeric_12_1 SELEX + 55926219 55926230 5.0E-06 TGCGCATGTGCT 12 RARG_nuclearreceptor_full_dimeric_16_1 SELEX - 55926046 55926061 7.0E-06 GGGGTCAGGAGTTCAA 16 RARA_nuclearreceptor_full_dimeric_15_1 SELEX - 55926047 55926061 6.0E-06 GGGGTCAGGAGTTCA 15 Zfx_MA0146.1 JASPAR + 55926072 55926085 5.0E-06 CCCGCCTCGGCCTC 14 V_NFAT_Q4_01_M00935 TRANSFAC + 55921684 55921693 3.0E-06 GTGGAAATTT 10 RXR_RAR_DR5_MA0159.1 JASPAR + 55923202 55923218 1.0E-06 GGGTCAGGCACAGGACA 17 V_STAT5A_Q6_M01890 TRANSFAC + 55921688 55921700 5.0E-06 AAATTTCTTTGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 55921692 55921704 4.0E-06 ACATTTCAAAGAA 13 V_TCF3_01_M01594 TRANSFAC + 55921693 55921705 2.0E-06 TCTTTGAAATGTT 13 V_APOLYA_B_M00310 TRANSFAC - 55921644 55921658 7.0E-06 AATAATGAGCGTTTG 15 V_ATF5_01_M01295 TRANSFAC - 55924557 55924567 7.0E-06 TTTCTTCCTTC 11 V_SOX14_05_M02902 TRANSFAC - 55921709 55921723 3.0E-06 TTTAGACAATGACTT 15 V_SMAD3_Q6_01_M01888 TRANSFAC + 55923214 55923226 7.0E-06 GGACAGACATCAT 13 V_NRSF_Q4_M01028 TRANSFAC + 55926372 55926390 6.0E-06 TTTCTGTCCGCGCTCCTGG 19 V_BCL6_01_M01183 TRANSFAC + 55921692 55921707 3.0E-06 TTCTTTGAAATGTTTT 16 V_IK_Q5_M01169 TRANSFAC - 55926081 55926090 3.0E-06 TTTGGGAGGC 10 V_FOXJ1_04_M02854 TRANSFAC + 55921742 55921756 8.0E-06 GAGTCACAACAAAAG 15 V_SP1_Q6_01_M00931 TRANSFAC + 55926010 55926019 4.0E-06 GGGGCGGGGC 10 V_ZTA_Q2_M00711 TRANSFAC + 55921574 55921586 0.0E+00 TCACTGTTACACA 13 V_ISL2_01_M01328 TRANSFAC + 55925347 55925362 5.0E-06 AAGAATCCCTTAACAT 16 V_RP58_01_M00532 TRANSFAC - 55924470 55924481 9.0E-06 GACGCATCTGGA 12 V_CEBP_01_M00159 TRANSFAC + 55921550 55921562 9.0E-06 TGTTTGCTAAATG 13 V_P53_DECAMER_Q2_M00761 TRANSFAC - 55926037 55926046 1.0E-06 AGACAAGTCT 10 V_SP1_03_M02281 TRANSFAC - 55925993 55926002 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 55926002 55926011 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 55926009 55926018 7.0E-06 CCCCGCCCCC 10 V_PITX2_Q6_M02114 TRANSFAC - 55926095 55926104 1.0E-06 TGTAATCCCA 10 V_SP1_02_M01303 TRANSFAC + 55925994 55926004 3.0E-06 GGGGCGGGGGG 11 V_SP1_02_M01303 TRANSFAC + 55926003 55926013 3.0E-06 GGGGCGGGGGG 11 V_LYF1_01_M00141 TRANSFAC - 55926082 55926090 9.0E-06 TTTGGGAGG 9 V_HOXC13_01_M01317 TRANSFAC - 55924378 55924393 9.0E-06 ACAGCTCATAAAGACG 16 V_P53_02_M00272 TRANSFAC + 55926037 55926046 4.0E-06 AGACTTGTCT 10 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 55926048 55926062 7.0E-06 TGGGGTCAGGAGTTC 15 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 55926623 55926637 8.0E-06 CGAGGTCAGAGCTGG 15 V_BARBIE_01_M00238 TRANSFAC - 55921815 55921829 5.0E-06 ATCCAAAGCTGATTA 15 V_RPC155_01_M01798 TRANSFAC - 55926042 55926057 0.0E+00 TCAGGAGTTCAAGACA 16 V_ETS_Q4_M00771 TRANSFAC - 55926281 55926292 0.0E+00 AGCCACTTCCTG 12 V_ZNF219_01_M01122 TRANSFAC - 55926004 55926015 5.0E-06 CGCCCCCCGCCC 12 V_TCF3_04_M02816 TRANSFAC - 55921689 55921705 4.0E-06 AACATTTCAAAGAAATT 17 V_BEL1_B_M00312 TRANSFAC + 55926196 55926223 4.0E-06 AAACTGCTGGTGTAAAGCGTTTTTGCGC 28 V_RFX1_01_M00280 TRANSFAC + 55926147 55926163 1.0E-06 CAGTCGCTTAGTAACTT 17 V_STAT1_01_M00224 TRANSFAC + 55926231 55926251 5.0E-06 GTCGCCTTGCGGGAAAAGGAG 21 V_KROX_Q6_M00982 TRANSFAC - 55925997 55926010 7.0E-06 CCCGCCCCCCCCGC 14 V_SIX3_01_M01358 TRANSFAC - 55921782 55921798 8.0E-06 TTGAGTGTATCACATAG 17 V_SP1_Q6_M00196 TRANSFAC + 55926008 55926020 1.0E-06 GGGGGGCGGGGCG 13 V_MAZ_Q6_01_M02023 TRANSFAC + 55925993 55926006 7.0E-06 GGGGGCGGGGGGGG 14 V_ZF5_B_M00333 TRANSFAC + 55926549 55926561 1.0E-06 CGGGAGCGCGCTT 13 V_NKX25_Q5_M01043 TRANSFAC + 55925404 55925413 7.0E-06 TTTCACTTGA 10 V_SP1SP3_Q4_M01219 TRANSFAC - 55925999 55926009 4.0E-06 CCGCCCCCCCC 11 V_PEBP_Q6_M00984 TRANSFAC + 55924397 55924411 7.0E-06 ACTCACCGCAAAGGT 15 V_TEL2_Q6_M00678 TRANSFAC - 55926281 55926290 6.0E-06 CCACTTCCTG 10 V_STAT4_Q5_M02117 TRANSFAC - 55921691 55921700 3.0E-06 TTCAAAGAAA 10 V_CTCF_02_M01259 TRANSFAC - 55921630 55921649 0.0E+00 CGTTTGCCAGCAGAGGGCGA 20 V_CTCF_01_M01200 TRANSFAC - 55921628 55921647 1.0E-06 TTTGCCAGCAGAGGGCGACC 20 V_INSM1_01_M02268 TRANSFAC - 55926747 55926758 6.0E-06 TGTAAGGGGGAG 12 V_ISGF4G_04_M02875 TRANSFAC - 55921696 55921709 3.0E-06 TGAAAACATTTCAA 14 V_SP4_Q5_M01273 TRANSFAC - 55925993 55926003 5.0E-06 CCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 55926002 55926012 5.0E-06 CCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 55926009 55926019 1.0E-06 GCCCCGCCCCC 11 V_POU6F1_02_M01462 TRANSFAC - 55921645 55921661 7.0E-06 GAGAATAATGAGCGTTT 17 V_ZSCAN4_04_M02942 TRANSFAC - 55921854 55921869 3.0E-06 AGAAGCACACATTAAG 16 V_ZFP206_01_M01742 TRANSFAC + 55926219 55926229 7.0E-06 TGCGCATGTGC 11 V_STAT1STAT1_Q3_M01212 TRANSFAC - 55921690 55921702 1.0E-06 ATTTCAAAGAAAT 13 V_NRF1_Q6_M00652 TRANSFAC - 55926219 55926228 9.0E-06 CACATGCGCA 10 V_PITX2_Q2_M00482 TRANSFAC - 55926094 55926104 1.0E-06 TGTAATCCCAG 11 V_ETS1_B_M00339 TRANSFAC + 55926280 55926294 1.0E-06 GCAGGAAGTGGCTCC 15 V_RXR_RAR_01_M02272 TRANSFAC + 55923202 55923218 1.0E-06 GGGTCAGGCACAGGACA 17 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 55926050 55926064 5.0E-06 CCTGGGGTCAGGAGT 15 V_SOX14_04_M02901 TRANSFAC + 55921677 55921693 0.0E+00 ATTTTGGGTGGAAATTT 17 V_POU6F1_03_M01479 TRANSFAC - 55921645 55921661 9.0E-06 GAGAATAATGAGCGTTT 17 V_IPF1_Q4_01_M01013 TRANSFAC + 55921647 55921661 4.0E-06 ACGCTCATTATTCTC 15 V_MEF2_01_M00006 TRANSFAC + 55926887 55926902 5.0E-06 CTCTGAAACTAAGTCT 16 V_S8_02_M01376 TRANSFAC - 55921809 55921825 8.0E-06 AAAGCTGATTAACAAAG 17 V_SP1_Q2_01_M00933 TRANSFAC - 55925993 55926002 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 55926002 55926011 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 55926009 55926018 4.0E-06 CCCCGCCCCC 10 V_ARP1_01_M00155 TRANSFAC + 55926047 55926062 0.0E+00 TGAACTCCTGACCCCA 16 V_ARP1_01_M00155 TRANSFAC + 55926882 55926897 1.0E-05 CCAGTCTCTGAAACTA 16 V_LHX4_01_M01421 TRANSFAC + 55921810 55921826 7.0E-06 TTTGTTAATCAGCTTTG 17 V_HNF4_01_M00134 TRANSFAC - 55926173 55926191 1.0E-05 ATTGGTCCAAAGTTGATGT 19 V_SP1_Q4_01_M00932 TRANSFAC + 55926008 55926020 2.0E-06 GGGGGGCGGGGCG 13 V_STAT1_05_M01260 TRANSFAC + 55921689 55921710 5.0E-06 AATTTCTTTGAAATGTTTTCAA 22 V_MIF1_01_M00279 TRANSFAC + 55926147 55926164 3.0E-06 CAGTCGCTTAGTAACTTG 18 V_PAX6_01_M00097 TRANSFAC + 55925389 55925409 0.0E+00 GTAGTTCACGTATGATTTCAC 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.