Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GPT2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84706 glutamic pyruvate transaminase (alanine aminotransferase) 2 chr16 + 46913307 - 46919601 46919101 Transcription Factor Binding Sites   Download all TFBS in the GPT2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 46917463 46917480 1.0E-06 TCAACAAATATTTACTGA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 46917463 46917480 1.0E-06 TCAGTAAATATTTGTTGA 18 HSF2_HSF_DBD_trimeric_13_1 SELEX - 46917322 46917334 7.0E-06 TTCTGGAAGACTC 13 PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 46920208 46920216 8.0E-06 GTTAATCCC 9 Foxa2_MA0047.2 JASPAR + 46917471 46917482 9.0E-06 TATTTACTGAGT 12 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 46917656 46917669 9.0E-06 GAGGTCTGAGGTCA 14 SOX21_HMG_DBD_dimeric_13_2 SELEX + 46919087 46919099 5.0E-06 TGAATTGAATTCG 13 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 46917656 46917669 4.0E-06 GAGGTCTGAGGTCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 46917656 46917669 4.0E-06 GAGGTCTGAGGTCA 14 STAT1_MA0137.2 JASPAR - 46919228 46919242 4.0E-06 TTTTTCCAAGAACTT 15 STAT1_MA0137.2 JASPAR - 46920270 46920284 6.0E-06 TAATTCCTGGAACCC 15 SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 46919079 46919091 3.0E-06 ATTCAACAAGTGA 13 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 46917465 46917478 0.0E+00 AACAAATATTTACT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 46917465 46917478 0.0E+00 AGTAAATATTTGTT 14 SPIB_ETS_DBD_monomeric_14_1 SELEX + 46917639 46917652 2.0E-06 ATAAAACGGAAGTG 14 PITX1_homeodomain_full_monomeric_8_1 SELEX - 46920208 46920215 1.0E-05 TTAATCCC 8 Tcfcp2l1_MA0145.1 JASPAR - 46920155 46920168 6.0E-06 CCAGCTCCAGCCTG 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 46917465 46917478 0.0E+00 AACAAATATTTACT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 46917465 46917478 1.0E-06 AGTAAATATTTGTT 14 Sox17_HMG_DBD_dimeric_15_2 SELEX - 46919086 46919100 3.0E-06 ACGAATTCAATTCAA 15 ELF3_ETS_full_monomeric_13_1 SELEX + 46917641 46917653 5.0E-06 AAAACGGAAGTGA 13 SOX2_HMG_full_dimeric_15_1 SELEX + 46919086 46919100 8.0E-06 TTGAATTGAATTCGT 15 SP1_MA0079.2 JASPAR + 46916531 46916540 9.0E-06 CCCCTCCTCC 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX + 46917656 46917670 6.0E-06 GAGGTCTGAGGTCAG 15 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX - 46916449 46916461 2.0E-06 TCCCACGTCATCA 13 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 46917465 46917478 0.0E+00 AACAAATATTTACT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 46917465 46917478 1.0E-06 AGTAAATATTTGTT 14 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 46919077 46919091 5.0E-06 ATTCAACAAGTGAAC 15 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 46920208 46920215 1.0E-05 TTAATCCC 8 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 46917465 46917478 1.0E-06 AACAAATATTTACT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 46917465 46917478 1.0E-06 AGTAAATATTTGTT 14 POU6F2_POU_full_monomeric_10_1 SELEX - 46919947 46919956 8.0E-06 GCTCATTAAA 10 HOXB13_homeodomain_DBD_monomeric_11_1 SELEX - 46919946 46919956 1.0E-05 GCTCATTAAAA 11 CREB3L1_bZIP_full_dimeric_14_1 SELEX - 46916449 46916462 9.0E-06 CTCCCACGTCATCA 14 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 46917595 46917610 0.0E+00 CCAGTAAAAAGTAACC 16 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 46919234 46919249 9.0E-06 TTGGAAAAAAGTAAAA 16 ELF1_ETS_full_monomeric_12_1 SELEX + 46917641 46917652 4.0E-06 AAAACGGAAGTG 12 SOX18_HMG_full_dimeric_15_3 SELEX + 46919086 46919100 4.0E-06 TTGAATTGAATTCGT 15 SOX18_HMG_full_dimeric_15_3 SELEX - 46919086 46919100 8.0E-06 ACGAATTCAATTCAA 15 SPI1_ETS_full_monomeric_14_1 SELEX + 46917639 46917652 3.0E-06 ATAAAACGGAAGTG 14 Hic1_C2H2_DBD_dimeric_18_1 SELEX - 46917841 46917858 1.0E-05 GTGCCTGCGGCTGCCCAC 18 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 46920343 46920358 3.0E-06 GAGGACAGAAGGGCAC 16 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 46917470 46917480 9.0E-06 TCAGTAAATAT 11 Sox1_HMG_DBD_dimeric_15_2 SELEX + 46919086 46919100 6.0E-06 TTGAATTGAATTCGT 15 Sox1_HMG_DBD_dimeric_15_2 SELEX - 46919086 46919100 6.0E-06 ACGAATTCAATTCAA 15 HNF1A_MA0046.1 JASPAR - 46917597 46917610 2.0E-06 GGTTACTTTTTACT 14 V_MINI20_B_M00324 TRANSFAC + 46917891 46917911 7.0E-06 TGACTGCACCATCCAGCAGCC 21 V_SPI1_01_M01203 TRANSFAC + 46917639 46917655 1.0E-06 ATAAAACGGAAGTGATG 17 V_STAT5A_Q6_M01890 TRANSFAC - 46919231 46919243 4.0E-06 TTTTTTCCAAGAA 13 V_FLI1_Q6_M01208 TRANSFAC + 46917644 46917654 7.0E-06 ACGGAAGTGAT 11 V_GATA2_02_M00348 TRANSFAC + 46916563 46916572 2.0E-06 AGAGATAACA 10 V_BCL6B_03_M02740 TRANSFAC - 46919227 46919242 6.0E-06 TTTTTCCAAGAACTTA 16 V_RHOX11_01_M01347 TRANSFAC - 46920231 46920247 7.0E-06 AATCAGCTGTAACGTGA 17 V_MAFB_05_M02775 TRANSFAC + 46919990 46920006 3.0E-06 AGTTCTGCTGACTCAAA 17 V_HOXA13_02_M01297 TRANSFAC + 46917637 46917645 1.0E-06 AAATAAAAC 9 V_HOXA13_02_M01297 TRANSFAC + 46919242 46919250 8.0E-06 AAGTAAAAC 9 V_AR_Q6_01_M01996 TRANSFAC + 46916481 46916495 2.0E-06 GTGCTTGTTGTTCTC 15 V_FOXJ1_04_M02854 TRANSFAC + 46917717 46917731 4.0E-06 GTCTCACAACAACCC 15 V_SP1_Q6_01_M00931 TRANSFAC - 46918021 46918030 4.0E-06 GGGGCGGGGC 10 V_IRF_Q6_01_M00972 TRANSFAC - 46918587 46918597 3.0E-06 AAAAGAGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC - 46918584 46918599 8.0E-06 CAAAAAGAGAAAAAGA 16 V_IRF2_Q6_M01882 TRANSFAC + 46919238 46919253 9.0E-06 AAAAAAGTAAAACGGA 16 V_GTF2IRD1_01_M01229 TRANSFAC + 46920620 46920628 7.0E-06 GGGATTAGG 9 V_CEBP_01_M00159 TRANSFAC - 46917419 46917431 9.0E-06 TGTTTGGTAACGG 13 V_EAR2_Q2_M01728 TRANSFAC + 46920282 46920295 3.0E-06 TTACCTCTGCCTTT 14 V_STAT5B_01_M00459 TRANSFAC + 46919228 46919242 4.0E-06 AAGTTCTTGGAAAAA 15 V_STAT5B_01_M00459 TRANSFAC - 46919228 46919242 3.0E-06 TTTTTCCAAGAACTT 15 V_STAT5B_01_M00459 TRANSFAC + 46920270 46920284 7.0E-06 GGGTTCCAGGAATTA 15 V_STAT5B_01_M00459 TRANSFAC - 46920270 46920284 2.0E-06 TAATTCCTGGAACCC 15 V_SP1_03_M02281 TRANSFAC + 46916531 46916540 9.0E-06 CCCCTCCTCC 10 V_STAT6_01_M00494 TRANSFAC - 46916501 46916508 7.0E-06 TATTTCCA 8 V_BRN2_01_M00145 TRANSFAC - 46920421 46920436 1.0E-05 CACATTCTTAAAGAAT 16 V_LDSPOLYA_B_M00317 TRANSFAC + 46918573 46918588 7.0E-06 GACGTGTTTGTTCTTT 16 V_LDSPOLYA_B_M00317 TRANSFAC - 46920127 46920142 2.0E-06 AGCCTGTGTTCTCTGC 16 V_AR_03_M00956 TRANSFAC + 46916474 46916500 3.0E-06 AGGCTGTGTGCTTGTTGTTCTCAGTTG 27 V_HELIOSA_02_M01004 TRANSFAC + 46919232 46919242 7.0E-06 TCTTGGAAAAA 11 V_FOXA2_02_M02853 TRANSFAC - 46918576 46918590 2.0E-06 AAAAAGAACAAACAC 15 V_FREAC3_01_M00291 TRANSFAC - 46917467 46917482 1.0E-05 ACTCAGTAAATATTTG 16 V_PR_01_M00954 TRANSFAC + 46916474 46916500 6.0E-06 AGGCTGTGTGCTTGTTGTTCTCAGTTG 27 V_HOXB13_01_M01467 TRANSFAC + 46917592 46917607 8.0E-06 AAGCCAGTAAAAAGTA 16 V_HNF3G_Q4_M02015 TRANSFAC + 46918577 46918584 7.0E-06 TGTTTGTT 8 V_NFAT_Q6_M00302 TRANSFAC + 46913709 46913720 1.0E-06 TACAGGAAAATT 12 V_POLY_C_M00212 TRANSFAC - 46919936 46919953 8.0E-06 CATTAAAACCCCCAAGTC 18 V_PAX9_B_M00329 TRANSFAC - 46917336 46917359 3.0E-06 GTGGCGTAGGGTGGCGCAAAGGGA 24 V_XFD3_01_M00269 TRANSFAC - 46917467 46917480 4.0E-06 TCAGTAAATATTTG 14 V_IRF3_Q3_M01279 TRANSFAC - 46919241 46919253 3.0E-06 TCCGTTTTACTTT 13 V_EVI1_01_M00078 TRANSFAC + 46916565 46916580 1.0E-05 AGATAACAGAAGAGCA 16 V_HNF3_Q6_M00791 TRANSFAC + 46917462 46917474 8.0E-06 TTCAACAAATATT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 46918577 46918587 2.0E-06 TGTTTGTTCTT 11 V_IRF_Q6_M00772 TRANSFAC + 46918583 46918597 1.0E-06 TTCTTTTTCTCTTTT 15 V_HNF1_Q6_01_M01011 TRANSFAC + 46917593 46917613 7.0E-06 AGCCAGTAAAAAGTAACCGAA 21 V_SFPI1_04_M02896 TRANSFAC + 46913705 46913718 6.0E-06 TAATTACAGGAAAA 14 V_GR_01_M00955 TRANSFAC + 46916474 46916500 5.0E-06 AGGCTGTGTGCTTGTTGTTCTCAGTTG 27 V_MUSCLE_INI_B_M00321 TRANSFAC + 46917891 46917911 4.0E-06 TGACTGCACCATCCAGCAGCC 21 V_ELK1_02_M00025 TRANSFAC + 46917640 46917653 7.0E-06 TAAAACGGAAGTGA 14 V_MAFK_Q3_M02022 TRANSFAC - 46919994 46920004 6.0E-06 TGAGTCAGCAG 11 V_STAT4_Q5_M02117 TRANSFAC + 46913708 46913717 4.0E-06 TTACAGGAAA 10 V_GATA5_04_M02860 TRANSFAC + 46916560 46916576 7.0E-06 GACAGAGATAACAGAAG 17 V_AP1_01_M00517 TRANSFAC - 46919995 46920007 7.0E-06 TTTTGAGTCAGCA 13 V_FOXO1_Q5_M01216 TRANSFAC - 46916435 46916443 8.0E-06 AAAAACAAG 9 V_ZFP691_04_M02937 TRANSFAC + 46917806 46917822 9.0E-06 TCCCAGACTCCTCACCC 17 V_SP4_Q5_M01273 TRANSFAC + 46918021 46918031 8.0E-06 GCCCCGCCCCT 11 V_ELF1_Q6_M00746 TRANSFAC + 46913707 46913718 3.0E-06 ATTACAGGAAAA 12 V_MINI19_B_M00323 TRANSFAC + 46917891 46917911 6.0E-06 TGACTGCACCATCCAGCAGCC 21 V_AP4_01_M00005 TRANSFAC - 46920155 46920172 3.0E-06 AGGGCCAGCTCCAGCCTG 18 V_EHF_06_M02745 TRANSFAC + 46917639 46917653 4.0E-06 ATAAAACGGAAGTGA 15 V_TAL1_01_M01591 TRANSFAC - 46917760 46917772 2.0E-06 CTTCCTTCTCAGC 13 V_IPF1_05_M01255 TRANSFAC - 46919945 46919956 2.0E-06 GCTCATTAAAAC 12 V_HNF1_01_M00132 TRANSFAC - 46917596 46917610 3.0E-06 GGTTACTTTTTACTG 15 V_CAAT_C_M00200 TRANSFAC - 46919240 46919264 6.0E-06 CCCAACCCTCTTCCGTTTTACTTTT 25 V_ZSCAN4_04_M02942 TRANSFAC - 46920607 46920622 3.0E-06 CCCAGCACACAAGACT 16 V_GATA3_02_M00350 TRANSFAC + 46916563 46916572 2.0E-06 AGAGATAACA 10 V_ZBTB4_04_M02929 TRANSFAC - 46916439 46916454 5.0E-06 TCATCACTGTGAAAAA 16 V_FPM315_01_M01587 TRANSFAC - 46916532 46916543 4.0E-06 AGGGGAGGAGGG 12 V_FOXA2_03_M02260 TRANSFAC + 46917471 46917482 9.0E-06 TATTTACTGAGT 12 V_T3RBETA_Q6_01_M02119 TRANSFAC + 46920334 46920350 6.0E-06 GAGGATGATGAGGACAG 17 V_MEF3_B_M00319 TRANSFAC - 46917684 46917696 1.0E-06 TGGTCAGGTTTTC 13 V_SOX21_04_M02907 TRANSFAC + 46919098 46919114 6.0E-06 CGTCAATTGTTGAGCGG 17 V_IRF1_Q6_01_M01881 TRANSFAC + 46918585 46918598 2.0E-06 CTTTTTCTCTTTTT 14 V_STAT5A_01_M00457 TRANSFAC + 46919228 46919242 7.0E-06 AAGTTCTTGGAAAAA 15 V_STAT5A_01_M00457 TRANSFAC - 46919228 46919242 6.0E-06 TTTTTCCAAGAACTT 15 V_STAT5A_01_M00457 TRANSFAC + 46920270 46920284 5.0E-06 GGGTTCCAGGAATTA 15 V_STAT5A_01_M00457 TRANSFAC - 46920270 46920284 1.0E-06 TAATTCCTGGAACCC 15 V_GATA2_03_M00349 TRANSFAC + 46916563 46916572 2.0E-06 AGAGATAACA 10 V_FOXJ2_01_M00422 TRANSFAC + 46917460 46917477 2.0E-06 TCTTCAACAAATATTTAC 18 V_FOXJ2_01_M00422 TRANSFAC - 46917466 46917483 5.0E-06 CACTCAGTAAATATTTGT 18 V_VMAF_01_M00035 TRANSFAC - 46913742 46913760 8.0E-06 ACTTGCTGATTCTGAAATT 19 V_VMAF_01_M00035 TRANSFAC + 46919992 46920010 5.0E-06 TTCTGCTGACTCAAAACAG 19 V_NMYC_01_M00055 TRANSFAC - 46916589 46916600 3.0E-06 ACCCACGTGTCA 12 V_SOX1_03_M02802 TRANSFAC - 46919081 46919096 1.0E-06 ATTCAATTCAACAAGT 16 V_NFE2_01_M00037 TRANSFAC + 46919995 46920005 4.0E-06 TGCTGACTCAA 11 V_PR_02_M00957 TRANSFAC + 46916474 46916500 3.0E-06 AGGCTGTGTGCTTGTTGTTCTCAGTTG 27 V_PIT1_Q6_M00802 TRANSFAC + 46917453 46917470 3.0E-06 CATTCATTCTTCAACAAA 18 V_SP1_Q2_01_M00933 TRANSFAC + 46918022 46918031 7.0E-06 CCCCGCCCCT 10 V_FOXO4_01_M00472 TRANSFAC - 46916433 46916443 4.0E-06 AAAAACAAGTC 11 V_UF1H3BETA_Q6_M01068 TRANSFAC - 46918015 46918028 2.0E-06 GGCGGGGCAGGGGC 14 V_BRN3C_01_M01408 TRANSFAC + 46919943 46919958 1.0E-05 GGGTTTTAATGAGCTC 16 V_CMAF_01_M01070 TRANSFAC - 46913744 46913762 9.0E-06 AGACTTGCTGATTCTGAAA 19 V_TAACC_B_M00331 TRANSFAC + 46919235 46919257 6.0E-06 TGGAAAAAAGTAAAACGGAAGAG 23 V_TCF11MAFG_01_M00284 TRANSFAC - 46919989 46920010 1.0E-06 CTGTTTTGAGTCAGCAGAACTG 22 V_HNF1A_01_M02162 TRANSFAC - 46917597 46917610 2.0E-06 GGTTACTTTTTACT 14 V_ELK1_03_M01163 TRANSFAC + 46917642 46917652 1.0E-05 AAACGGAAGTG 11 V_RHOX11_06_M03100 TRANSFAC - 46920231 46920247 7.0E-06 AATCAGCTGTAACGTGA 17 V_TCF3_05_M02920 TRANSFAC + 46917631 46917645 9.0E-06 GGCAGAAAATAAAAC 15 V_STAT1_Q6_M01823 TRANSFAC + 46913708 46913717 4.0E-06 TTACAGGAAA 10 V_STAT1_05_M01260 TRANSFAC + 46919228 46919249 1.0E-06 AAGTTCTTGGAAAAAAGTAAAA 22 V_DMRT5_01_M01150 TRANSFAC - 46917599 46917613 1.0E-05 TTCGGTTACTTTTTA 15 V_SPI1_02_M02043 TRANSFAC + 46918191 46918200 1.0E-05 AGGGGAACTA 10 V_ETV3_02_M02068 TRANSFAC + 46917643 46917652 9.0E-06 AACGGAAGTG 10 V_TR4_03_M01782 TRANSFAC + 46917657 46917669 2.0E-06 AGGTCTGAGGTCA 13 V_NANOG_02_M01247 TRANSFAC - 46918581 46918600 9.0E-06 ACAAAAAGAGAAAAAGAACA 20 V_GATA1_06_M00347 TRANSFAC + 46916563 46916572 8.0E-06 AGAGATAACA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.